BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.2
(4065 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular tr... 82 4e-015
>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 81.8 bits (41), Expect = 4e-015
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 978 agtccatttgaatgtatatagctctgagaactcctcatcatctccaccctttgatgtcac 1037
||||||||||||| | || ||||| ||||| || ||||||| | | |||||||| ||
Sbjct: 465 agtccatttgaatatgtagagctccgagaattctccatcatcggctgcttttgatgtaac 406
Query: 1038 ggtgaagcttgtatcaacaccagctatgaccttgagaagtccctggaacacagcaaagag 1097
|||||| |||| || |||||||||| |||||||| | || ||||| | ||||| |
Sbjct: 405 agtgaagtttgtgtcgacaccagctaaaaccttgagcaaaccttggaaaagggcaaaaaa 346
Query: 1098 gtgtgaggacacacctccaatgacccagaactgctcattcctccaccagtcatcaattcc 1157
||||| || |||||||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 345 atgtgatgaagcacctccaatcacccaaaactgttcattcctccaccaatcatctattcc 286
Query: 1158 aacaccactccat 1170
|||||||| ||||
Sbjct: 285 aacaccaccccat 273
Score = 73.8 bits (37), Expect = 9e-013
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 1318 gtccaaggatacacgatggagttgatgtaggaaaatctttccaaaaatttcagaccgcca 1377
|||||||||||||||| || || ||||||||||| | |||||| || |||| || |||
Sbjct: 125 gtccaaggatacacgactgaatttatgtaggaaaaacgttccaacaacttcaacccacca 66
Query: 1378 ccatacccataccaaagagggcaatgattgctgaagaagatctcaatagacccaagagcc 1437
|| || || ||||||| || ||||| |||||||| |||||||||| ||| |||||||||
Sbjct: 65 ccgtagccgtaccaaattggacaatgtttgctgaaaaagatctcaacagaaccaagagcc 6
Query: 1438 c 1438
|
Sbjct: 5 c 5
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,027
Number of Sequences: 7669
Number of extensions: 11027
Number of successful extensions: 3294
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3290
Number of HSP's gapped (non-prelim): 4
length of query: 4065
length of database: 3,745,706
effective HSP length: 17
effective length of query: 4048
effective length of database: 3,615,333
effective search space: 14634867984
effective search space used: 14634867984
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)