BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419390.2.1
(1603 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x va... 50 5e-006
gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted... 42 0.001
gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x va... 42 0.001
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 40 0.005
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 40 0.005
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 40 0.005
gb|AW698684.1|AW698684 R123 non-glandular-haired subtracted... 40 0.005
gb|AW698714.1|AW698714 R91 non-glandular-haired subtracted ... 40 0.005
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 40 0.005
gb|AW698339.1|AW698339 g122 glandular-haired subtracted cDN... 38 0.019
gb|AW698342.1|AW698342 G2 glandular-haired subtracted cDNA ... 38 0.019
gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted... 38 0.019
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 38 0.019
gb|AW698701.1|AW698701 R154 non-glandular-haired subtracted... 38 0.019
gb|AW698712.1|AW698712 R8 non-glandular-haired subtracted c... 38 0.019
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 38 0.019
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 38 0.019
gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted... 38 0.019
gb|AW698899.1|AW698899 r7 non-glandular-haired subtracted c... 38 0.019
gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA... 36 0.074
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 36 0.074
gb|AW698693.1|AW698693 R140 non-glandular-haired subtracted... 36 0.074
gb|AW698709.1|AW698709 R84 non-glandular-haired subtracted ... 36 0.074
gb|AW698893.1|AW698893 r166 non-glandular-haired subtracted... 36 0.074
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 34 0.29
gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted ... 34 0.29
gb|CO511892.1|CO511892 s13dSG05C0100006_103684 Glandular tr... 34 0.29
gb|CO515087.1|CO515087 s13dSG40A0200017_399039 Glandular tr... 34 0.29
gb|U18239.1|MSU18239 Medicago sativa 6-phosphogluconate deh... 34 0.29
gb|AY466444.1| Medicago sativa ADP-ribosylation factor (ARF... 34 0.29
>gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 795
Score = 50.1 bits (25), Expect = 5e-006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1576 cccgcgtacctcggccgngaccacgcta 1603
||||||||||||||||| ||||||||||
Sbjct: 73 cccgcgtacctcggccgcgaccacgcta 46
>gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 477
Score = 42.1 bits (21), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1579 gcgtacctcggccgngaccacgct 1602
|||||||||||||| |||||||||
Sbjct: 24 gcgtacctcggccgcgaccacgct 1
>gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 470
Score = 42.1 bits (21), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1579 gcgtacctcggccgngaccacgct 1602
|||||||||||||| |||||||||
Sbjct: 447 gcgtacctcggccgcgaccacgct 470
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 453 gtacctcggccgcgaccacgcta 475
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 40.1 bits (20), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 23 gtacctcggccgcgaccacgcta 1
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 40.1 bits (20), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 343 gtacctcggccgcgaccacgcta 365
>gb|AW698684.1|AW698684 R123 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 156
Score = 40.1 bits (20), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1580 cgtacctcggccgngaccacgct 1602
||||||||||||| |||||||||
Sbjct: 23 cgtacctcggccgcgaccacgct 1
>gb|AW698714.1|AW698714 R91 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 69
Score = 40.1 bits (20), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgcta 1603
|||||||||||| ||||||||||
Sbjct: 23 gtacctcggccgcgaccacgcta 1
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 40.1 bits (20), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1580 cgtacctcggccgngaccacgct 1602
||||||||||||| |||||||||
Sbjct: 418 cgtacctcggccgcgaccacgct 440
>gb|AW698339.1|AW698339 g122 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 390
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 23 gtacctcggccgcgaccacgct 2
>gb|AW698342.1|AW698342 G2 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 182
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 161 gtacctcggccgcgaccacgct 182
>gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 181
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 160 gtacctcggccgcgaccacgct 181
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698701.1|AW698701 R154 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 366
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698712.1|AW698712 R8 non-glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 248
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 178
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 157 gtacctcggccgcgaccacgct 178
>gb|AW698899.1|AW698899 r7 non-glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 421
Score = 38.2 bits (19), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgct 1602
|||||||||||| |||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 225
Score = 36.2 bits (18), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacgc 1601
|||||||||||| ||||||||
Sbjct: 21 gtacctcggccgcgaccacgc 1
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 36.2 bits (18), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1582 tacctcggccgngaccacgct 1602
||||||||||| |||||||||
Sbjct: 336 tacctcggccgcgaccacgct 356
>gb|AW698693.1|AW698693 R140 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 380
Score = 36.2 bits (18), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1582 tacctcggccgngaccacgct 1602
||||||||||| |||||||||
Sbjct: 21 tacctcggccgcgaccacgct 1
>gb|AW698709.1|AW698709 R84 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 351
Score = 36.2 bits (18), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1582 tacctcggccgngaccacgct 1602
||||||||||| |||||||||
Sbjct: 21 tacctcggccgcgaccacgct 1
>gb|AW698893.1|AW698893 r166 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 227
Score = 36.2 bits (18), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1581 gtacctcggccgngaccacgc 1601
|||||||||||| ||||||||
Sbjct: 207 gtacctcggccgcgaccacgc 227
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 34.2 bits (17), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1582 tacctcggccgngaccacgc 1601
||||||||||| ||||||||
Sbjct: 20 tacctcggccgcgaccacgc 1
>gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 343
Score = 34.2 bits (17), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1581 gtacctcggccgngaccacg 1600
||||||||||||||||||||
Sbjct: 22 gtacctcggccgngaccacg 3
>gb|CO511892.1|CO511892 s13dSG05C0100006_103684 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 95
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 431 cttcaagaaccaccaga 447
|||||||||||||||||
Sbjct: 64 cttcaagaaccaccaga 48
>gb|CO515087.1|CO515087 s13dSG40A0200017_399039 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 335
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1452 actggtggaaggaaagt 1468
|||||||||||||||||
Sbjct: 324 actggtggaaggaaagt 308
>gb|U18239.1|MSU18239 Medicago sativa 6-phosphogluconate dehydrogenase mRNA, complete cds
Length = 1618
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 191 cctaacatcatcaatca 207
|||||||||||||||||
Sbjct: 1005 cctaacatcatcaatca 989
>gb|AY466444.1| Medicago sativa ADP-ribosylation factor (ARF1) mRNA, complete cds
Length = 921
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 431 cttcaagaaccaccaga 447
|||||||||||||||||
Sbjct: 653 cttcaagaaccaccaga 637
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3511
Number of Sequences: 7669
Number of extensions: 3511
Number of successful extensions: 953
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 32
length of query: 1603
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1587
effective length of database: 3,623,002
effective search space: 5749704174
effective search space used: 5749704174
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)