BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.12
(621 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511931.1|CO511931 s13dSG05G0200020_103762 Glandular tr... 66 3e-011
gb|CO514409.1|CO514409 s13dSG36C0400024_327478 Glandular tr... 66 3e-011
gb|CO515008.1|CO515008 s13dSG26C0400034_397521 Glandular tr... 66 3e-011
gb|CO515571.1|CO515571 s13dSG53H0800076_418201 Glandular tr... 34 0.11
gb|CO513553.1|CO513553 s13dSG12H0100012_139888 Glandular tr... 32 0.44
gb|CO514988.1|CO514988 s13dSG63H1100096_397481 Glandular tr... 32 0.44
gb|DQ122847.1| Medicago sativa clone NF6 putative imbibitio... 32 0.44
>gb|CO511931.1|CO511931 s13dSG05G0200020_103762 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 464
Score = 65.9 bits (33), Expect = 3e-011
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||| || |||||||| ||||| || || ||||| || | ||| || |||||||| ||
Sbjct: 45 gatggcgaaatcgaagaatcacaccgctcacaaccagtcttacaaagctcacaagaatgg 104
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
|||||||||||| ||| | || || || || || ||||| |||||||| || |||||| |
Sbjct: 105 catcaagaagccaaagaggcatcgtcacacttcaaccaaagggatggatccaaagttttt 164
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| |||||| ||||||||
Sbjct: 165 gaggaaccagaggtatgcaaggaag 189
>gb|CO514409.1|CO514409 s13dSG36C0400024_327478 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 367
Score = 65.9 bits (33), Expect = 3e-011
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||| || |||||||| ||||| || || ||||| || | ||| || |||||||| ||
Sbjct: 45 gatggcgaaatcgaagaatcacaccgctcacaaccagtcttacaaagctcacaagaatgg 104
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
|||||||||||| ||| | || || || || || ||||| |||||||| || |||||| |
Sbjct: 105 catcaagaagccaaagaggcatcgtcacacttcaaccaaagggatggatccaaagttttt 164
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| |||||| ||||||||
Sbjct: 165 gaggaaccagaggtatgcaaggaag 189
>gb|CO515008.1|CO515008 s13dSG26C0400034_397521 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 367
Score = 65.9 bits (33), Expect = 3e-011
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||| || |||||||| ||||| || || ||||| || | ||| || |||||||| ||
Sbjct: 45 gatggcgaaatcgaagaatcacaccgctcacaaccagtcttacaaagctcacaagaatgg 104
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
|||||||||||| ||| | || || || || || ||||| |||||||| || |||||| |
Sbjct: 105 catcaagaagccaaagaggcatcgtcacacttcaaccaaagggatggatccaaagttttt 164
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| |||||| ||||||||
Sbjct: 165 gaggaaccagaggtatgcaaggaag 189
>gb|CO515571.1|CO515571 s13dSG53H0800076_418201 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 287
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 553 ttgcaagggattagtat 569
|||||||||||||||||
Sbjct: 229 ttgcaagggattagtat 245
>gb|CO513553.1|CO513553 s13dSG12H0100012_139888 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 543
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 ggggagaaaccctaac 20
||||||||||||||||
Sbjct: 261 ggggagaaaccctaac 276
>gb|CO514988.1|CO514988 s13dSG63H1100096_397481 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 485
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 ggggagaaaccctaac 20
||||||||||||||||
Sbjct: 258 ggggagaaaccctaac 273
>gb|DQ122847.1| Medicago sativa clone NF6 putative imbibition protein
homolog/alkaline alpha galactosidase mRNA, partial cds
Length = 627
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 aacggcatcaagaagc 157
||||||||||||||||
Sbjct: 272 aacggcatcaagaagc 287
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1456
Number of Sequences: 7669
Number of extensions: 1456
Number of successful extensions: 447
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 7
length of query: 621
length of database: 3,745,706
effective HSP length: 16
effective length of query: 605
effective length of database: 3,623,002
effective search space: 2191916210
effective search space used: 2191916210
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)