BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF512999.1| Medicago sativa TPR1 (tpr1) mRNA, complete cds 86 6e-017
>gb|AF512999.1| Medicago sativa TPR1 (tpr1) mRNA, complete cds
Length = 1264
Score = 85.7 bits (43), Expect = 6e-017
Identities = 235/299 (78%)
Strand = Plus / Minus
Query: 614 gtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtac 673
||||||| ||||| ||||||||||||||||| || |||| ||||| |||| || ||
Sbjct: 749 gtttccaaagccttttcatattctttcatgaaaaactgaaccgcacccttccgggtataa 690
Query: 674 cctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggc 733
|| || |||||||| ||||| || |||| ||||||||||||||| || | ||||||||||
Sbjct: 689 cccttggtgaaggtcgggtcaagctcaatacacttctctgcatcctttaaaccttcaggc 630
Query: 734 atggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttggg 793
|| || || | || ||||| || ||||| || || || ||| || |||||| || |||
Sbjct: 629 attgcccccagttttgtgtaacatgcagctctgttactataagccttaggatttttcggg 570
Query: 794 tttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaag 853
||||| || | || ||| ||||| || || || ||||| || || || |||| ||| |||
Sbjct: 569 tttctttttatagactctgtgtaatgcttaatagcttcaggatacttctgctgcttaaag 510
Query: 854 aactcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttg 912
| || || ||||| |||||||||||||| || || |||||||| |||| ||||||||
Sbjct: 509 tattcattccctttttctctctcctcatcagccaaatttggatcgaagtattcttgttg 451
Score = 42.1 bits (21), Expect = 9e-004
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcat 477
||||||||||| | |||||| ||| |||||||| |||||||| ||||||||
Sbjct: 938 acctgtctcataacagggtcttgaaggatgttctgaatctctggatcttgcat 886
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2990
Number of Sequences: 7669
Number of extensions: 2990
Number of successful extensions: 957
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 7
length of query: 1151
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1135
effective length of database: 3,623,002
effective search space: 4112107270
effective search space used: 4112107270
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)