BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515748.1|CO515748 s13dSG77D0400042_419645 Glandular tr... 46 5e-005
gb|CO516414.1|CO516414 s13dSG27D1100092_446156 Glandular tr... 40 0.003
>gb|CO515748.1|CO515748 s13dSG77D0400042_419645 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 46.1 bits (23), Expect = 5e-005
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 145 gagttcgagttccgccccgacggcaagctccgctacgccaacaactccaactacaagaac 204
||||| |||||||| || || || ||||| || || || ||||||||||| ||||| |||
Sbjct: 136 gagtttgagttccgtccagatggtaagcttcgttatgctaacaactccaattacaaaaac 195
Query: 205 gacaccatgatccgcaaggaggt 227
|| ||||| || || ||||||||
Sbjct: 196 gataccatcattcgtaaggaggt 218
Score = 36.2 bits (18), Expect = 0.044
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 286 atgaaggaggacgacagcaactggcctgagcccgaccg 323
||||||||||| || | |||||||||||| || |||||
Sbjct: 277 atgaaggaggatgataacaactggcctgaaccagaccg 314
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 496 cacttcaagatcaagcc 512
|||||||||||||||||
Sbjct: 487 cacttcaagatcaagcc 503
>gb|CO516414.1|CO516414 s13dSG27D1100092_446156 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 385
Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 184 aacaactccaactacaagaa 203
||||||||||||||||||||
Sbjct: 301 aacaactccaactacaagaa 282
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1461
Number of Sequences: 7669
Number of extensions: 1461
Number of successful extensions: 304
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 4
length of query: 964
length of database: 3,745,706
effective HSP length: 16
effective length of query: 948
effective length of database: 3,623,002
effective search space: 3434605896
effective search space used: 3434605896
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)