BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1804908.2.1
         (1118 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO514736.1|CO514736  s13dSG55E0700055_328132 Glandular tr...    36   0.051
emb|AJ245868.1|MSA245868  Medicago sativa mRNA for cysteine ...    36   0.051
gb|CO514364.1|CO514364  s13dSG84F0700059_157390 Glandular tr...    34   0.20 
gb|CO516672.1|CO516672  s13dSG74A0400021_446672 Glandular tr...    34   0.20 
gb|DR159680.1|DR159680  EST34 Medicago sativa cDNA-AFLP Medi...    34   0.20 

>gb|CO514736.1|CO514736 s13dSG55E0700055_328132 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 351

 Score = 36.2 bits (18), Expect = 0.051
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 929 tgcagcaatttggtcttc 946
           ||||||||||||||||||
Sbjct: 219 tgcagcaatttggtcttc 202



>emb|AJ245868.1|MSA245868 Medicago sativa mRNA for cysteine protease, partial (cyp15a gene)
          Length = 890

 Score = 36.2 bits (18), Expect = 0.051
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 929 tgcagcaatttggtcttc 946
           ||||||||||||||||||
Sbjct: 330 tgcagcaatttggtcttc 313



>gb|CO514364.1|CO514364 s13dSG84F0700059_157390 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 509

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 951 ttttcagaaaatggctc 967
           |||||||||||||||||
Sbjct: 369 ttttcagaaaatggctc 385



>gb|CO516672.1|CO516672 s13dSG74A0400021_446672 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 446

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 951 ttttcagaaaatggctc 967
           |||||||||||||||||
Sbjct: 305 ttttcagaaaatggctc 321



>gb|DR159680.1|DR159680 EST34 Medicago sativa cDNA-AFLP Medicago sativa cDNA clone S15 5',
            mRNA sequence
          Length = 352

 Score = 34.2 bits (17), Expect = 0.20
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1041 acagcagcagcatgagc 1057
            |||||||||||||||||
Sbjct: 259  acagcagcagcatgagc 243



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2654
Number of Sequences: 7669
Number of extensions: 2654
Number of successful extensions: 889
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 5
length of query: 1118
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1102
effective length of database: 3,623,002
effective search space: 3992548204
effective search space used: 3992548204
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)