BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418879.2.1
(1083 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698879.1|AW698879 r109 non-glandular-haired subtracted... 58 1e-008
gb|CO514483.1|CO514483 s13dSG43C0600040_327626 Glandular tr... 40 0.003
gb|CO514869.1|CO514869 s13dSG56C1100086_328398 Glandular tr... 34 0.20
>gb|AW698879.1|AW698879 r109 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 205
Score = 58.0 bits (29), Expect = 1e-008
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 249 ggccgcaagatcatcatcgacacctacggcggctggggagcccacggcgggggcgccttc 308
|||||||||||||||||||| |||||||| || ||||| || ||||| || || || |||
Sbjct: 6 ggccgcaagatcatcatcgatacctacggtggttggggtgcacacggtggtggtgctttc 65
Query: 309 tccgg 313
|||||
Sbjct: 66 tccgg 70
>gb|CO514483.1|CO514483 s13dSG43C0600040_327626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.003
Identities = 89/112 (79%)
Strand = Plus / Plus
Query: 445 tgtccgtgttcgtcgactcctacggcaccgggaccatccccgacaaggagatcctaaaga 504
|||||||||| || || || ||||| ||||| | ||||| |||||||| ||||| || |
Sbjct: 154 tgtccgtgtttgttgattcttacggtaccggaaagatccctgacaaggaaatccttaaca 213
Query: 505 tcgtcaaggagaacttcgacttcaggccagggatgatcaccatcaacctcga 556
| || || || ||| ||||||||||| || |||||| | |||||||||||
Sbjct: 214 ttgtgaaagaatcctttgacttcaggcctggaatgatctctatcaacctcga 265
>gb|CO514869.1|CO514869 s13dSG56C1100086_328398 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 816 agagagatggtgaagaa 832
|||||||||||||||||
Sbjct: 38 agagagatggtgaagaa 22
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1933
Number of Sequences: 7669
Number of extensions: 1933
Number of successful extensions: 595
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 3
length of query: 1083
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1067
effective length of database: 3,623,002
effective search space: 3865743134
effective search space used: 3865743134
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)