BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716450.2.1
(2214 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514334.1|CO514334 s13dSG84C0600038_157330 Glandular tr... 119 9e-027
>gb|CO514334.1|CO514334 s13dSG84C0600038_157330 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 492
Score = 119 bits (60), Expect = 9e-027
Identities = 165/200 (82%)
Strand = Plus / Minus
Query: 1489 ttgtcccatgtctccaaagcagcaagctcgtcattgtgcttctctatcaaatcagcaaac 1548
|||| ||||| ||||| ||| |||| ||| |||||||||||||| | ||||||||||||
Sbjct: 474 ttgttccatgcctccagagctgcaatctcatcattgtgcttctcaaccaaatcagcaaaa 415
Query: 1549 cgcagtaggatacgggacctctcataggcagtcatcttcggccatggcccttcatcaaaa 1608
||||| | ||||| |||| ||||||||| |||| || ||||| || || | ||||||
Sbjct: 414 cgcagcaatatacgacacctttcataggcactcattttaggccaaggtccattatcaaag 355
Query: 1609 gccttgcgagccgcagctactgcacggttaatgtcctctgcgtcaccctcagccacatga 1668
|||| |||||| || | ||||||||||||||| || || || ||||| ||||| |||| |
Sbjct: 354 gcctcgcgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatta 295
Query: 1669 gcaatcacctcccctgtacg 1688
|||||||| |||||||||||
Sbjct: 294 gcaatcacttcccctgtacg 275
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4538
Number of Sequences: 7669
Number of extensions: 4538
Number of successful extensions: 1046
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 1
length of query: 2214
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2197
effective length of database: 3,615,333
effective search space: 7942886601
effective search space used: 7942886601
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)