BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276392.2.1
(644 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514508.1|CO514508 s13dSG43E0900069_327676 Glandular tr... 86 4e-017
gb|AW698456.1|AW698456 g409 glandular-haired subtracted cDN... 34 0.12
>gb|CO514508.1|CO514508 s13dSG43E0900069_327676 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 85.7 bits (43), Expect = 4e-017
Identities = 226/287 (78%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagacacctggtgggaaactt 151
||||||||||| |||||||| ||||| | | || ||||| || |||||||| || |||
Sbjct: 98 cacagctacgcaaccaaatccaaccaacacagggttgtcaaaacccctggtggtaagctt 157
Query: 152 gtgtaccagtacaccaagaagcgcgcgagcggaccgaagtgcccagtcaccgggaagaag 211
|| || ||| || |||||| | || |||||||| |||||||| || || || ||||
Sbjct: 158 gtttatcagactactaagaagagagctagcggacctaagtgccctgttactggcaagaga 217
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtccaggttggcaaggaac 271
|| ||||||||||||||| |||| ||| | ||||||||||| || |||||| | || |||
Sbjct: 218 attcaaggaattccacacttgaggcctacagagtacaagagatcaaggttgcctagaaac 277
Query: 272 caaaggactgtgaatcgtccatatggcggtgttctgtctggtactgcagttagggagagg 331
| ||||||||||| ||| | |||||||| ||| ||||||| ||| ||| |||| |||
Sbjct: 278 cgtaggactgtgaaccgtgcttatggcggagttttgtctggaggtgctgttcgggaaagg 337
Query: 332 atcatccgcgcctttttggttgaggaacagaagatagtgaagaaggt 378
||||| | || || |||||||| || || ||||| ||||| |||||
Sbjct: 338 atcattagggctttcttggttgaagagcaaaagattgtgaaaaaggt 384
>gb|AW698456.1|AW698456 g409 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 220
Score = 34.2 bits (17), Expect = 0.12
Identities = 44/53 (83%)
Strand = Plus / Minus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgag 234
||||| |||||||| || || || |||| || ||||||||||||||| ||||
Sbjct: 64 ggacctaagtgccctgttacaggcaagagaattcaaggaattccacacttgag 12
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1281
Number of Sequences: 7669
Number of extensions: 1281
Number of successful extensions: 403
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 2
length of query: 644
length of database: 3,745,706
effective HSP length: 16
effective length of query: 628
effective length of database: 3,623,002
effective search space: 2275245256
effective search space used: 2275245256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)