BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131591.2.2
(1252 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514807.1|CO514807 s13dSG59D1000090_328274 Glandular tr... 38 0.015
gb|CO515319.1|CO515319 s13dSG48E0900071_417697 Glandular tr... 38 0.015
gb|CO516073.1|CO516073 s13dSG64H0100012_445474 Glandular tr... 38 0.015
emb|X58180.1|MSPAL M.sativa PAL mRNA for phenylalanine ammo... 36 0.058
gb|CO513893.1|CO513893 s13dSG73G0900068_156448 Glandular tr... 34 0.23
gb|CO514770.1|CO514770 s13dSG59A0400033_328200 Glandular tr... 34 0.23
>gb|CO514807.1|CO514807 s13dSG59D1000090_328274 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 38.2 bits (19), Expect = 0.015
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 833 agcaagatgctttatgcaagctc 855
||||||||| |||||||||||||
Sbjct: 439 agcaagatgatttatgcaagctc 461
>gb|CO515319.1|CO515319 s13dSG48E0900071_417697 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 644
Score = 38.2 bits (19), Expect = 0.015
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 833 agcaagatgctttatgcaagctc 855
||||||||| |||||||||||||
Sbjct: 394 agcaagatgatttatgcaagctc 416
>gb|CO516073.1|CO516073 s13dSG64H0100012_445474 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 437
Score = 38.2 bits (19), Expect = 0.015
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 833 agcaagatgctttatgcaagctc 855
||||||||| |||||||||||||
Sbjct: 406 agcaagatgatttatgcaagctc 428
>emb|X58180.1|MSPAL M.sativa PAL mRNA for phenylalanine ammonia-lyase
Length = 2409
Score = 36.2 bits (18), Expect = 0.058
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 61 gagttcacgtcctggttgtgctgctc 86
|||||||| || ||||||||||||||
Sbjct: 1598 gagttcacatcttggttgtgctgctc 1573
>gb|CO513893.1|CO513893 s13dSG73G0900068_156448 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 597
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 558 gtgtcgctgtgaacgat 574
|||||||||||||||||
Sbjct: 21 gtgtcgctgtgaacgat 5
>gb|CO514770.1|CO514770 s13dSG59A0400033_328200 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 34.2 bits (17), Expect = 0.23
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 833 agcaagatgctttatgcaagc 853
||||||||| |||||||||||
Sbjct: 442 agcaagatgatttatgcaagc 462
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1941
Number of Sequences: 7669
Number of extensions: 1941
Number of successful extensions: 759
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 6
length of query: 1252
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1236
effective length of database: 3,623,002
effective search space: 4478030472
effective search space used: 4478030472
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)