BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.1
(1293 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515356.1|CO515356 s13dSG49B0600057_417771 Glandular tr... 38 0.015
gb|CO512537.1|CO512537 s13dSG08C0800054_121000 Glandular tr... 36 0.060
gb|CO513473.1|CO513473 s13dSG10F1000079_130110 Glandular tr... 34 0.24
gb|CO514913.1|CO514913 s13dSG56H0900080_328486 Glandular tr... 34 0.24
gb|CO516037.1|CO516037 s13dSG64C0500036_445402 Glandular tr... 34 0.24
gb|CO516852.1|CO516852 s13dSG98E0700053_447032 Glandular tr... 34 0.24
gb|L39371.1|ALFPEPC Medicago sativa phosphoenolpyruvate car... 34 0.24
gb|M83086.1|ALFPPPCA Medicago sativa phosphoenolpyruvate ca... 34 0.24
gb|L07291.1|ALFNABP Alfalfa nucleic acid binding protein (a... 34 0.24
emb|AJ002486.1|MSAJ2486 Medicago sativa mRNA for protein ph... 34 0.24
>gb|CO515356.1|CO515356 s13dSG49B0600057_417771 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 583
Score = 38.2 bits (19), Expect = 0.015
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1209 atcatcatcttcttcttct 1227
|||||||||||||||||||
Sbjct: 112 atcatcatcttcttcttct 94
Score = 34.2 bits (17), Expect = 0.24
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttc 1226
||||||||| |||||||||||
Sbjct: 112 atcatcatcttcttcttcttc 92
>gb|CO512537.1|CO512537 s13dSG08C0800054_121000 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 609
Score = 36.2 bits (18), Expect = 0.060
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1206 atcatcatcatcttcttc 1223
||||||||||||||||||
Sbjct: 289 atcatcatcatcttcttc 306
>gb|CO513473.1|CO513473 s13dSG10F1000079_130110 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 34.2 bits (17), Expect = 0.24
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1206 atcatcatcatcttcttcttc 1226
|||||||||||||| ||||||
Sbjct: 188 atcatcatcatctttttcttc 168
>gb|CO514913.1|CO514913 s13dSG56H0900080_328486 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 503
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttc 1223
|||||||||||||||||
Sbjct: 389 tcatcatcatcttcttc 373
>gb|CO516037.1|CO516037 s13dSG64C0500036_445402 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 311
Score = 34.2 bits (17), Expect = 0.24
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttcttct 1227
|||| ||||||||||||||||
Sbjct: 153 tcattatcatcttcttcttct 133
>gb|CO516852.1|CO516852 s13dSG98E0700053_447032 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 441
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1211 catcatcttcttcttct 1227
|||||||||||||||||
Sbjct: 82 catcatcttcttcttct 98
>gb|L39371.1|ALFPEPC Medicago sativa phosphoenolpyruvate carboxylase (PEPC) gene, complete
cds
Length = 7490
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1210 tcatcatcttcttcttc 1226
|||||||||||||||||
Sbjct: 1651 tcatcatcttcttcttc 1667
>gb|M83086.1|ALFPPPCA Medicago sativa phosphoenolpyruvate carboxylase mRNA, complete cds
Length = 3317
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1210 tcatcatcttcttcttc 1226
|||||||||||||||||
Sbjct: 37 tcatcatcttcttcttc 53
>gb|L07291.1|ALFNABP Alfalfa nucleic acid binding protein (alfin-1) mRNA, complete cds
Length = 904
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1207 tcatcatcatcttcttc 1223
|||||||||||||||||
Sbjct: 623 tcatcatcatcttcttc 607
>emb|AJ002486.1|MSAJ2486 Medicago sativa mRNA for protein phosphatase 1, gamma subunit
Length = 1554
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1211 catcatcttcttcttct 1227
|||||||||||||||||
Sbjct: 108 catcatcttcttcttct 124
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3339
Number of Sequences: 7669
Number of extensions: 3339
Number of successful extensions: 1199
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 29
length of query: 1293
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1277
effective length of database: 3,623,002
effective search space: 4626573554
effective search space used: 4626573554
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)