BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131554.2.6
(761 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ888481.1|AJ888481 AJ888481 Medicago sativa subsp. x va... 68 1e-011
gb|CO513425.1|CO513425 s13dSG38H1200096_130014 Glandular tr... 66 4e-011
gb|CO514535.1|CO514535 s13dSG43H0500046_327730 Glandular tr... 40 0.002
gb|CO513556.1|CO513556 s13dSG12H0400032_139894 Glandular tr... 34 0.14
>gb|AJ888481.1|AJ888481 AJ888481 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 453
Score = 67.9 bits (34), Expect = 1e-011
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 424 acatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacgg 483
|||||||||||||| || ||||| | | |||||||| ||||| || ||||| |||||
Sbjct: 333 acatccatggcggtaacagtcttcctcctagcgtgctcagtgtaagtaacggcatcacga 274
Query: 484 atgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgag 536
|| |||||||||| ||||||||||| |||||||| |||| || ||||||||
Sbjct: 273 atcacgttctccaagaagatcttgagaacaccgcgagtctnttcatagatgag 221
>gb|CO513425.1|CO513425 s13dSG38H1200096_130014 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 488
Score = 65.9 bits (33), Expect = 4e-011
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 424 acatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacgg 483
|||||||||||||| || ||||| | | |||||||| ||||| || ||||| |||||
Sbjct: 327 acatccatggcggtaacagtcttcctcctagcgtgctcagtgtaagtaacggcatcacga 268
Query: 484 atgacgttctccagaaagatcttgagcacaccgcgggtctcctcgtagatgag 536
|| |||||||||| |||||||||| |||||||| ||||| || ||||||||
Sbjct: 267 atcacgttctccaaggagatcttgagaacaccgcgagtctcttcatagatgag 215
>gb|CO514535.1|CO514535 s13dSG43H0500046_327730 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 504
Score = 40.1 bits (20), Expect = 0.002
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 580 atcgccggcttggtgatgccctggatgttgtcgcgcaggacctt 623
||||| ||||| ||||| ||||||||||| ||||| || |||||
Sbjct: 186 atcgcaggcttagtgataccctggatgttatcgcgaagcacctt 143
Score = 36.2 bits (18), Expect = 0.035
Identities = 78/98 (79%)
Strand = Plus / Minus
Query: 418 tagacgacatccatggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcg 477
||||| ||||||||||| || || ||||| | | || ||||| ||||| || || |||
Sbjct: 348 tagacaacatccatggcagtcacagtcttcctccttgcatgctcagtgtatgtaactgcg 289
Query: 478 tcacggatgacgttctccagaaagatcttgagcacacc 515
||||| ||||| ||||||| |||||||| | ||||||
Sbjct: 288 tcacgaatgacattctccaagaagatcttcaacacacc 251
>gb|CO513556.1|CO513556 s13dSG12H0400032_139894 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 34.2 bits (17), Expect = 0.14
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 586 ggcttggtgatgccctggatgttgtcgcgcaggaccttgcg 626
||||| ||||| || || ||||||||||| || ||||||||
Sbjct: 154 ggctttgtgattccttgaatgttgtcgcggagaaccttgcg 114
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1324
Number of Sequences: 7669
Number of extensions: 1324
Number of successful extensions: 414
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 6
length of query: 761
length of database: 3,745,706
effective HSP length: 16
effective length of query: 745
effective length of database: 3,623,002
effective search space: 2699136490
effective search space used: 2699136490
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)