BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2192701.2.2
         (654 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ410118.1|AJ410118  AJ410118 Medicago sativa library (Ka...    52   5e-007
gb|CO511756.1|CO511756  s13dSG01G0100008_103412 Glandular tr...    34   0.12 
gb|CO514341.1|CO514341  s13dSG84D0400030_157344 Glandular tr...    34   0.12 
gb|CO514072.1|CO514072  s13dSG75A0300017_156806 Glandular tr...    32   0.47 

>gb|AJ410118.1|AJ410118 AJ410118 Medicago sativa library (Kalo P) Medicago sativa cDNA
           clone U380, mRNA sequence
          Length = 672

 Score = 52.0 bits (26), Expect = 5e-007
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
           ||||| ||||||||||||||||| ||| |  ||||||| |||||||||||
Sbjct: 302 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 351



>gb|CO511756.1|CO511756 s13dSG01G0100008_103412 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 535

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 39  ttctccccacctttggt 55
           |||||||||||||||||
Sbjct: 104 ttctccccacctttggt 120



>gb|CO514341.1|CO514341 s13dSG84D0400030_157344 Glandular trichomes Medicago sativa cDNA,
          mRNA sequence
          Length = 534

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 5  ctctcaaatatctctca 21
          |||||||||||||||||
Sbjct: 22 ctctcaaatatctctca 38



>gb|CO514072.1|CO514072 s13dSG75A0300017_156806 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 593

 Score = 32.2 bits (16), Expect = 0.47
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 532 ttattactagtataatgcta 551
           |||||| |||||||||||||
Sbjct: 39  ttattaatagtataatgcta 20



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1021
Number of Sequences: 7669
Number of extensions: 1021
Number of successful extensions: 185
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 4
length of query: 654
length of database: 3,745,706
effective HSP length: 16
effective length of query: 638
effective length of database: 3,623,002
effective search space: 2311475276
effective search space used: 2311475276
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)