BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1805139.2.1
         (950 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO515246.1|CO515246  s13dSG96E0400035_399357 Glandular tr...    46   5e-005
gb|AW698788.1|AW698788  r372 non-glandular-haired subtracted...    34   0.17 
gb|CO512021.1|CO512021  s13dSG07H0700064_103942 Glandular tr...    34   0.17 
gb|CO512178.1|CO512178  s13dSG34H1100092_108676 Glandular tr...    34   0.17 
gb|CO512439.1|CO512439  s13dSG80H0800064_114392 Glandular tr...    34   0.17 
gb|CO514418.1|CO514418  s13dSG36D0500044_327496 Glandular tr...    34   0.17 
gb|CO515017.1|CO515017  s13dSG26D0500046_397539 Glandular tr...    34   0.17 
gb|CO516360.1|CO516360  s13dSG99F0200015_446048 Glandular tr...    34   0.17 

>gb|CO515246.1|CO515246 s13dSG96E0400035_399357 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 405

 Score = 46.1 bits (23), Expect = 5e-005
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 348 tcaagctggctgaagttccccttctccttgatcagctggatgtggtggtgcttgcagta 406
           ||||||||||| || || ||||| | ||||||||| || || |||||||| ||||||||
Sbjct: 80  tcaagctggctcaaatttcccttttgcttgatcagttgaatatggtggtgtttgcagta 22



>gb|AW698788.1|AW698788 r372 non-glandular-haired subtracted cDNA library Medicago sativa
           cDNA, mRNA sequence
          Length = 312

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 149 caagacaacaatatcat 165
           |||||||||||||||||
Sbjct: 69  caagacaacaatatcat 53



>gb|CO512021.1|CO512021 s13dSG07H0700064_103942 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 584

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 149 caagacaacaatatcat 165
           |||||||||||||||||
Sbjct: 296 caagacaacaatatcat 312



>gb|CO512178.1|CO512178 s13dSG34H1100092_108676 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 585

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 149 caagacaacaatatcat 165
           |||||||||||||||||
Sbjct: 296 caagacaacaatatcat 312



>gb|CO512439.1|CO512439 s13dSG80H0800064_114392 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 567

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 149 caagacaacaatatcat 165
           |||||||||||||||||
Sbjct: 159 caagacaacaatatcat 175



>gb|CO514418.1|CO514418 s13dSG36D0500044_327496 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 589

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 149 caagacaacaatatcat 165
           |||||||||||||||||
Sbjct: 296 caagacaacaatatcat 312



>gb|CO515017.1|CO515017 s13dSG26D0500046_397539 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 475

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 149 caagacaacaatatcat 165
           |||||||||||||||||
Sbjct: 296 caagacaacaatatcat 312



>gb|CO516360.1|CO516360 s13dSG99F0200015_446048 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 396

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 149 caagacaacaatatcat 165
           |||||||||||||||||
Sbjct: 147 caagacaacaatatcat 163



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2291
Number of Sequences: 7669
Number of extensions: 2291
Number of successful extensions: 952
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 8
length of query: 950
length of database: 3,745,706
effective HSP length: 16
effective length of query: 934
effective length of database: 3,623,002
effective search space: 3383883868
effective search space used: 3383883868
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)