BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192958.2.1
(1629 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ248336.1|AJ248336 AJ248336 Medicago sativa subsp. x va... 125 1e-028
gb|CO513103.1|CO513103 s13dSG89H0300028_122132 Glandular tr... 113 4e-025
emb|AJ000995.1|MSDNAJ Medicago sativa mRNA for DnaJ-like pr... 62 1e-009
gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDN... 60 5e-009
gb|AW698418.1|AW698418 G266 glandular-haired subtracted cDN... 58 2e-008
gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein Ms... 52 1e-006
emb|Z71997.1|MSDNAJLP M.sativa mRNA for DnaJ-like protein 50 5e-006
gb|CO513997.1|CO513997 s13dSG72B0300025_156656 Glandular tr... 34 0.30
gb|CO515288.1|CO515288 s13dSG48B1100093_417635 Glandular tr... 34 0.30
>gb|AJ248336.1|AJ248336 AJ248336 Medicago sativa subsp. x varia young root nodule Medicago
sativa subsp. x varia cDNA clone MsNod658, mRNA sequence
Length = 1004
Score = 125 bits (63), Expect = 1e-028
Identities = 204/251 (81%)
Strand = Plus / Minus
Query: 578 aagtgaatgtacagcttgcccttcatgaagggcctctgatacatgggcatgccttcatcg 637
||||||||||| |||||||||||||| || |||||||| ||||| ||||| || ||||||
Sbjct: 541 aagtgaatgtaaagcttgcccttcataaatggcctctggtacatcggcattccctcatcg 482
Query: 638 ttgattgccttgaaagaatcaggcttcacaacttcaccagggttcgatttgatcagcagc 697
|| || |||||| | ||||||||||| |||||||| || |||||||||||||| || ||
Sbjct: 481 ttaatagccttgtatgaatcaggcttgacaacttctccggggttcgatttgataagaagt 422
Query: 698 tgcctgttatccaagtgagtcagaacaaactggaagccacacagagattcagtcaaggtc 757
|| | |||||||||||| || ||||| ||||| ||||||| || ||||| | | |
Sbjct: 421 tggcgaccatccaagtgagtaagcacaaattggaaaccacacaaagcctcagtaagagac 362
Query: 758 agtgtgtgctcgtagaagaggtcatcgccctttctcttgaacttgggatgctccttctgc 817
||||||||||| || ||||| || | |||||| ||||||||||| || || ||||||
Sbjct: 361 agtgtgtgctctacaaaaaggtcttcactctttcttttgaacttggggtgttctttctgc 302
Query: 818 tggagaacaaa 828
|| || |||||
Sbjct: 301 tgaagcacaaa 291
Score = 99.6 bits (50), Expect = 6e-021
Identities = 155/190 (81%)
Strand = Plus / Minus
Query: 889 tgcttcatcagcttcgccagggaatgtgatcttctgcccgttctgcatacctttctcaac 948
||||||||| ||||| ||||||||||| |||||||| | ||||||||| |||||||| ||
Sbjct: 263 tgcttcatcggcttcaccagggaatgtaatcttctgactgttctgcattcctttctcgac 204
Query: 949 taccacttcaagaactttcttctccggcacaactttatcacctttgcattgtgggcatct 1008
|||||||| ||||||||||| | ||||| || || || ||||| ||||| || |
Sbjct: 203 atgaacttcaagtactttcttctcttgtacaaccttctctcccttgcactgtggacagcg 144
Query: 1009 atccttatcgctgatggtctctccagaacccttgcactcattgcaaggatgctgcatttg 1068
|| ||||| |||| || || || | |||||| || |||||||||||||||||||||||
Sbjct: 143 gtctttatcattgatagtttcaccggtacccttacattcattgcaaggatgctgcatttg 84
Query: 1069 ctgaatcatt 1078
||| ||||||
Sbjct: 83 ctggatcatt 74
Score = 65.9 bits (33), Expect = 8e-011
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 337 ctactgctgggcgcactgcaccctctgcccaccgcctggcacatcatcatcctcgtcgta 396
|||||||||||||||||| |||||||| | || || |||| ||||||||||||||| ||
Sbjct: 782 ctactgctgggcgcactgtaccctctgtgccccaccaggcatatcatcatcctcgtcata 723
Query: 397 ggcctcctggtggtgctgctg 417
|| ||||| || ||||||||
Sbjct: 722 tgcttcctgttgttgctgctg 702
>gb|CO513103.1|CO513103 s13dSG89H0300028_122132 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 113 bits (57), Expect = 4e-025
Identities = 108/125 (86%)
Strand = Plus / Minus
Query: 1373 ccacctcccattccctccttgagggcatcctcaccatattgatcataaatctctcgcttt 1432
||||| |||||||| ||||| || ||||||||||||||| ||||||||| || |||||
Sbjct: 335 ccaccacccattccttccttaagagcatcctcaccatatgtatcataaatatcacgcttc 276
Query: 1433 tcaggatcactgaggacctcataagcctgagctagctccttgaacttctcgggatcgccg 1492
||||||||||| | ||||||||||| || |||||||| ||||||||||||||||| ||
Sbjct: 275 tcaggatcactcaaaacctcataagcttgtgctagctctttgaacttctcgggatcacca 216
Query: 1493 ccctt 1497
|||||
Sbjct: 215 ccctt 211
Score = 60.0 bits (30), Expect = 5e-009
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1199 agagagagcttctttgatgtgccattgtacaaatcctccagagaaacctttagaggatga 1258
||||| |||||||| ||||| ||| ||| | |||||||| ||| ||||| |||||||||
Sbjct: 500 agagaaagcttcttagatgttccaaggtaaagatcctccaaagagaccttgagaggatga 441
Query: 1259 accacatcctctcc 1272
|||||||| |||||
Sbjct: 440 accacatcttctcc 427
>emb|AJ000995.1|MSDNAJ Medicago sativa mRNA for DnaJ-like protein
Length = 1545
Score = 61.9 bits (31), Expect = 1e-009
Identities = 130/163 (79%)
Strand = Plus / Minus
Query: 1379 cccattccctccttgagggcatcctcaccatattgatcataaatctctcgcttttcagga 1438
|||||||| || || |||||||| ||||||||||||||||| | ||| ||||||||||
Sbjct: 308 cccattccttctttaagggcatcttcaccatattgatcatacagttctttcttttcagga 249
Query: 1439 tcactgaggacctcataagcctgagctagctccttgaacttctcgggatcgccgcccttg 1498
|| || | || ||||| || || | | ||||||||||||||| ||||| || |||||
Sbjct: 248 tcgctcaacacttcatatgcttggcccaactccttgaacttctcaggatccccaccctta 189
Query: 1499 tcggggtggttcttgatggcggccttgcggtaggccttcttga 1541
|| || |||||||| || || ||||| | ||||| |||||||
Sbjct: 188 tctggatggttcttcatcgctgcctttctataggctttcttga 146
>gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 60.0 bits (30), Expect = 5e-009
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 559 gtccgggaactccaccgaaaagtgaatgtacagcttgcccttcatgaagggcctctgata 618
||||| ||| ||||| | |||||||||||| |||||||||||||| || |||||||| ||
Sbjct: 227 gtccgtgaattccacagtaaagtgaatgtaaagcttgcccttcataaatggcctctggta 286
Query: 619 ca 620
||
Sbjct: 287 ca 288
>gb|AW698418.1|AW698418 G266 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 273
Score = 58.0 bits (29), Expect = 2e-008
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 563 gggaactccaccgaaaagtgaatgtacagcttgcccttcatgaagggcctctg 615
||||| ||||| | |||||||||||| |||||||||||||| || ||||||||
Sbjct: 211 gggaattccacagtaaagtgaatgtaaagcttgcccttcataaatggcctctg 263
Score = 34.2 bits (17), Expect = 0.30
Identities = 38/45 (84%)
Strand = Plus / Plus
Query: 374 ggcacatcatcatcctcgtcgtaggcctcctggtggtgctgctgc 418
|||| ||||||||||||||| || || ||||| || || ||||||
Sbjct: 19 ggcatatcatcatcctcgtcatatgcttcctgttgttgttgctgc 63
>gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein MsJ1 gene, complete cds
Length = 4449
Score = 52.0 bits (26), Expect = 1e-006
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1379 cccattccctccttgagggcatcctcaccatattgatcataaatctctcgcttttcagga 1438
|||||||| || || |||||||| ||||||||||||||||| | ||| ||||||||||
Sbjct: 1079 cccattccttctttaagggcatcttcaccatattgatcatacagttctttcttttcagga 1020
Query: 1439 tc 1440
||
Sbjct: 1019 tc 1018
>emb|Z71997.1|MSDNAJLP M.sativa mRNA for DnaJ-like protein
Length = 513
Score = 50.1 bits (25), Expect = 5e-006
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1379 cccattccctccttgagggcatcctcaccatattgatcata 1419
|||||||| || || |||||||| |||||||||||||||||
Sbjct: 67 cccattccttctttaagggcatcttcaccatattgatcata 27
>gb|CO513997.1|CO513997 s13dSG72B0300025_156656 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 207
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1368 ctccaccacctcccatt 1384
|||||||||||||||||
Sbjct: 103 ctccaccacctcccatt 87
>gb|CO515288.1|CO515288 s13dSG48B1100093_417635 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 956 tcaagaactttcttctc 972
|||||||||||||||||
Sbjct: 290 tcaagaactttcttctc 274
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3839
Number of Sequences: 7669
Number of extensions: 3839
Number of successful extensions: 927
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 32
length of query: 1629
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1613
effective length of database: 3,623,002
effective search space: 5843902226
effective search space used: 5843902226
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)