BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.623
(863 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511814.1|CO511814 s13dSG02C1200098_103528 Glandular tr... 34 0.16
gb|CO511815.1|CO511815 s13dSG02D0100014_103530 Glandular tr... 34 0.16
gb|CO512504.1|CO512504 s13dSG100H010001_114522 Glandular tr... 34 0.16
gb|CO512738.1|CO512738 s13dSG88A1000069_121402 Glandular tr... 34 0.16
gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular tr... 34 0.16
gb|CO512868.1|CO512868 s13dSG20F1000079_121662 Glandular tr... 34 0.16
gb|CO513082.1|CO513082 s13dSG89E0900067_122090 Glandular tr... 34 0.16
gb|CO513725.1|CO513725 s13dSG15D0600046_140232 Glandular tr... 34 0.16
gb|CO514525.1|CO514525 s13dSG43G0500038_327710 Glandular tr... 34 0.16
gb|CO516092.1|CO516092 s13dSG65B0800073_445512 Glandular tr... 34 0.16
gb|CO517143.1|CO517143 s13dSG33A0900069_474370 Glandular tr... 34 0.16
gb|CO517159.1|CO517159 s13dSG33C0900070_474402 Glandular tr... 34 0.16
>gb|CO511814.1|CO511814 s13dSG02C1200098_103528 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 578
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 463 ggcggctacggcggtgg 479
|||||||||||||||||
Sbjct: 542 ggcggctacggcggtgg 558
>gb|CO511815.1|CO511815 s13dSG02D0100014_103530 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 494
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 459 tggaggcggctacggcggtgg 479
||||||||||||||| |||||
Sbjct: 21 tggaggcggctacggtggtgg 41
>gb|CO512504.1|CO512504 s13dSG100H010001_114522 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 459 tggaggcggctacggcggtgg 479
||||||||||||||| |||||
Sbjct: 48 tggaggcggctacggtggtgg 68
>gb|CO512738.1|CO512738 s13dSG88A1000069_121402 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 463 ggcggctacggcggtgg 479
|||||||||||||||||
Sbjct: 390 ggcggctacggcggtgg 406
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 481 ggtggaggctacggcggtggt 501
||||| |||||||||||||||
Sbjct: 387 ggtggcggctacggcggtggt 407
>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 398
Score = 34.2 bits (17), Expect = 0.16
Identities = 38/45 (84%)
Strand = Plus / Plus
Query: 166 gttgagtaccgttgcttcgttggcggcctcgcctgggccaccgac 210
||||| ||||| |||||||| || || || || ||||||||||||
Sbjct: 89 gttgaataccgatgcttcgtcggaggtcttgcatgggccaccgac 133
>gb|CO512868.1|CO512868 s13dSG20F1000079_121662 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 416
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 459 tggaggcggctacggcggtgg 479
||||||||||||||| |||||
Sbjct: 293 tggaggcggctacggtggtgg 313
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 463 ggcggctacggcggtgg 479
|||||||||||||||||
Sbjct: 99 ggcggctacggcggtgg 115
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 481 ggtggaggctacggcggtggt 501
||||| |||||||||||||||
Sbjct: 96 ggtggcggctacggcggtggt 116
>gb|CO513082.1|CO513082 s13dSG89E0900067_122090 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 584
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 463 ggcggctacggcggtgg 479
|||||||||||||||||
Sbjct: 390 ggcggctacggcggtgg 406
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 481 ggtggaggctacggcggtggt 501
||||| |||||||||||||||
Sbjct: 387 ggtggcggctacggcggtggt 407
>gb|CO513725.1|CO513725 s13dSG15D0600046_140232 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 260
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 459 tggaggcggctacggcggtgg 479
||||||||||||||| |||||
Sbjct: 60 tggaggcggctacggtggtgg 80
>gb|CO514525.1|CO514525 s13dSG43G0500038_327710 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 468
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 459 tggaggcggctacggcggtgg 479
||||||||||||||| |||||
Sbjct: 177 tggaggcggctacggtggtgg 197
>gb|CO516092.1|CO516092 s13dSG65B0800073_445512 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 408
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 459 tggaggcggctacggcggtgg 479
||||||||||||||| |||||
Sbjct: 315 tggaggcggctacggtggtgg 335
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 463 ggcggctacggcggtgg 479
|||||||||||||||||
Sbjct: 70 ggcggctacggcggtgg 86
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 481 ggtggaggctacggcggtggt 501
||||| |||||||||||||||
Sbjct: 67 ggtggcggctacggcggtggt 87
>gb|CO517143.1|CO517143 s13dSG33A0900069_474370 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 479
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 459 tggaggcggctacggcggtgg 479
||||||||||||||| |||||
Sbjct: 364 tggaggcggctacggtggtgg 344
>gb|CO517159.1|CO517159 s13dSG33C0900070_474402 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 479
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 459 tggaggcggctacggcggtgg 479
||||||||||||||| |||||
Sbjct: 364 tggaggcggctacggtggtgg 344
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1248
Number of Sequences: 7669
Number of extensions: 1248
Number of successful extensions: 490
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 45
length of query: 863
length of database: 3,745,706
effective HSP length: 16
effective length of query: 847
effective length of database: 3,623,002
effective search space: 3068682694
effective search space used: 3068682694
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)