BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.22
(333 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DQ122768.1| Medicago sativa clone QD12 clathrin heavy ch... 30 0.92
gb|CB165074.1|CB165074 01 Alfalfa developing flower bud lib... 28 3.6
gb|CO513275.1|CO513275 s13dSG37A1200085_129714 Glandular tr... 28 3.6
gb|CO516769.1|CO516769 s13dSG94B1000079_446866 Glandular tr... 28 3.6
gb|CO517295.1|CO517295 s13dSG45D0100014_486186 Glandular tr... 28 3.6
gb|AF191301.1|AF191301 Medicago sativa carbamoyl-phosphate ... 28 3.6
>gb|DQ122768.1| Medicago sativa clone QD12 clathrin heavy chain mRNA, partial cds
Length = 531
Score = 30.2 bits (15), Expect = 0.92
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 gctggacaactttga 54
|||||||||||||||
Sbjct: 468 gctggacaactttga 482
>gb|CB165074.1|CB165074 01 Alfalfa developing flower bud library Medicago sativa cDNA, mRNA
sequence
Length = 349
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 76 acgttatggcattg 89
||||||||||||||
Sbjct: 271 acgttatggcattg 284
>gb|CO513275.1|CO513275 s13dSG37A1200085_129714 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 gaaagagttcaaca 161
||||||||||||||
Sbjct: 228 gaaagagttcaaca 215
>gb|CO516769.1|CO516769 s13dSG94B1000079_446866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 509
Score = 28.2 bits (14), Expect = 3.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 45 acaactttgaatggtttg 62
||||||||||| ||||||
Sbjct: 387 acaactttgaagggtttg 404
>gb|CO517295.1|CO517295 s13dSG45D0100014_486186 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 596
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 aatgtgcaaggcta 24
||||||||||||||
Sbjct: 566 aatgtgcaaggcta 553
>gb|AF191301.1|AF191301 Medicago sativa carbamoyl-phosphate synthase subunit A (carA) and
ADP-forming, carbamate-phosphorylating (carB) genes,
complete cds
Length = 5330
Score = 28.2 bits (14), Expect = 3.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 gttcaacaccgcga 167
||||||||||||||
Sbjct: 242 gttcaacaccgcga 255
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 333
Number of Sequences: 7669
Number of extensions: 333
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 6
length of query: 333
length of database: 3,745,706
effective HSP length: 15
effective length of query: 318
effective length of database: 3,630,671
effective search space: 1154553378
effective search space used: 1154553378
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)