BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511924.1|CO511924 s13dSG05F0600059_103748 Glandular tr... 34 0.11
gb|CO512212.1|CO512212 s13dSG03C1200086_113938 Glandular tr... 34 0.11
gb|CO517070.1|CO517070 s13dSG29A0800065_468686 Glandular tr... 34 0.11
gb|CO517275.1|CO517275 s13dSG32H1100096_486146 Glandular tr... 32 0.44
gb|AF537205.1| Medicago sativa apoplastic invertase-like mR... 32 0.44
>gb|CO511924.1|CO511924 s13dSG05F0600059_103748 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 583
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 470 tatgtatatgtatgtat 486
|||||||||||||||||
Sbjct: 386 tatgtatatgtatgtat 370
>gb|CO512212.1|CO512212 s13dSG03C1200086_113938 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 613
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 261 ggaggacacaagaaaga 277
|||||||||||||||||
Sbjct: 101 ggaggacacaagaaaga 117
>gb|CO517070.1|CO517070 s13dSG29A0800065_468686 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 484
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 261 ggaggacacaagaaaga 277
|||||||||||||||||
Sbjct: 103 ggaggacacaagaaaga 119
>gb|CO517275.1|CO517275 s13dSG32H1100096_486146 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 628
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 472 tgtatatgtatgtatc 487
||||||||||||||||
Sbjct: 139 tgtatatgtatgtatc 124
>gb|AF537205.1| Medicago sativa apoplastic invertase-like mRNA, partial sequence
Length = 714
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 530 tggtgcaatggccagt 545
||||||||||||||||
Sbjct: 275 tggtgcaatggccagt 290
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 852
Number of Sequences: 7669
Number of extensions: 852
Number of successful extensions: 267
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 6
length of query: 620
length of database: 3,745,706
effective HSP length: 16
effective length of query: 604
effective length of database: 3,623,002
effective search space: 2188293208
effective search space used: 2188293208
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)