BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.3
(1600 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513028.1|CO513028 s13dSG09G0700052_121982 Glandular tr... 38 0.019
gb|AJ888500.1|AJ888500 AJ888500 Medicago sativa subsp. x va... 38 0.019
gb|AY912107.1| Medicago satvia SSR marker Agat004 sequence 38 0.019
gb|DQ073089.1| Medicago sativa clone Agat009 SSR marker seq... 36 0.074
gb|CO512159.1|CO512159 s13dSG34F0400031_108638 Glandular tr... 34 0.29
>gb|CO513028.1|CO513028 s13dSG09G0700052_121982 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 578
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 201 atgaagatgatgatgatga 219
|||||||||||||||||||
Sbjct: 150 atgaagatgatgatgatga 132
>gb|AJ888500.1|AJ888500 AJ888500 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 695
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 202 tgaagatgatgatgatgat 220
|||||||||||||||||||
Sbjct: 116 tgaagatgatgatgatgat 134
>gb|AY912107.1| Medicago satvia SSR marker Agat004 sequence
Length = 594
Score = 38.2 bits (19), Expect = 0.019
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 201 atgaagatgatgatgatgataaa 223
|||| ||||||||||||||||||
Sbjct: 354 atgatgatgatgatgatgataaa 332
>gb|DQ073089.1| Medicago sativa clone Agat009 SSR marker sequence
Length = 669
Score = 36.2 bits (18), Expect = 0.074
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 201 atgaagatgatgatgatgataa 222
|||| |||||||||||||||||
Sbjct: 574 atgatgatgatgatgatgataa 553
>gb|CO512159.1|CO512159 s13dSG34F0400031_108638 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 557
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 206 gatgatgatgatgataa 222
|||||||||||||||||
Sbjct: 65 gatgatgatgatgataa 81
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2496
Number of Sequences: 7669
Number of extensions: 2496
Number of successful extensions: 867
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 12
length of query: 1600
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1584
effective length of database: 3,623,002
effective search space: 5738835168
effective search space used: 5738835168
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)