BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430946.2.2
(3838 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular tr... 52 3e-006
gb|DQ122795.1| Medicago sativa clone M22 putative cellulose... 46 2e-004
gb|CO514402.1|CO514402 s13dSG36B0700059_327464 Glandular tr... 36 0.18
>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 52.0 bits (26), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 886 ccaataacccaaaactgctcatttctccaccaatcttcaatgccaacacc 935
||||| ||||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 329 ccaatcacccaaaactgttcattcctccaccaatcatctattccaacacc 280
>gb|DQ122795.1| Medicago sativa clone M22 putative cellulose synthase catalytic
subunit mRNA, partial cds
Length = 512
Score = 46.1 bits (23), Expect = 2e-004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 894 ccaaaactgctcatttctccaccaatc 920
||||||||| |||||||||||||||||
Sbjct: 178 ccaaaactgttcatttctccaccaatc 152
>gb|CO514402.1|CO514402 s13dSG36B0700059_327464 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 605
Score = 36.2 bits (18), Expect = 0.18
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 495 cttcacccacagcaagga 512
||||||||||||||||||
Sbjct: 487 cttcacccacagcaagga 504
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,085
Number of Sequences: 7669
Number of extensions: 10085
Number of successful extensions: 2490
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2485
Number of HSP's gapped (non-prelim): 5
length of query: 3838
length of database: 3,745,706
effective HSP length: 17
effective length of query: 3821
effective length of database: 3,615,333
effective search space: 13814187393
effective search space used: 13814187393
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)