BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.452
(1348 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512900.1|CO512900 s13dSG86B0100009_121726 Glandular tr... 34 0.25
gb|AF411554.1| Medicago sativa dehydrin-like protein mRNA, ... 34 0.25
gb|AW698702.1|AW698702 R156 non-glandular-haired subtracted... 30 3.8
gb|CO512046.1|CO512046 s13dSG18C0100002_108412 Glandular tr... 30 3.8
gb|CO512826.1|CO512826 s13dSG20B1000077_121578 Glandular tr... 30 3.8
gb|CO513797.1|CO513797 s13dSG82F0400031_156256 Glandular tr... 30 3.8
gb|CO514430.1|CO514430 s13dSG36E1000081_327520 Glandular tr... 30 3.8
gb|CO514757.1|CO514757 s13dSG55G1000084_328174 Glandular tr... 30 3.8
gb|CO516218.1|CO516218 s13dSG67H0100012_445764 Glandular tr... 30 3.8
gb|CO516540.1|CO516540 s13dSG57C0800056_446408 Glandular tr... 30 3.8
gb|AF322116.2|AF322116 Medicago sativa sucrose-phosphate sy... 30 3.8
gb|AY468362.2| Medicago sativa sucrose-phosphate synthase g... 30 3.8
>gb|CO512900.1|CO512900 s13dSG86B0100009_121726 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 584
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 67 cataaccacctacacca 83
|||||||||||||||||
Sbjct: 318 cataaccacctacacca 302
>gb|AF411554.1| Medicago sativa dehydrin-like protein mRNA, complete cds
Length = 1353
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 67 cataaccacctacacca 83
|||||||||||||||||
Sbjct: 309 cataaccacctacacca 293
>gb|AW698702.1|AW698702 R156 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 184
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1051 ataaaataatggcct 1065
|||||||||||||||
Sbjct: 49 ataaaataatggcct 63
>gb|CO512046.1|CO512046 s13dSG18C0100002_108412 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 ctgaagaagataact 106
|||||||||||||||
Sbjct: 501 ctgaagaagataact 515
>gb|CO512826.1|CO512826 s13dSG20B1000077_121578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 530
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 ctgaagaagataact 106
|||||||||||||||
Sbjct: 396 ctgaagaagataact 410
>gb|CO513797.1|CO513797 s13dSG82F0400031_156256 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 549
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 gctgaagaagataac 105
|||||||||||||||
Sbjct: 339 gctgaagaagataac 353
>gb|CO514430.1|CO514430 s13dSG36E1000081_327520 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 607
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 ctgaagaagataact 106
|||||||||||||||
Sbjct: 501 ctgaagaagataact 515
>gb|CO514757.1|CO514757 s13dSG55G1000084_328174 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 505
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 696 tgaagaccgagcact 710
|||||||||||||||
Sbjct: 458 tgaagaccgagcact 472
>gb|CO516218.1|CO516218 s13dSG67H0100012_445764 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 358
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 676 ctacatggacccatt 690
|||||||||||||||
Sbjct: 158 ctacatggacccatt 144
>gb|CO516540.1|CO516540 s13dSG57C0800056_446408 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 520
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 696 tgaagaccgagcact 710
|||||||||||||||
Sbjct: 138 tgaagaccgagcact 152
>gb|AF322116.2|AF322116 Medicago sativa sucrose-phosphate synthase mRNA, complete cds
Length = 3579
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1206 atatacatgatttat 1220
|||||||||||||||
Sbjct: 2229 atatacatgatttat 2243
>gb|AY468362.2| Medicago sativa sucrose-phosphate synthase gene, promoter region and
complete cds
Length = 8933
Score = 30.2 bits (15), Expect = 3.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1206 atatacatgatttat 1220
|||||||||||||||
Sbjct: 7192 atatacatgatttat 7206
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2505
Number of Sequences: 7669
Number of extensions: 2505
Number of successful extensions: 664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 12
length of query: 1348
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1332
effective length of database: 3,623,002
effective search space: 4825838664
effective search space used: 4825838664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)