BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405341.2.2
(1164 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY327888.1| Medicago sativa putative proline oxidase gen... 36 0.054
gb|AY556385.1| Medicago sativa proline dehydrogenase gene, ... 36 0.054
gb|AY556386.1| Medicago sativa proline dehydrogenase mRNA, ... 36 0.054
emb|CQ841300.1| Sequence 1 from Patent WO2004061112 36 0.054
emb|CQ841301.1| Sequence 2 from Patent WO2004061112 36 0.054
gb|CO514348.1|CO514348 s13dSG84D1100090_157358 Glandular tr... 34 0.21
>gb|AY327888.1| Medicago sativa putative proline oxidase gene, partial cds
Length = 417
Score = 36.2 bits (18), Expect = 0.054
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 133 aaaacaaatgaagggtct 150
||||||||||||||||||
Sbjct: 80 aaaacaaatgaagggtct 63
>gb|AY556385.1| Medicago sativa proline dehydrogenase gene, complete cds
Length = 2596
Score = 36.2 bits (18), Expect = 0.054
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 133 aaaacaaatgaagggtct 150
||||||||||||||||||
Sbjct: 1361 aaaacaaatgaagggtct 1344
>gb|AY556386.1| Medicago sativa proline dehydrogenase mRNA, complete cds
Length = 1852
Score = 36.2 bits (18), Expect = 0.054
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 133 aaaacaaatgaagggtct 150
||||||||||||||||||
Sbjct: 758 aaaacaaatgaagggtct 741
>emb|CQ841300.1| Sequence 1 from Patent WO2004061112
Length = 2596
Score = 36.2 bits (18), Expect = 0.054
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 133 aaaacaaatgaagggtct 150
||||||||||||||||||
Sbjct: 1361 aaaacaaatgaagggtct 1344
>emb|CQ841301.1| Sequence 2 from Patent WO2004061112
Length = 1476
Score = 36.2 bits (18), Expect = 0.054
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 133 aaaacaaatgaagggtct 150
||||||||||||||||||
Sbjct: 653 aaaacaaatgaagggtct 636
>gb|CO514348.1|CO514348 s13dSG84D1100090_157358 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 510
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 520 aggaacatttggttatc 536
|||||||||||||||||
Sbjct: 220 aggaacatttggttatc 204
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3248
Number of Sequences: 7669
Number of extensions: 3248
Number of successful extensions: 1374
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 6
length of query: 1164
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1148
effective length of database: 3,623,002
effective search space: 4159206296
effective search space used: 4159206296
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)