BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716286.2.1
(1104 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698442.1|AW698442 G296 glandular-haired subtracted cDN... 153 3e-037
gb|AW698617.1|AW698617 g513 glandular-haired subtracted cDN... 143 3e-034
gb|AW698741.1|AW698741 r315 non-glandular-haired subtracted... 38 0.013
gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular tr... 38 0.013
gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular tr... 38 0.013
gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular tr... 38 0.013
gb|CO514801.1|CO514801 s13dSG59D0300030_328262 Glandular tr... 38 0.013
gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular tr... 38 0.013
gb|AY851389.1| Medicago sativa leaf sucrose-phosphate synth... 36 0.051
gb|CO514844.1|CO514844 s13dSG56A0300021_328348 Glandular tr... 34 0.20
>gb|AW698442.1|AW698442 G296 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 345
Score = 153 bits (77), Expect = 3e-037
Identities = 232/284 (81%)
Strand = Plus / Plus
Query: 657 cgaatctgaagtgctgggctccatttgtccttgagaatgtcgaggcatatcctaccaagc 716
||||||||||| || || ||||| || || || ||||| || || |||||||| ||||||
Sbjct: 7 cgaatctgaagggcgggactccacttatctttcagaatatcaagacatatcctgccaagc 66
Query: 717 ttgtcaatgttgggatgataaatcttggtcagaaacctaacctttggggcagccatggga 776
||||||||||| |||||||| || || |||| ||||| |||||||| |||||||| |||
Sbjct: 67 ttgtcaatgttaggatgatatatttttgtcaagaacctgacctttggagcagccattgga 126
Query: 777 tattcctcaggtaaaaagagttcaagcttaaaaactccaccttcatagggcgactgcgcc 836
||||| ||||| ||||| || || ||||| |||||||| |||||||| || ||||| |
Sbjct: 127 tattcttcaggcaaaaataggtctagcttgaaaactcccccttcataaggagactgagtt 186
Query: 837 ggcccaaggatcataacgttgaagtagcgcatgttctcctccgagggcgacgcgctgatc 896
|| ||||||||||| || ||||| || ||||| || || ||||| || || || || ||
Sbjct: 187 gggccaaggatcatcacattgaaataccgcatattgtcttccgaaggggatgcactaatt 246
Query: 897 cccggcgctggctcgctgagcagtcgctgcgtctccttgatgat 940
|| ||||||||||| ||||||| ||||| || |||||||||||
Sbjct: 247 ccaggcgctggctcactgagcanacgctgtgtttccttgatgat 290
>gb|AW698617.1|AW698617 g513 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 344
Score = 143 bits (72), Expect = 3e-034
Identities = 231/284 (81%)
Strand = Plus / Plus
Query: 657 cgaatctgaagtgctgggctccatttgtccttgagaatgtcgaggcatatcctaccaagc 716
||||||||||| || || ||||| || || || ||||| || || |||||||| ||||||
Sbjct: 7 cgaatctgaagggcaggactccacttatctttcagaatatcaagacatatcctgccaagc 66
Query: 717 ttgtcaatgttgggatgataaatcttggtcagaaacctaacctttggggcagccatggga 776
||||||||||| |||||||| || || |||| || ||||||||||| |||||||| |||
Sbjct: 67 ttgtcaatgttaggatgatatatttttgtcaagaatctaacctttggagcagccattgga 126
Query: 777 tattcctcaggtaaaaagagttcaagcttaaaaactccaccttcatagggcgactgcgcc 836
||||| ||||| ||||| ||||| ||||| |||||||| |||||||| || ||||| |
Sbjct: 127 tattcttcaggcaaaaatagttctagcttgaaaactcccccttcataaggagactgagtt 186
Query: 837 ggcccaaggatcataacgttgaagtagcgcatgttctcctccgagggcgacgcgctgatc 896
|| ||||||||||| || ||||| || ||||| || | ||||| || || || | ||
Sbjct: 187 gggccaaggatcatcacattgaaataccgcatattgacttccgaaggggatgcacgaatt 246
Query: 897 cccggcgctggctcgctgagcagtcgctgcgtctccttgatgat 940
|| ||||||||||| ||||||| ||||| || |||||||||||
Sbjct: 247 ccaggcgctggctcactgagcaaacgctgtgtttccttgatgat 290
>gb|AW698741.1|AW698741 r315 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 335
Score = 38.2 bits (19), Expect = 0.013
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgag 700
||||| |||||||||| ||||| |||||||||||
Sbjct: 89 agtgcagggctccattgttccttaagaatgtcgag 123
>gb|CO512082.1|CO512082 s13dSG18F0600047_108484 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 38.2 bits (19), Expect = 0.013
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgag 700
||||| |||||||||| ||||| |||||||||||
Sbjct: 487 agtgcagggctccattgttccttaagaatgtcgag 453
>gb|CO514307.1|CO514307 s13dSG76H0900076_157276 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 490
Score = 38.2 bits (19), Expect = 0.013
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgag 700
||||| |||||||||| ||||| |||||||||||
Sbjct: 389 agtgcagggctccattgttccttaagaatgtcgag 355
>gb|CO514742.1|CO514742 s13dSG55F0200027_328144 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 526
Score = 38.2 bits (19), Expect = 0.013
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgag 700
||||| |||||||||| ||||| |||||||||||
Sbjct: 363 agtgcagggctccattgttccttaagaatgtcgag 329
>gb|CO514801.1|CO514801 s13dSG59D0300030_328262 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 586
Score = 38.2 bits (19), Expect = 0.013
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 668 tgctgggctccatttgtccttgagaatgtcgaggcatat 706
|||||||||||| | ||||| ||||||||||| |||||
Sbjct: 372 tgctgggctccactgttccttcagaatgtcgagacatat 334
>gb|CO516470.1|CO516470 s13dSG28C0900068_446268 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 0.013
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgag 700
||||| |||||||||| ||||| |||||||||||
Sbjct: 364 agtgcagggctccattgttccttaagaatgtcgag 330
>gb|AY851389.1| Medicago sativa leaf sucrose-phosphate synthase mRNA, partial cds
Length = 645
Score = 36.2 bits (18), Expect = 0.051
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 298 gcaagttctaccacatat 315
||||||||||||||||||
Sbjct: 61 gcaagttctaccacatat 44
>gb|CO514844.1|CO514844 s13dSG56A0300021_328348 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 638
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 676 tccatttgtccttgaga 692
|||||||||||||||||
Sbjct: 607 tccatttgtccttgaga 591
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2099
Number of Sequences: 7669
Number of extensions: 2099
Number of successful extensions: 622
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 11
length of query: 1104
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1088
effective length of database: 3,623,002
effective search space: 3941826176
effective search space used: 3941826176
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)