BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161295.2.1
(1475 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516573.1|CO516573 s13dSG57G0500037_446474 Glandular tr... 34 0.27
gb|CO512472.1|CO512472 s13dSG100D080006_114458 Glandular tr... 32 1.1
gb|AF222048.1|AF222048 AF222048 Medicago sativa RAPD Medica... 30 4.2
gb|AW698706.1|AW698706 R172 non-glandular-haired subtracted... 30 4.2
gb|CO511751.1|CO511751 s13dSG01F0700063_103402 Glandular tr... 30 4.2
gb|CO511865.1|CO511865 s13dSG02H0600060_103630 Glandular tr... 30 4.2
gb|CO511942.1|CO511942 s13dSG05H0200028_103784 Glandular tr... 30 4.2
gb|CO512694.1|CO512694 s13dSG19E0600039_121314 Glandular tr... 30 4.2
gb|CO513174.1|CO513174 s13dSG23G0300020_129512 Glandular tr... 30 4.2
gb|CO517193.1|CO517193 s13dSG33G0600052_474470 Glandular tr... 30 4.2
gb|U20431.1|MSU20431 Medicago sativa polygalacturonase mRNA... 30 4.2
gb|L25334.1|ALFAAT1A Medicago sativa aspartate aminotransfe... 30 4.2
emb|AJ418377.1|MSA418377 Medicago sativa mRNA for nodulatio... 30 4.2
gb|AY219848.1| Medicago sativa polygalactorunase PG11 precu... 30 4.2
emb|AX776635.1| Sequence 4 from Patent WO02102841 30 4.2
>gb|CO516573.1|CO516573 s13dSG57G0500037_446474 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 426
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1445 aaaatgcagcaagcatt 1461
|||||||||||||||||
Sbjct: 211 aaaatgcagcaagcatt 195
>gb|CO512472.1|CO512472 s13dSG100D080006_114458 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 543
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1089 aaatgaatcagccaga 1104
||||||||||||||||
Sbjct: 388 aaatgaatcagccaga 373
>gb|AF222048.1|AF222048 AF222048 Medicago sativa RAPD Medicago sativa genomic clone
pCR2.1-V2/1, DNA sequence
Length = 1078
Score = 30.2 bits (15), Expect = 4.2
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 794 ctaacctcaaggttggcaccacg 816
|||| ||||||||||||| ||||
Sbjct: 902 ctaagctcaaggttggcaacacg 924
>gb|AW698706.1|AW698706 R172 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 436
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1215 aaggcaaaggccact 1229
|||||||||||||||
Sbjct: 129 aaggcaaaggccact 115
>gb|CO511751.1|CO511751 s13dSG01F0700063_103402 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 486
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 340 ggtggtggcagtagc 354
|||||||||||||||
Sbjct: 202 ggtggtggcagtagc 216
>gb|CO511865.1|CO511865 s13dSG02H0600060_103630 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 527
Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 142 ctgagaaagaaaaaataca 160
|||| ||||||||||||||
Sbjct: 201 ctgataaagaaaaaataca 219
>gb|CO511942.1|CO511942 s13dSG05H0200028_103784 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 586
Score = 30.2 bits (15), Expect = 4.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1237 caacttttgtgttgttgaa 1255
|||| ||||||||||||||
Sbjct: 361 caacgtttgtgttgttgaa 379
>gb|CO512694.1|CO512694 s13dSG19E0600039_121314 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 648 aaacatattggaaac 662
|||||||||||||||
Sbjct: 14 aaacatattggaaac 28
>gb|CO513174.1|CO513174 s13dSG23G0300020_129512 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 563
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 699 gctccttcctcagtg 713
|||||||||||||||
Sbjct: 256 gctccttcctcagtg 242
>gb|CO517193.1|CO517193 s13dSG33G0600052_474470 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 584
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 430 cttggcaagctcaag 416
>gb|U20431.1|MSU20431 Medicago sativa polygalacturonase mRNA, complete cds
Length = 1492
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 287 caaaaatttccatgt 301
|||||||||||||||
Sbjct: 534 caaaaatttccatgt 548
>gb|L25334.1|ALFAAT1A Medicago sativa aspartate aminotransferase (AAT1) gene, complete cds
Length = 5474
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1350 gatcatgaagcaaag 1364
|||||||||||||||
Sbjct: 405 gatcatgaagcaaag 391
>emb|AJ418377.1|MSA418377 Medicago sativa mRNA for nodulation receptor kinase (nork gene),
mutant allele nn1
Length = 3337
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 atgctatgctctcaa 64
|||||||||||||||
Sbjct: 355 atgctatgctctcaa 341
>gb|AY219848.1| Medicago sativa polygalactorunase PG11 precursor, gene, complete cds
Length = 2213
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 287 caaaaatttccatgt 301
|||||||||||||||
Sbjct: 1269 caaaaatttccatgt 1283
>emb|AX776635.1| Sequence 4 from Patent WO02102841
Length = 3378
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 atgctatgctctcaa 64
|||||||||||||||
Sbjct: 376 atgctatgctctcaa 362
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3372
Number of Sequences: 7669
Number of extensions: 3372
Number of successful extensions: 907
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 25
length of query: 1475
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1459
effective length of database: 3,623,002
effective search space: 5285959918
effective search space used: 5285959918
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)