BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.467
(758 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|X13675.1|MSHIS3C2 Medicago sativa mRNA for histone H3 c... 283 9e-077
emb|X13674.1|MSHIS3C1 Medicago sativa mRNA for histone H3 c... 278 5e-075
emb|X13673.1|MSHIS311 Medicago sativa H3 histone gene ALH3-1.1 270 1e-072
gb|M35867.1|ALFHISH3A Alfalfa histone H3 (H3-1.1) gene, com... 262 3e-070
emb|X13677.1|MSHIS3C4 Medicago sativa mRNA for histone H3 C... 135 5e-032
gb|U09460.1|MSU09460 Medicago sativa clone pH3c110 histone ... 96 4e-020
gb|U09461.1|MSU09461 Medicago sativa clone pH3c118 histone ... 96 4e-020
gb|U09462.1|MSU09462 Medicago sativa clone pH3c126 histone ... 96 4e-020
gb|U09464.1|MSU09464 Medicago sativa clone pH3c130 histone ... 96 4e-020
gb|U09463.1|MSU09463 Medicago sativa Regen S clone pH3c127 ... 88 1e-017
gb|U09465.1|MSU09465 Medicago sativa clone pH3c131 histone ... 88 1e-017
gb|CO516695.1|CO516695 s13dSG74C0500035_446718 Glandular tr... 82 7e-016
gb|CO516855.1|CO516855 s13dSG98E1100085_447038 Glandular tr... 80 3e-015
gb|CO516992.1|CO516992 s13dSG81F0300027_468530 Glandular tr... 80 3e-015
gb|U09459.1|MSU09459 Medicago sativa cultivar Chief histone... 78 1e-014
gb|CO514105.1|CO514105 s13dSG75D0200014_156872 Glandular tr... 74 2e-013
gb|CO516875.1|CO516875 s13dSG98H1100094_447078 Glandular tr... 74 2e-013
emb|X13676.1|MSHIS3C3 Medicago sativa mRNA for histone H3 c... 74 2e-013
gb|CO513649.1|CO513649 s13dSG17C0300018_140080 Glandular tr... 66 4e-011
gb|CO515400.1|CO515400 s13dSG49H1000092_417859 Glandular tr... 58 9e-009
gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA... 56 4e-008
gb|CO517274.1|CO517274 s13dSG32H0900080_486144 Glandular tr... 56 4e-008
gb|U09458.1|MSU09458 Medicago sativa cultivar Chief histone... 54 1e-007
gb|CO516848.1|CO516848 s13dSG98E0300019_447024 Glandular tr... 50 2e-006
gb|AW698444.1|AW698444 g394 glandular-haired subtracted cDN... 46 4e-005
>emb|X13675.1|MSHIS3C2 Medicago sativa mRNA for histone H3 clone pH3c-3
Length = 513
Score = 283 bits (143), Expect = 9e-077
Identities = 305/359 (84%)
Strand = Plus / Plus
Query: 128 ggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgccccggcgacc 187
||||| || ||||||||||| || ||||| || || || ||||| ||||| ||||| |||
Sbjct: 1 ggcaaagctccaaggaagcaactcgccacaaaagccgctcgcaaatctgctccggccacc 60
Query: 188 ggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgggagatccgc 247
|||||||||||||| || ||||||||| | || || |||||||| ||||| |||||||||
Sbjct: 61 ggcggagtgaagaaacctcaccgtttcaggcctggaaccgtcgctctccgtgagatccgc 120
Query: 248 aagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgcctggtgcgt 307
||||||||||||||||| ||||| || |||||||| || || |||||||| || || |||
Sbjct: 121 aagtaccagaagagcactgagctcctcatccgcaaactccccttccagcgtcttgtccgt 180
Query: 308 gagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtcgccgcgctg 367
|||||||| ||||| |||||||| || ||||| ||||||||||||||||| | || |||
Sbjct: 181 gagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcactg 240
Query: 368 caggaggcgtccgaggcctacctcgtcgggctcttcgaggacaccaacctctgcgccatt 427
|| || ||| ||||||| || |||||||| ||||| ||||| || |||||||||||||||
Sbjct: 241 caagaagcggccgaggcttatctcgtcggtctctttgaggatactaacctctgcgccatt 300
Query: 428 cacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgtatccgtgg 486
|| |||||||| ||||| |||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 301 catgccaagcgtgtcactatcatgcctaaggatatccagctcgctaggcgtatccgtgg 359
>emb|X13674.1|MSHIS3C1 Medicago sativa mRNA for histone H3 clone pH3c-1
Length = 618
Score = 278 bits (140), Expect = 5e-075
Identities = 311/368 (84%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgcc 178
||||| || ||||| || ||||||||||| || ||||| || || || ||||| |||||
Sbjct: 94 tccaccggtggcaaagctccaaggaagcaactcgccacaaaagccgctcgcaaatctgct 153
Query: 179 ccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgg 238
||||| ||||||||||||||||| || ||||||||| | || || |||||||| |||||
Sbjct: 154 ccggccaccggcggagtgaagaaacctcaccgtttcaggccaggaaccgtcgctctccgt 213
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||||||||||||||||||||| ||||| || |||||||| || || ||||||||
Sbjct: 214 gagatccgcaagtaccagaagagcactgagctcctcatccgcaaactccccttccagcgt 273
Query: 299 ctggtgcgtgagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtc 358
|| || ||||||||||| ||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 274 cttgtccgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtg 333
Query: 359 gccgcgctgcaggaggcgtccgaggcctacctcgtcgggctcttcgaggacaccaacctc 418
| || ||||| || ||| ||||||| || |||||||| ||||| ||||| || || |||
Sbjct: 334 tcggcactgcaagaagcggccgaggcttatctcgtcggtctctttgaggatactaatctc 393
Query: 419 tgcgccattcacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgt 478
||||||||||| || ||||| ||||| |||||||||||||| ||||||||||| | |||
Sbjct: 394 tgcgccattcatgctaagcgtgtcactatcatgcccaaggatatccagctcgctaggcgt 453
Query: 479 atccgtgg 486
||||||||
Sbjct: 454 atccgtgg 461
>emb|X13673.1|MSHIS311 Medicago sativa H3 histone gene ALH3-1.1
Length = 1089
Score = 270 bits (136), Expect = 1e-072
Identities = 310/368 (84%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgcc 178
||||| || ||||| || ||||||||||| || ||||| || || || ||||| |||||
Sbjct: 315 tccaccggtggcaaagctccaaggaagcaactcgccacaaaagccgctcgcaaatctgct 374
Query: 179 ccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgg 238
||||| ||||||||||||||||| || ||||||||| | || || |||||||| |||||
Sbjct: 375 ccggccaccggcggagtgaagaaacctcaccgtttcaggccaggaaccgtcgctctccgt 434
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||||||||||||||||||||| ||||| || |||||||| || || ||||||||
Sbjct: 435 gagatccgcaagtaccagaagagcactgagctcctcatccgcaaactccccttccagcgt 494
Query: 299 ctggtgcgtgagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtc 358
|| || ||||||||||| ||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 495 cttgtccgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtg 554
Query: 359 gccgcgctgcaggaggcgtccgaggcctacctcgtcgggctcttcgaggacaccaacctc 418
| || |||| || ||| ||||||| || |||||||| ||||| ||||| || ||||||
Sbjct: 555 tcggctttgcaagaagcggccgaggcttatctcgtcggtctctttgaggatactaacctc 614
Query: 419 tgcgccattcacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgt 478
||||||||||| || ||||| ||||| |||||||| ||||| ||||||||||| | |||
Sbjct: 615 tgcgccattcatgctaagcgtgtcactatcatgcctaaggatatccagctcgctaggcgt 674
Query: 479 atccgtgg 486
||||||||
Sbjct: 675 atccgtgg 682
>gb|M35867.1|ALFHISH3A Alfalfa histone H3 (H3-1.1) gene, complete cds
Length = 1089
Score = 262 bits (132), Expect = 3e-070
Identities = 309/368 (83%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgcc 178
||||| || ||||| || ||||||||||| || ||||| || || || ||||| |||||
Sbjct: 315 tccaccggtggcaaagctccaaggaagcaactcgccacaaaagccgctcgcaaatctgct 374
Query: 179 ccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgg 238
||||| ||||||||||||||||| || ||||||||| | || || |||||||| |||||
Sbjct: 375 ccggccaccggcggagtgaagaaacctcaccgtttcaggccaggaaccgtcgctctccgt 434
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||||||||||||||||||||| ||||| || |||||||| || || ||||||||
Sbjct: 435 gagatccgcaagtaccagaagagcactgagctcctcatccgcaaactccccttccagcgt 494
Query: 299 ctggtgcgtgagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtc 358
|| || ||||||||||| ||||| |||||||| || ||||| ||||||||||||| |||
Sbjct: 495 cttgtccgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgtcgtg 554
Query: 359 gccgcgctgcaggaggcgtccgaggcctacctcgtcgggctcttcgaggacaccaacctc 418
| || |||| || ||| ||||||| || |||||||| ||||| ||||| || ||||||
Sbjct: 555 tcggctttgcaagaagcggccgaggcttatctcgtcggtctctttgaggatactaacctc 614
Query: 419 tgcgccattcacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgt 478
||||||||||| || ||||| ||||| |||||||| ||||| ||||||||||| | |||
Sbjct: 615 tgcgccattcatgctaagcgtgtcactatcatgcctaaggatatccagctcgctaggcgt 674
Query: 479 atccgtgg 486
||||||||
Sbjct: 675 atccgtgg 682
>emb|X13677.1|MSHIS3C4 Medicago sativa mRNA for histone H3 C-terminal clone pH3c-12
Length = 322
Score = 135 bits (68), Expect = 5e-032
Identities = 140/164 (85%)
Strand = Plus / Plus
Query: 323 ttcaagaccgacctccgcttccagagctccgccgtcgccgcgctgcaggaggcgtccgag 382
|||||||| || ||||| ||||||||||||||||| | || ||||| || ||| |||||
Sbjct: 1 ttcaagactgatctccgtttccagagctccgccgtgtcggcactgcaagaagcggccgag 60
Query: 383 gcctacctcgtcgggctcttcgaggacaccaacctctgcgccattcacgccaagcgcgtc 442
|| || |||||||| ||||| ||||| || ||||||||||||||||| |||||||| |||
Sbjct: 61 gcttatctcgtcggtctctttgaggatactaacctctgcgccattcatgccaagcgtgtc 120
Query: 443 accatcatgcccaaggacatccagctcgcccgccgtatccgtgg 486
|| |||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 121 actatcatgcctaaggatatccagctcgctaggcgtatccgtgg 164
>gb|U09460.1|MSU09460 Medicago sativa clone pH3c110 histone H3.2 mRNA, complete cds
Length = 693
Score = 95.6 bits (48), Expect = 4e-020
Identities = 171/212 (80%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgcc 178
|||||||| || ||||| |||||||||||||| ||||||||||| || | || |||||
Sbjct: 86 tccactggtggtaaggctccaaggaagcagctcgccaccaaggctgctaggaaatctgct 145
Query: 179 ccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgg 238
|| | || || ||||| ||||| || ||||| | |||||| || |||||||| || ||
Sbjct: 146 cctactactggaggagtcaagaaacctcaccgataccgccctggaaccgtcgctcttcgt 205
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||| |||||||||||||| || ||||| ||||||||||||| || || |||||
Sbjct: 206 gagatccgtaagtaccagaagagtaccgagcttttgatccgcaagcttccatttcagcgt 265
Query: 299 ctggtgcgtgagatcgcccaggacttcaagac 330
|| || ||||| || || || || ||||||||
Sbjct: 266 cttgtccgtgaaattgctcaagatttcaagac 297
>gb|U09461.1|MSU09461 Medicago sativa clone pH3c118 histone H3.2 mRNA, complete cds
Length = 679
Score = 95.6 bits (48), Expect = 4e-020
Identities = 171/212 (80%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgcc 178
|||||||| || ||||| |||||||||||||| ||||||||||| || | || |||||
Sbjct: 72 tccactggtggtaaggctccaaggaagcagctcgccaccaaggctgctaggaaatctgct 131
Query: 179 ccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgg 238
|| | || || ||||| ||||| || ||||| | |||||| || |||||||| || ||
Sbjct: 132 cctactactggaggagtcaagaaacctcaccgataccgccctggaaccgtcgctcttcgt 191
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||| |||||||||||||| || ||||| ||||||||||||| || || |||||
Sbjct: 192 gagatccgtaagtaccagaagagtaccgagcttttgatccgcaagcttccatttcagcgt 251
Query: 299 ctggtgcgtgagatcgcccaggacttcaagac 330
|| || ||||| || || || || ||||||||
Sbjct: 252 cttgtccgtgaaattgctcaagatttcaagac 283
>gb|U09462.1|MSU09462 Medicago sativa clone pH3c126 histone H3.2 mRNA, partial cds
Length = 571
Score = 95.6 bits (48), Expect = 4e-020
Identities = 171/212 (80%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgcc 178
|||||||| || ||||| |||||||||||||| ||||||||||| || | || |||||
Sbjct: 4 tccactggtggtaaggctccaaggaagcagctcgccaccaaggctgctaggaaatctgct 63
Query: 179 ccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgg 238
|| | || || ||||| ||||| || ||||| | |||||| || |||||||| || ||
Sbjct: 64 cctactactggaggagtcaagaaacctcaccgataccgccctggaaccgtcgctcttcgt 123
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||| |||||||||||||| || ||||| ||||||||||||| || || |||||
Sbjct: 124 gagatccgtaagtaccagaagagtaccgagcttttgatccgcaagcttccatttcagcgt 183
Query: 299 ctggtgcgtgagatcgcccaggacttcaagac 330
|| || ||||| || || || || ||||||||
Sbjct: 184 cttgtccgtgaaattgctcaagatttcaagac 215
>gb|U09464.1|MSU09464 Medicago sativa clone pH3c130 histone H3.2 mRNA, complete cds
Length = 660
Score = 95.6 bits (48), Expect = 4e-020
Identities = 171/212 (80%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgcc 178
|||||||| || ||||| |||||||||||||| ||||||||||| || | || |||||
Sbjct: 48 tccactggtggtaaggctccaaggaagcagctcgccaccaaggctgctaggaaatctgct 107
Query: 179 ccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgg 238
|| | || || ||||| ||||| || ||||| | |||||| || |||||||| || ||
Sbjct: 108 cctactactggaggagtcaagaaacctcaccgataccgccctggaaccgtcgctcttcgt 167
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||| |||||||||||||| || ||||| ||||||||||||| || || |||||
Sbjct: 168 gagatccgtaagtaccagaagagtaccgagcttttgatccgcaagcttccatttcagcgt 227
Query: 299 ctggtgcgtgagatcgcccaggacttcaagac 330
|| || ||||| || || || || ||||||||
Sbjct: 228 cttgtccgtgaaattgctcaagatttcaagac 259
>gb|U09463.1|MSU09463 Medicago sativa Regen S clone pH3c127 histone H3.2 mRNA, partial
cds
Length = 595
Score = 87.7 bits (44), Expect = 1e-017
Identities = 161/200 (80%)
Strand = Plus / Plus
Query: 131 aaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgccccggcgaccggc 190
||||| |||||||||||||| ||||||||||| || | || ||||| || | || ||
Sbjct: 7 aaggctccaaggaagcagctcgccaccaaggctgctaggaaatctgctcctactactgga 66
Query: 191 ggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgggagatccgcaag 250
||||| ||||| || ||||| | |||||| || || ||||| || || |||||||| |||
Sbjct: 67 ggagtcaagaaacctcaccgataccgccctggaactgtcgctcttcgtgagatccgtaag 126
Query: 251 taccagaagagcacggagctgctgatccgcaagctgccgttccagcgcctggtgcgtgag 310
||||||||||| || ||||| ||||||||||||| || || ||||| || || |||||
Sbjct: 127 taccagaagagtaccgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaa 186
Query: 311 atcgcccaggacttcaagac 330
||||| || || ||||||||
Sbjct: 187 atcgctcaagatttcaagac 206
>gb|U09465.1|MSU09465 Medicago sativa clone pH3c131 histone H3.2 mRNA, complete cds
Length = 617
Score = 87.7 bits (44), Expect = 1e-017
Identities = 161/200 (80%)
Strand = Plus / Plus
Query: 131 aaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgccccggcgaccggc 190
||||| |||||||||||||| ||||||||||| || | || ||||| || | || ||
Sbjct: 60 aaggctccaaggaagcagctcgccaccaaggctgctaggaaatctgctcctactactgga 119
Query: 191 ggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgggagatccgcaag 250
||||| ||||| || ||||| | |||||| || || ||||| || || |||||||| |||
Sbjct: 120 ggagtcaagaaacctcaccgataccgccctggaactgtcgctcttcgtgagatccgtaag 179
Query: 251 taccagaagagcacggagctgctgatccgcaagctgccgttccagcgcctggtgcgtgag 310
||||||||||| || ||||| ||||||||||||| || || ||||| || || |||||
Sbjct: 180 taccagaagagtaccgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaa 239
Query: 311 atcgcccaggacttcaagac 330
||||| || || ||||||||
Sbjct: 240 atcgctcaagatttcaagac 259
>gb|CO516695.1|CO516695 s13dSG74C0500035_446718 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 434
Score = 81.8 bits (41), Expect = 7e-016
Identities = 167/209 (79%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgcc 178
||||| |||||||| || ||||||||||| || |||||||| || || | || |||||
Sbjct: 122 tccaccggcggcaaagcaccaaggaagcaactcgccaccaaagctgcaaggaaatctgct 181
Query: 179 ccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgg 238
|| | |||||||||||||||||||| || |||| || || || ||||| || || ||
Sbjct: 182 ccaaccaccggcggagtgaagaagccacatcgttatcgtcctggaaccgttgctcttcgt 241
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||| ||||| |||||||| || ||||| ||||||| ||||| || ||||||||
Sbjct: 242 gagatccgtaagtatcagaagagtaccgagcttttgatccgtaagcttccattccagcgt 301
Query: 299 ctggtgcgtgagatcgcccaggacttcaa 327
|| || ||||| || || ||||| |||||
Sbjct: 302 cttgttcgtgaaattgctcaggatttcaa 330
>gb|CO516855.1|CO516855 s13dSG98E1100085_447038 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 469
Score = 79.8 bits (40), Expect = 3e-015
Identities = 160/200 (80%)
Strand = Plus / Plus
Query: 131 aaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgccccggcgaccggc 190
||||| |||||||||||||| ||||||||||| || | || ||||| || | || ||
Sbjct: 115 aaggctccaaggaagcagctcgccaccaaggctgctaggaaatctgctcctactactgga 174
Query: 191 ggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgggagatccgcaag 250
||||| ||||| || ||||| | |||||| || || ||||| || || |||||||| |||
Sbjct: 175 ggagtcaagaaacctcaccgataccgccctggaactgtcgctcttcgtgagatccgtaag 234
Query: 251 taccagaagagcacggagctgctgatccgcaagctgccgttccagcgcctggtgcgtgag 310
||||||||||| || ||||| ||||||||||||| || || ||||| || || |||||
Sbjct: 235 taccagaagagtaccgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaa 294
Query: 311 atcgcccaggacttcaagac 330
|| || || || ||||||||
Sbjct: 295 attgctcaagatttcaagac 314
>gb|CO516992.1|CO516992 s13dSG81F0300027_468530 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 496
Score = 79.8 bits (40), Expect = 3e-015
Identities = 160/200 (80%)
Strand = Plus / Plus
Query: 131 aaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtctgccccggcgaccggc 190
||||| |||||||||||||| ||||||||||| || | || ||||| || | || ||
Sbjct: 132 aaggctccaaggaagcagctcgccaccaaggctgctaggaaatctgctcctactactgga 191
Query: 191 ggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctccgggagatccgcaag 250
||||| ||||| || ||||| | |||||| || || ||||| || || |||||||| |||
Sbjct: 192 ggagtcaagaaacctcaccgataccgccctggaactgtcgctcttcgtgagatccgtaag 251
Query: 251 taccagaagagcacggagctgctgatccgcaagctgccgttccagcgcctggtgcgtgag 310
||||||||||| || ||||| ||||||||||||| || || ||||| || || |||||
Sbjct: 252 taccagaagagtaccgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaa 311
Query: 311 atcgcccaggacttcaagac 330
|| || || || ||||||||
Sbjct: 312 attgctcaagatttcaagac 331
>gb|U09459.1|MSU09459 Medicago sativa cultivar Chief histone H3.1 gene, 5' region and
complete cds
Length = 922
Score = 77.8 bits (39), Expect = 1e-014
Identities = 171/215 (79%)
Strand = Plus / Plus
Query: 116 aagtccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtct 175
|||||||| ||||||||||| || |||||||||| ||||| ||||| || || || ||
Sbjct: 322 aagtccaccggcggcaaggctccccggaagcagctcgccacaaaggccgctcgaaaatca 381
Query: 176 gccccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctc 235
|| ||||||||||| |||||||||||||| ||| | ||| | || || || || || |
Sbjct: 382 gctccggcgaccggaggagtgaagaagccacacagattcagacctggaacagttgctttg 441
Query: 236 cgggagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccag 295
| |||||||| ||||| ||||||||||| ||||| || ||||| || || || |||||
Sbjct: 442 agagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaa 501
Query: 296 cgcctggtgcgtgagatcgcccaggacttcaagac 330
|| || || ||||| ||||| || || ||||||||
Sbjct: 502 cgtcttgttcgtgaaatcgctcaagatttcaagac 536
>gb|CO514105.1|CO514105 s13dSG75D0200014_156872 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 599
Score = 73.8 bits (37), Expect = 2e-013
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 116 aagtccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtct 175
|||||||| ||||||||||| || |||||||||| ||||| ||||| || || || ||
Sbjct: 101 aagtccaccggcggcaaggctccccggaagcagctcgccacaaaggccgctcggaaatca 160
Query: 176 gccccggcgaccggcggagtgaagaagcc 204
|| ||||||||||| ||||||||||||||
Sbjct: 161 gctccggcgaccggaggagtgaagaagcc 189
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 446 atcatgcccaaggacat 462
|||||||||||||||||
Sbjct: 431 atcatgcccaaggacat 447
>gb|CO516875.1|CO516875 s13dSG98H1100094_447078 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 73.8 bits (37), Expect = 2e-013
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 116 aagtccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtct 175
|||||||| ||||||||||| || |||||||||| ||||| ||||| || || || ||
Sbjct: 96 aagtccaccggcggcaaggctccccggaagcagctcgccacaaaggccgctcggaaatca 155
Query: 176 gccccggcgaccggcggagtgaagaagcc 204
|| ||||||||||| ||||||||||||||
Sbjct: 156 gctccggcgaccggaggagtgaagaagcc 184
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 446 atcatgcccaaggacat 462
|||||||||||||||||
Sbjct: 426 atcatgcccaaggacat 442
>emb|X13676.1|MSHIS3C3 Medicago sativa mRNA for histone H3 clone pH3c-11
Length = 579
Score = 73.8 bits (37), Expect = 2e-013
Identities = 154/193 (79%)
Strand = Plus / Plus
Query: 138 caaggaagcagctggccaccaaggcggcgcgcaagtctgccccggcgaccggcggagtga 197
||||||||||||| ||||||||||| || | || ||||| || | || || ||||| |
Sbjct: 1 caaggaagcagctcgccaccaaggctgctaggaaatctgctcctactactggaggagtca 60
Query: 198 agaagccccaccgtttccgccccggcaccgtcgcgctccgggagatccgcaagtaccaga 257
|||| || ||||| | |||||| || || ||||| || || |||||||| ||||||||||
Sbjct: 61 agaaacctcaccgataccgccctggaactgtcgctcttcgtgagatccgtaagtaccaga 120
Query: 258 agagcacggagctgctgatccgcaagctgccgttccagcgcctggtgcgtgagatcgccc 317
|||| || ||||| ||||||||||||| || || ||||| || || ||||| || || |
Sbjct: 121 agagtaccgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctc 180
Query: 318 aggacttcaagac 330
| || ||||||||
Sbjct: 181 aagatttcaagac 193
Score = 34.2 bits (17), Expect = 0.14
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 404 gaggacaccaacctctgcgccattcacgccaagcgcgtcaccatcatgcccaaggacatc 463
||||||||||| || || || ||||| |||||| | || || || ||||| ||||||||
Sbjct: 267 gaggacaccaatctgtgtgcaattcatgccaagagggtgacaattatgcctaaggacatt 326
Query: 464 cagct 468
|||||
Sbjct: 327 cagct 331
>gb|CO513649.1|CO513649 s13dSG17C0300018_140080 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 368
Score = 65.9 bits (33), Expect = 4e-011
Identities = 183/233 (78%)
Strand = Plus / Plus
Query: 116 aagtccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtct 175
||||| ||||| || ||||| || |||||||| || || |||||||| || || ||||||
Sbjct: 95 aagtctactggtggaaaggcacctaggaagcaacttgcaaccaaggctgcacgtaagtct 154
Query: 176 gccccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctc 235
|| || | || || ||||| ||||| || || |||| ||||||||| || || || ||
Sbjct: 155 gctcccactactggtggagttaagaaaccacatcgttaccgccccggaactgttgctctt 214
Query: 236 cgggagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccag 295
|| ||||| | ||||| |||||||| || ||||| ||||| | ||||| || ||||||
Sbjct: 215 cgtgagattaggaagtatcagaagagtactgagctcttgatcaggaagctccccttccag 274
Query: 296 cgcctggtgcgtgagatcgcccaggacttcaagaccgacctccgcttccagag 348
| |||| ||||| || || |||||||||||||| ||||| || ||||||||
Sbjct: 275 aggttggttcgtgaaattgctcaggacttcaagactgaccttcgtttccagag 327
>gb|CO515400.1|CO515400 s13dSG49H1000092_417859 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 591
Score = 58.0 bits (29), Expect = 9e-009
Identities = 182/233 (78%)
Strand = Plus / Plus
Query: 116 aagtccactggcggcaaggcgccaaggaagcagctggccaccaaggcggcgcgcaagtct 175
||||| ||||| || ||||| || |||||||| || || |||||||| || || ||||||
Sbjct: 97 aagtctactggtggaaaggcacctaggaagcaacttgcaaccaaggctgcacgtaagtct 156
Query: 176 gccccggcgaccggcggagtgaagaagccccaccgtttccgccccggcaccgtcgcgctc 235
|| || | || || ||||| ||||| || || |||| ||||||||| || || || ||
Sbjct: 157 gcacccactactggtggagttaagaaaccacatcgttaccgccccggaactgttgctctt 216
Query: 236 cgggagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccag 295
|| ||||| | ||||| |||||||| || ||||| ||||| | ||||| || | ||||
Sbjct: 217 cgtgagattaggaagtatcagaagagtactgagctcttgatcaggaagctcccctcccag 276
Query: 296 cgcctggtgcgtgagatcgcccaggacttcaagaccgacctccgcttccagag 348
| |||| ||||| || || |||||||||||||| ||||| || ||||||||
Sbjct: 277 aggttggttcgtgaaattgctcaggacttcaagactgaccttcgtttccagag 329
Score = 46.1 bits (23), Expect = 4e-005
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 404 gaggacaccaacctctgcgccattcacgccaagcgcgtcaccatcatgcccaaggacatc 463
|||||||| ||| | ||||| || || |||||||| || || || |||||||||||||||
Sbjct: 385 gaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaaggacatc 444
Query: 464 cag 466
|||
Sbjct: 445 cag 447
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 56.0 bits (28), Expect = 4e-008
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 250 gtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgcctggtgcgtga 309
||||||||||||||| ||||| |||||| | || || || ||||| || || || |||||
Sbjct: 109 gtaccagaagagcacagagcttctgatcaggaaacttccattccaacgtcttgttcgtga 168
Query: 310 gatcgcccaggacttcaagaccga 333
|||||| ||||| ||||| |||||
Sbjct: 169 gatcgcacaggatttcaaaaccga 192
>gb|CO517274.1|CO517274 s13dSG32H0900080_486144 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 56.0 bits (28), Expect = 4e-008
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgc 298
|||||||| |||||||||||||| || ||||| ||||||||||||| || || |||||
Sbjct: 575 gagatccgtaagtaccagaagagtaccgagcttttgatccgcaagcttccatttcagcgt 516
Query: 299 ctggtgcgtgagatcgcccaggacttcaagac 330
|| || ||||| || || || || ||||||||
Sbjct: 515 cttgtccgtgaaattgctcaagatttcaagac 484
>gb|U09458.1|MSU09458 Medicago sativa cultivar Chief histone H3.2 gene, 5' region and
complete cds
Length = 1676
Score = 54.0 bits (27), Expect = 1e-007
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 239 gagatccgcaagtaccagaagagcacggagctgctgatccgcaagct 285
|||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct: 964 gagatccgtaagtaccagaagagtaccgagcttttgatccgcaagct 1010
Score = 54.0 bits (27), Expect = 1e-007
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 119 tccactggcggcaaggcgccaaggaagcagctggccaccaagg 161
|||||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 513 tccactggtggtaaggctccaaggaagcagctcgccaccaagg 555
>gb|CO516848.1|CO516848 s13dSG98E0300019_447024 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 166
Score = 50.1 bits (25), Expect = 2e-006
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 248 aagtaccagaagagcacggagctgctgatccgcaagctgccgttccagcgcctggtgcgt 307
||||| |||||||| || ||||| ||||| | ||||| || |||||| | |||| |||
Sbjct: 15 aagtatcagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgt 74
Query: 308 gagatcgcccaggacttcaagaccgacctccgcttccagag 348
|| || || |||||||||||||| ||||| || ||||||||
Sbjct: 75 gaaattgctcaggacttcaagactgaccttcgtttccagag 115
>gb|AW698444.1|AW698444 g394 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 4e-005
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 404 gaggacaccaacctctgcgccattcacgccaagcgcgtcaccatcatgcccaaggacatc 463
|||||||| ||| | ||||| || || |||||||| || || || |||||||||||||||
Sbjct: 142 gaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaaggacatc 201
Query: 464 cag 466
|||
Sbjct: 202 cag 204
Score = 42.1 bits (21), Expect = 6e-004
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 300 tggtgcgtgagatcgcccaggacttcaagaccgacctccgcttccagag 348
|||| ||||| || || |||||||||||||| ||||| || ||||||||
Sbjct: 38 tggttcgtgaaattgctcaggacttcaagactgaccttcgtttccagag 86
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1157
Number of Sequences: 7669
Number of extensions: 1157
Number of successful extensions: 453
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 69
length of query: 758
length of database: 3,745,706
effective HSP length: 16
effective length of query: 742
effective length of database: 3,623,002
effective search space: 2688267484
effective search space used: 2688267484
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)