BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805016.2.1
(1645 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513103.1|CO513103 s13dSG89H0300028_122132 Glandular tr... 82 1e-015
emb|AJ000995.1|MSDNAJ Medicago sativa mRNA for DnaJ-like pr... 64 3e-010
gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein Ms... 56 8e-008
emb|Z71997.1|MSDNAJLP M.sativa mRNA for DnaJ-like protein 56 8e-008
gb|AJ248336.1|AJ248336 AJ248336 Medicago sativa subsp. x va... 38 0.019
gb|AJ966532.1|AJ966532 AJ966532 Medicago sativa subsp. falc... 38 0.019
gb|CO514924.1|CO514924 s13dSG63B0300029_397353 Glandular tr... 36 0.076
>gb|CO513103.1|CO513103 s13dSG89H0300028_122132 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 81.8 bits (41), Expect = 1e-015
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 1360 cccattccttccttaagggcatcttctccatactggtcatagatctccctcttctccggg 1419
||||||||||||||||| ||||| || ||||| ||||| || || | |||||| ||
Sbjct: 329 cccattccttccttaagagcatcctcaccatatgtatcataaatatcacgcttctcagga 270
Query: 1420 tcactaagaacatcataagcttgagacagctctttaaacttctcagggtctccaccctta 1479
||||| | ||| ||||||||||| | |||||||| |||||||| || || |||||||||
Sbjct: 269 tcactcaaaacctcataagcttgtgctagctctttgaacttctcgggatcaccaccctta 210
Query: 1480 tcaggatggttttttatggcagcttttctgtatgctttctt 1520
|||||||| || || || ||||||||| | || ||||||||
Sbjct: 209 tcaggatgattcttaatagcagcttttttataagctttctt 169
>emb|AJ000995.1|MSDNAJ Medicago sativa mRNA for DnaJ-like protein
Length = 1545
Score = 63.9 bits (32), Expect = 3e-010
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 828 ttgcaagacaaaaacaatgtctcctgtaaccgtatcaggagcttcatcagcttgaccctg 887
||||||||||||||| ||||||||||| | |||||||| |||||||||||| || |
Sbjct: 837 ttgcaagacaaaaactatgtctcctgtgattgtatcagggagttcatcagcttgtccttc 778
Query: 888 gaatacaatctt 899
||||||||||||
Sbjct: 777 gaatacaatctt 766
Score = 56.0 bits (28), Expect = 8e-008
Identities = 133/168 (79%)
Strand = Plus / Minus
Query: 1353 gcctcctcccattccttccttaagggcatcttctccatactggtcatagatctccctctt 1412
|||||| ||||||||||| |||||||||||||| ||||| || ||||| | || ||||
Sbjct: 315 gcctccccccattccttctttaagggcatcttcaccatattgatcatacagttctttctt 256
Query: 1413 ctccgggtcactaagaacatcataagcttgagacagctctttaaacttctcagggtctcc 1472
|| || || || | || ||||| ||||| || ||| || ||||||||||| || ||
Sbjct: 255 ttcaggatcgctcaacacttcatatgcttggcccaactccttgaacttctcaggatcccc 196
Query: 1473 acccttatcaggatggttttttatggcagcttttctgtatgctttctt 1520
||||||||| |||||||| || || || || ||||| || ||||||||
Sbjct: 195 acccttatctggatggttcttcatcgctgcctttctataggctttctt 148
Score = 48.1 bits (24), Expect = 2e-005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 430 ctcatctcctcttctatgttgacatcgtgaagggtggtctcctc 473
|||||||||||| | || |||||||| || ||||||||||||||
Sbjct: 1235 ctcatctcctctgcaatattgacatcatgcagggtggtctcctc 1192
Score = 48.1 bits (24), Expect = 2e-005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1216 aaggaaaccttcatagtatgcaccacatcttc 1247
||||||||||| |||| |||||||||||||||
Sbjct: 449 aaggaaacctttatagaatgcaccacatcttc 418
>gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein MsJ1 gene, complete cds
Length = 4449
Score = 56.0 bits (28), Expect = 8e-008
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1353 gcctcctcccattccttccttaagggcatcttctccatactggtcata 1400
|||||| ||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 1086 gcctccccccattccttctttaagggcatcttcaccatattgatcata 1039
Score = 48.1 bits (24), Expect = 2e-005
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 430 ctcatctcctcttctatgttgacatcgtgaagggtggtctcctc 473
|||||||||||| | || |||||||| || ||||||||||||||
Sbjct: 3432 ctcatctcctctgcaatattgacatcatgcagggtggtctcctc 3389
Score = 48.1 bits (24), Expect = 2e-005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1216 aaggaaaccttcatagtatgcaccacatcttc 1247
||||||||||| |||| |||||||||||||||
Sbjct: 1322 aaggaaacctttatagaatgcaccacatcttc 1291
Score = 46.1 bits (23), Expect = 8e-005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 828 ttgcaagacaaaaacaatgtctcctgt 854
||||||||||||||| |||||||||||
Sbjct: 2951 ttgcaagacaaaaactatgtctcctgt 2925
Score = 46.1 bits (23), Expect = 8e-005
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 1458 cttctcagggtctccacccttatcaggatggttttttatggcagcttttctgtatgcttt 1517
||||||||| || ||||||||||| |||||||| || || || || ||||| || |||||
Sbjct: 210 cttctcaggatccccacccttatctggatggttcttcatcgctgcctttctataggcttt 151
Query: 1518 ctt 1520
|||
Sbjct: 150 ctt 148
Score = 36.2 bits (18), Expect = 0.076
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 870 ttcatcagcttgaccctggaatacaatctt 899
|||||||||||| || | ||||||||||||
Sbjct: 2752 ttcatcagcttgtccttcgaatacaatctt 2723
>emb|Z71997.1|MSDNAJLP M.sativa mRNA for DnaJ-like protein
Length = 513
Score = 56.0 bits (28), Expect = 8e-008
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1353 gcctcctcccattccttccttaagggcatcttctccatactggtcata 1400
|||||| ||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 74 gcctccccccattccttctttaagggcatcttcaccatattgatcata 27
Score = 48.1 bits (24), Expect = 2e-005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1216 aaggaaaccttcatagtatgcaccacatcttc 1247
||||||||||| |||| |||||||||||||||
Sbjct: 208 aaggaaacctttatagaatgcaccacatcttc 177
>gb|AJ248336.1|AJ248336 AJ248336 Medicago sativa subsp. x varia young root nodule Medicago
sativa subsp. x varia cDNA clone MsNod658, mRNA sequence
Length = 1004
Score = 38.2 bits (19), Expect = 0.019
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 910 tgcattcctttctccacatgaac 932
|||||||||||||| ||||||||
Sbjct: 220 tgcattcctttctcgacatgaac 198
>gb|AJ966532.1|AJ966532 AJ966532 Medicago sativa subsp. falcata flower buds Medicago sativa
subsp. falcata cDNA clone Em52, mRNA sequence
Length = 96
Score = 38.2 bits (19), Expect = 0.019
Identities = 41/47 (87%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 835 acaaaaacaatgtctcctgtaacc-gtatcaggagcttcatcagctt 880
||||| ||||| ||||| |||||| || |||||||||||||| ||||
Sbjct: 70 acaaacacaatatctccagtaaccagtgtcaggagcttcatcggctt 24
>gb|CO514924.1|CO514924 s13dSG63B0300029_397353 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 481
Score = 36.2 bits (18), Expect = 0.076
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 829 tgcaagacaaaaacaatg 846
||||||||||||||||||
Sbjct: 329 tgcaagacaaaaacaatg 312
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3860
Number of Sequences: 7669
Number of extensions: 3860
Number of successful extensions: 1104
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 24
length of query: 1645
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1629
effective length of database: 3,623,002
effective search space: 5901870258
effective search space used: 5901870258
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)