BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161272.2.19
         (1410 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO511862.1|CO511862  s13dSG02H0200028_103624 Glandular tr...    34   0.26 
gb|CO512652.1|CO512652  s13dSG19A0100001_121230 Glandular tr...    34   0.26 
gb|CO512901.1|CO512901  s13dSG86B0300025_121728 Glandular tr...    34   0.26 
gb|CO515480.1|CO515480  s13dSG52A1000081_418019 Glandular tr...    34   0.26 
gb|CO516040.1|CO516040  s13dSG64C0800066_445408 Glandular tr...    34   0.26 

>gb|CO511862.1|CO511862 s13dSG02H0200028_103624 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 540

 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1045 gtttttccttgcatctc 1061
            |||||||||||||||||
Sbjct: 70   gtttttccttgcatctc 86



>gb|CO512652.1|CO512652 s13dSG19A0100001_121230 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 245

 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1045 gtttttccttgcatctc 1061
            |||||||||||||||||
Sbjct: 67   gtttttccttgcatctc 83



>gb|CO512901.1|CO512901 s13dSG86B0300025_121728 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 533

 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1045 gtttttccttgcatctc 1061
            |||||||||||||||||
Sbjct: 68   gtttttccttgcatctc 84



>gb|CO515480.1|CO515480 s13dSG52A1000081_418019 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 523

 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1045 gtttttccttgcatctc 1061
            |||||||||||||||||
Sbjct: 68   gtttttccttgcatctc 84



>gb|CO516040.1|CO516040 s13dSG64C0800066_445408 Glandular trichomes Medicago sativa cDNA,
            mRNA sequence
          Length = 104

 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1045 gtttttccttgcatctc 1061
            |||||||||||||||||
Sbjct: 72   gtttttccttgcatctc 88



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2774
Number of Sequences: 7669
Number of extensions: 2774
Number of successful extensions: 888
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 5
length of query: 1410
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1394
effective length of database: 3,623,002
effective search space: 5050464788
effective search space used: 5050464788
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)