BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437714.2.1
(1649 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514123.1|CO514123 s13dSG75E0800055_156908 Glandular tr... 40 0.005
gb|CO515792.1|CO515792 s13dSG54A1000071_421123 Glandular tr... 38 0.019
gb|CO514807.1|CO514807 s13dSG59D1000090_328274 Glandular tr... 36 0.076
gb|CO516073.1|CO516073 s13dSG64H0100012_445474 Glandular tr... 36 0.076
gb|CO512744.1|CO512744 s13dSG88B0600045_121414 Glandular tr... 34 0.30
gb|CO512958.1|CO512958 s13dSG86H0200016_121842 Glandular tr... 34 0.30
gb|CO514405.1|CO514405 s13dSG36B1000079_327470 Glandular tr... 34 0.30
gb|CO515005.1|CO515005 s13dSG26B1000089_397515 Glandular tr... 34 0.30
gb|CO515831.1|CO515831 s13dSG54E1100085_421201 Glandular tr... 34 0.30
gb|DQ122790.1| Medicago sativa clone B17 unknown mRNA 34 0.30
>gb|CO514123.1|CO514123 s13dSG75E0800055_156908 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 244
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 889 tattcaggggcagcataacc 908
||||||||||||||||||||
Sbjct: 201 tattcaggggcagcataacc 182
>gb|CO515792.1|CO515792 s13dSG54A1000071_421123 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 544
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 21 agcaaagcaaagcaaagca 39
|||||||||||||||||||
Sbjct: 40 agcaaagcaaagcaaagca 58
>gb|CO514807.1|CO514807 s13dSG59D1000090_328274 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 36.2 bits (18), Expect = 0.076
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaa 36
||||||||||||||||||
Sbjct: 43 aaagcaaagcaaagcaaa 60
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23 caaagcaaagcaaagca 39
|||||||||||||||||
Sbjct: 42 caaagcaaagcaaagca 58
>gb|CO516073.1|CO516073 s13dSG64H0100012_445474 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 437
Score = 36.2 bits (18), Expect = 0.076
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19 aaagcaaagcaaagcaaa 36
||||||||||||||||||
Sbjct: 10 aaagcaaagcaaagcaaa 27
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23 caaagcaaagcaaagca 39
|||||||||||||||||
Sbjct: 9 caaagcaaagcaaagca 25
>gb|CO512744.1|CO512744 s13dSG88B0600045_121414 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 334 agcagcagcagcagcat 350
|||||||||||||||||
Sbjct: 67 agcagcagcagcagcat 83
>gb|CO512958.1|CO512958 s13dSG86H0200016_121842 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 530
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 333 tagcagcagcagcagca 349
|||||||||||||||||
Sbjct: 49 tagcagcagcagcagca 33
>gb|CO514405.1|CO514405 s13dSG36B1000079_327470 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1229 tcaccaaatttggatgc 1245
|||||||||||||||||
Sbjct: 420 tcaccaaatttggatgc 404
>gb|CO515005.1|CO515005 s13dSG26B1000089_397515 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 455
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1229 tcaccaaatttggatgc 1245
|||||||||||||||||
Sbjct: 420 tcaccaaatttggatgc 404
>gb|CO515831.1|CO515831 s13dSG54E1100085_421201 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 446
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 333 tagcagcagcagcagca 349
|||||||||||||||||
Sbjct: 39 tagcagcagcagcagca 23
>gb|DQ122790.1| Medicago sativa clone B17 unknown mRNA
Length = 842
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 333 tagcagcagcagcagca 349
|||||||||||||||||
Sbjct: 466 tagcagcagcagcagca 450
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4006
Number of Sequences: 7669
Number of extensions: 4006
Number of successful extensions: 1730
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1694
Number of HSP's gapped (non-prelim): 24
length of query: 1649
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1633
effective length of database: 3,623,002
effective search space: 5916362266
effective search space used: 5916362266
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)