BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716207.2.2
(754 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516263.1|CO516263 s13dSG69D0200014_445854 Glandular tr... 105 4e-023
gb|CO516472.1|CO516472 s13dSG28C1100084_446272 Glandular tr... 105 4e-023
gb|CO516674.1|CO516674 s13dSG74A0600038_446676 Glandular tr... 105 4e-023
gb|CO513029.1|CO513029 s13dSG09G0900068_121984 Glandular tr... 98 1e-020
gb|CO512382.1|CO512382 s13dSG80C0600038_114278 Glandular tr... 36 0.034
>gb|CO516263.1|CO516263 s13dSG69D0200014_445854 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 105 bits (53), Expect = 4e-023
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 108 aagccggccaagtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagcta 167
||||| ||||| || || |||||||| || |||||||||||||||||||||||||||| |
Sbjct: 123 aagccagccaaatctggcggtggcaaacagaagaagaagaagtggagcaagggaaagcaa 182
Query: 168 aaggagaaggtaaacaacgcggtgctgttcgaccaggctacctacgacaagct 220
|||||||| || |||||| ||||||||| || |||| |||||| ||||||||
Sbjct: 183 aaggagaaagtgaacaacatggtgctgtttgatcagggtacctatgacaagct 235
Score = 36.2 bits (18), Expect = 0.034
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 357 tcaagccagcagatctacaccagggc 382
||||| |||||||| |||||||||||
Sbjct: 372 tcaagtcagcagatttacaccagggc 397
>gb|CO516472.1|CO516472 s13dSG28C1100084_446272 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 481
Score = 105 bits (53), Expect = 4e-023
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 108 aagccggccaagtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagcta 167
||||| ||||| || || |||||||| || |||||||||||||||||||||||||||| |
Sbjct: 107 aagccagccaaatctggcggtggcaaacagaagaagaagaagtggagcaagggaaagcaa 166
Query: 168 aaggagaaggtaaacaacgcggtgctgttcgaccaggctacctacgacaagct 220
|||||||| || |||||| ||||||||| || |||| |||||| ||||||||
Sbjct: 167 aaggagaaagttaacaacatggtgctgtttgatcagggtacctatgacaagct 219
Score = 36.2 bits (18), Expect = 0.034
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 357 tcaagccagcagatctacaccagggc 382
||||| |||||||| |||||||||||
Sbjct: 356 tcaagtcagcagatttacaccagggc 381
>gb|CO516674.1|CO516674 s13dSG74A0600038_446676 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 488
Score = 105 bits (53), Expect = 4e-023
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 108 aagccggccaagtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagcta 167
||||| ||||| || || |||||||| || |||||||||||||||||||||||||||| |
Sbjct: 115 aagccagccaaatctggcggtggcaaacagaagaagaagaagtggagcaagggaaagcaa 174
Query: 168 aaggagaaggtaaacaacgcggtgctgttcgaccaggctacctacgacaagct 220
|||||||| || |||||| ||||||||| || |||| |||||| ||||||||
Sbjct: 175 aaggagaaagtgaacaacatggtgctgtttgatcagggtacctatgacaagct 227
Score = 36.2 bits (18), Expect = 0.034
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 357 tcaagccagcagatctacaccagggc 382
||||| |||||||| |||||||||||
Sbjct: 364 tcaagtcagcagatttacaccagggc 389
>gb|CO513029.1|CO513029 s13dSG09G0900068_121984 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 97.6 bits (49), Expect = 1e-020
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 108 aagccggccaagtccggtggtggcaagcaaaagaagaagaagtggagcaagggaaagcta 167
||||| ||||| || || |||||||| || |||||||||||||||||||||||||||| |
Sbjct: 102 aagccagccaaatctggcggtggcaaacagaagaagaagaagtggagcaagggaaagcaa 161
Query: 168 aaggagaaggtaaacaacgcggtgctgttcgaccaggctacctacgacaagct 220
|||||||| || || ||| ||||||||| || |||| |||||| ||||||||
Sbjct: 162 aaggagaaagtgaataacatggtgctgtttgatcagggtacctatgacaagct 214
Score = 36.2 bits (18), Expect = 0.034
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 357 tcaagccagcagatctacaccagggc 382
||||| |||||||| |||||||||||
Sbjct: 351 tcaagtcagcagatttacaccagggc 376
>gb|CO512382.1|CO512382 s13dSG80C0600038_114278 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 36.2 bits (18), Expect = 0.034
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 132 aagcaaaagaagaagaag 149
||||||||||||||||||
Sbjct: 53 aagcaaaagaagaagaag 36
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2004
Number of Sequences: 7669
Number of extensions: 2004
Number of successful extensions: 730
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 14
length of query: 754
length of database: 3,745,706
effective HSP length: 16
effective length of query: 738
effective length of database: 3,623,002
effective search space: 2673775476
effective search space used: 2673775476
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)