BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF512999.1| Medicago sativa TPR1 (tpr1) mRNA, complete cds 139 4e-033
gb|CO517265.1|CO517265 s13dSG32G0800068_486126 Glandular tr... 36 0.043
>gb|AF512999.1| Medicago sativa TPR1 (tpr1) mRNA, complete cds
Length = 1264
Score = 139 bits (70), Expect = 4e-033
Identities = 298/374 (79%)
Strand = Plus / Minus
Query: 451 tcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggcc 510
||||||| |||||||||||| | ||||| ||||| || ||||||| ||||||| |||
Sbjct: 797 tcaagcaattcctggttgtttgcatcatgtttcaacccttcctggtatgtttccaaagcc 738
Query: 511 ttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttggtgaag 570
|| ||||||||||||||||| ||||||| ||||| |||| ||||| || |||||||||
Sbjct: 737 ttttcatattctttcatgaaaaactgaaccgcacccttccgggtataacccttggtgaag 678
Query: 571 gtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggctcctaac 630
|| |||||||| |||| |||||| ||||| || || | |||||||||||| || || |
Sbjct: 677 gtcgggtcaagctcaatacacttctctgcatcctttaaaccttcaggcattgcccccagt 618
Query: 631 ttggtgtagcaggcggccctattgctataaaccctaggatccttcgggtttctcttgaga 690
|| ||||| || || || || || |||||| || |||||| ||||||||||| || | |
Sbjct: 617 tttgtgtaacatgcagctctgttactataagccttaggatttttcgggtttctttttata 558
Query: 691 gcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttgcct 750
| ||| ||||| || || || ||||| || || || |||| ||| ||| | || || |||
Sbjct: 557 gactctgtgtaatgcttaatagcttcaggatacttctgctgcttaaagtattcattccct 498
Query: 751 ttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactctttc 810
|| |||||||||||||| ||||| |||||||| | | |||||||| |||| ||||||
Sbjct: 497 ttttctctctcctcatcagccaaatttggatcgaagtattcttgttgttctagttctttc 438
Query: 811 tttgctttctcagc 824
|| || ||||||||
Sbjct: 437 ttggccttctcagc 424
>gb|CO517265.1|CO517265 s13dSG32G0800068_486126 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 600
Score = 36.2 bits (18), Expect = 0.043
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 808 ttctttgctttctcagcc 825
||||||||||||||||||
Sbjct: 509 ttctttgctttctcagcc 526
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2351
Number of Sequences: 7669
Number of extensions: 2351
Number of successful extensions: 714
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 3
length of query: 932
length of database: 3,745,706
effective HSP length: 16
effective length of query: 916
effective length of database: 3,623,002
effective search space: 3318669832
effective search space used: 3318669832
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)