BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516263.1|CO516263 s13dSG69D0200014_445854 Glandular tr... 74 1e-013
gb|CO516472.1|CO516472 s13dSG28C1100084_446272 Glandular tr... 74 1e-013
gb|CO516674.1|CO516674 s13dSG74A0600038_446676 Glandular tr... 74 1e-013
gb|CO513029.1|CO513029 s13dSG09G0900068_121984 Glandular tr... 70 2e-012
emb|AJ002486.1|MSAJ2486 Medicago sativa mRNA for protein ph... 38 0.008
>gb|CO516263.1|CO516263 s13dSG69D0200014_445854 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 73.8 bits (37), Expect = 1e-013
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 134 tccaagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaag 193
|||||||| ||||| || || || || || |||||||||||||||||||||||||| |||
Sbjct: 120 tccaagccagccaaatctggcggtggcaaacagaagaagaagaagtggagcaagggaaag 179
Query: 194 cagaaggagaaggtcaacaac 214
|| |||||||| || ||||||
Sbjct: 180 caaaaggagaaagtgaacaac 200
Score = 42.1 bits (21), Expect = 5e-004
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 372 tggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||| |||| |||||| || |||||||| ||||||||||| || |||||
Sbjct: 358 tggtgtctgctcattcaagtcagcagatttacaccagggctacaaacac 406
>gb|CO516472.1|CO516472 s13dSG28C1100084_446272 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 481
Score = 73.8 bits (37), Expect = 1e-013
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 134 tccaagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaag 193
|||||||| ||||| || || || || || |||||||||||||||||||||||||| |||
Sbjct: 104 tccaagccagccaaatctggcggtggcaaacagaagaagaagaagtggagcaagggaaag 163
Query: 194 cagaaggagaaggtcaacaac 214
|| |||||||| || ||||||
Sbjct: 164 caaaaggagaaagttaacaac 184
Score = 42.1 bits (21), Expect = 5e-004
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 372 tggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||| |||| |||||| || |||||||| ||||||||||| || |||||
Sbjct: 342 tggtgtctgctcattcaagtcagcagatttacaccagggctacaaacac 390
>gb|CO516674.1|CO516674 s13dSG74A0600038_446676 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 488
Score = 73.8 bits (37), Expect = 1e-013
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 134 tccaagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaag 193
|||||||| ||||| || || || || || |||||||||||||||||||||||||| |||
Sbjct: 112 tccaagccagccaaatctggcggtggcaaacagaagaagaagaagtggagcaagggaaag 171
Query: 194 cagaaggagaaggtcaacaac 214
|| |||||||| || ||||||
Sbjct: 172 caaaaggagaaagtgaacaac 192
Score = 42.1 bits (21), Expect = 5e-004
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 372 tggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||| |||| |||||| || |||||||| ||||||||||| || |||||
Sbjct: 350 tggtgtctgctcattcaagtcagcagatttacaccagggctacaaacac 398
>gb|CO513029.1|CO513029 s13dSG09G0900068_121984 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 69.9 bits (35), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 134 tccaagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggtaag 193
|||||||| ||||| || || || || || |||||||||||||||||||||||||| |||
Sbjct: 99 tccaagccagccaaatctggcggtggcaaacagaagaagaagaagtggagcaagggaaag 158
Query: 194 cagaaggagaa 204
|| ||||||||
Sbjct: 159 caaaaggagaa 169
Score = 42.1 bits (21), Expect = 5e-004
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 372 tggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||| |||| |||||| || |||||||| ||||||||||| || |||||
Sbjct: 337 tggtgtctgctcattcaagtcagcagatttacaccagggctacaaacac 385
>emb|AJ002486.1|MSAJ2486 Medicago sativa mRNA for protein phosphatase 1, gamma subunit
Length = 1554
Score = 38.2 bits (19), Expect = 0.008
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 160 gaagcagaagaagaagaagtggagcaa 186
|||| ||||||||||||| ||||||||
Sbjct: 196 gaagaagaagaagaagaaatggagcaa 222
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2543
Number of Sequences: 7669
Number of extensions: 2543
Number of successful extensions: 989
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 14
length of query: 713
length of database: 3,745,706
effective HSP length: 16
effective length of query: 697
effective length of database: 3,623,002
effective search space: 2525232394
effective search space used: 2525232394
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)