BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.662
(940 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698840.1|AW698840 r515 non-glandular-haired subtracted... 58 1e-008
gb|CO517170.1|CO517170 s13dSG33E0100007_474424 Glandular tr... 52 7e-007
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 44 2e-004
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 44 2e-004
gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted... 44 2e-004
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 44 2e-004
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 42 7e-004
gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA... 42 7e-004
gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA... 42 7e-004
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 42 7e-004
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 42 7e-004
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 42 7e-004
gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted ... 42 7e-004
gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted... 42 7e-004
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 42 7e-004
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 42 7e-004
gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted... 42 7e-004
gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted ... 42 7e-004
gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted... 42 7e-004
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 42 7e-004
gb|CO513810.1|CO513810 s13dSG82H0100012_156282 Glandular tr... 40 0.003
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 38 0.011
gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted... 38 0.011
gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted... 38 0.011
gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted... 38 0.011
gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted ... 38 0.011
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 38 0.011
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 38 0.011
gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted c... 38 0.011
gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x va... 38 0.011
gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted... 36 0.043
gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA... 34 0.17
gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDN... 34 0.17
gb|AW698490.1|AW698490 g454 glandular-haired subtracted cDN... 34 0.17
gb|AW698492.1|AW698492 g456 glandular-haired subtracted cDN... 34 0.17
gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDN... 34 0.17
gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted... 34 0.17
gb|AJ888498.1|AJ888498 AJ888498 Medicago sativa subsp. x va... 34 0.17
gb|DQ122784.1| Medicago sativa clone C43 putative splicing ... 34 0.17
>gb|AW698840.1|AW698840 r515 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 397
Score = 58.0 bits (29), Expect = 1e-008
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 521 tccaagcctttcacatcagcgttactctcagcattcttcagcaaatcca 569
||||| ||||| || ||||| |||||||| |||||||||||||||||||
Sbjct: 168 tccaaacctttgacttcagcattactctctgcattcttcagcaaatcca 120
>gb|CO517170.1|CO517170 s13dSG33E0100007_474424 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 52.0 bits (26), Expect = 7e-007
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 398 atcagctcaatgtggcaaggggaggacatgtaagggttaatgcgtccgtgagcacggtag 457
|||| ||||||||||||||| | |||||||||||||| || | ||| || || | |||
Sbjct: 404 atcaactcaatgtggcaaggaaatgacatgtaagggtttattcttccatgggctctgtat 463
Query: 458 gtgcggcgcctctgcttctgggcttggttcacctggatgtgtgaaacata 507
|| | ||| || |||||||| ||||| || || ||||| |||||||||||
Sbjct: 464 gttctgcgtctttgcttctgtgcttgattgacttggatatgtgaaacata 513
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 918 cgtacctgcccgggcggccgct 939
||||||||||||||||||||||
Sbjct: 250 cgtacctgcccgggcggccgct 271
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 918 cgtacctgcccgggcggccgct 939
||||||||||||||||||||||
Sbjct: 25 cgtacctgcccgggcggccgct 4
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 354
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgcta 940
||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgcta 3
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 918 cgtacctgcccgggcggccgct 939
||||||||||||||||||||||
Sbjct: 25 cgtacctgcccgggcggccgct 4
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 264
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgct 261
>gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 407
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 112 gtacctgcccgggcggccgct 92
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 291 gtacctgcccgggcggccgct 311
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgct 3
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 168
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 527
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 370 gtacctgcccgggcggccgct 390
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgct 3
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 326
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgct 3
>gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 434
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgct 3
>gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 129
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 42.1 bits (21), Expect = 7e-004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||||||||
Sbjct: 189 gtacctgcccgggcggccgct 209
>gb|CO513810.1|CO513810 s13dSG82H0100012_156282 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 269
Score = 40.1 bits (20), Expect = 0.003
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 743 gcaaaagctgtctcccttgtgttcttgaagtggaccctcaggtc 786
||||| ||||| ||||| ||||||||||| || ||||| |||||
Sbjct: 165 gcaaacgctgtttccctggtgttcttgaaatgaaccctaaggtc 122
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 21 acctgcccgggcggccgct 3
>gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 252
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 231 acctgcccgggcggccgct 249
>gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgct 4
>gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 275
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgct 4
>gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 343
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 322 acctgcccgggcggccgct 340
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 363 acctgcccgggcggccgct 381
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 309 acctgcccgggcggccgct 327
>gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 370
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 349 acctgcccgggcggccgct 367
>gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 561
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 921 acctgcccgggcggccgct 939
|||||||||||||||||||
Sbjct: 538 acctgcccgggcggccgct 556
>gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 340
Score = 36.2 bits (18), Expect = 0.043
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 922 cctgcccgggcggccgct 939
||||||||||||||||||
Sbjct: 312 cctgcccgggcggccgct 329
>gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 307
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||| ||||||
Sbjct: 261 gtacctgcccgggctgccgct 281
>gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 923 ctgcccgggcggccgct 939
|||||||||||||||||
Sbjct: 289 ctgcccgggcggccgct 305
>gb|AW698490.1|AW698490 g454 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 115
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
||||||| |||||||||||||
Sbjct: 24 gtacctggccgggcggccgct 4
>gb|AW698492.1|AW698492 g456 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 110
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
||||||| |||||||||||||
Sbjct: 24 gtacctggccgggcggccgct 4
>gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 223
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 919 gtacctgcccgggcggccgct 939
||||||| |||||||||||||
Sbjct: 24 gtacctgtccgggcggccgct 4
>gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 290
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||| ||||
Sbjct: 268 gtacctgcccgggcgggcgct 288
>gb|AJ888498.1|AJ888498 AJ888498 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 530
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
|||||||||||||||| ||||
Sbjct: 507 gtacctgcccgggcgggcgct 527
>gb|DQ122784.1| Medicago sativa clone C43 putative splicing factor Prp8 mRNA,
partial cds
Length = 552
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 919 gtacctgcccgggcggccgct 939
||||||| |||||||||||||
Sbjct: 479 gtacctggccgggcggccgct 499
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1591
Number of Sequences: 7669
Number of extensions: 1591
Number of successful extensions: 458
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 45
length of query: 940
length of database: 3,745,706
effective HSP length: 16
effective length of query: 924
effective length of database: 3,623,002
effective search space: 3347653848
effective search space used: 3347653848
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)