BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2405110.2.1
         (945 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO514801.1|CO514801  s13dSG59D0300030_328262 Glandular tr...    42   7e-004
gb|CO512153.1|CO512153  s13dSG34E0900067_108626 Glandular tr...    38   0.011
gb|AW698442.1|AW698442  G296 glandular-haired subtracted cDN...    36   0.043
gb|AW698617.1|AW698617  g513 glandular-haired subtracted cDN...    36   0.043
gb|CO515082.1|CO515082  s13dSG97H0200028_397669 Glandular tr...    34   0.17 

>gb|CO514801.1|CO514801 s13dSG59D0300030_328262 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 586

 Score = 42.1 bits (21), Expect = 7e-004
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 560 gctgggctccactgatctttcagaatgtc 588
           |||||||||||||| || |||||||||||
Sbjct: 371 gctgggctccactgttccttcagaatgtc 343



>gb|CO512153.1|CO512153 s13dSG34E0900067_108626 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 582

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 566 ctccactgatctttcagaatgtc 588
           |||||||| ||||||||||||||
Sbjct: 365 ctccactgctctttcagaatgtc 343



>gb|AW698442.1|AW698442 G296 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 345

 Score = 36.2 bits (18), Expect = 0.043
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 556 aagggctgggctccactgatctttcagaat 585
           |||||| || ||||||| ||||||||||||
Sbjct: 15  aagggcgggactccacttatctttcagaat 44



>gb|AW698617.1|AW698617 g513 glandular-haired subtracted cDNA library Medicago sativa cDNA,
           mRNA sequence
          Length = 344

 Score = 36.2 bits (18), Expect = 0.043
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 556 aagggctgggctccactgatctttcagaat 585
           |||||| || ||||||| ||||||||||||
Sbjct: 15  aagggcaggactccacttatctttcagaat 44



>gb|CO515082.1|CO515082 s13dSG97H0200028_397669 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 479

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 102 gacacaacagcaaaaga 118
           |||||||||||||||||
Sbjct: 137 gacacaacagcaaaaga 153



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1706
Number of Sequences: 7669
Number of extensions: 1706
Number of successful extensions: 538
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 6
length of query: 945
length of database: 3,745,706
effective HSP length: 16
effective length of query: 929
effective length of database: 3,623,002
effective search space: 3365768858
effective search space used: 3365768858
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)