BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.426
(1721 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515574.1|CO515574 s13dSG47A0300021_418207 Glandular tr... 115 1e-025
gb|CO515747.1|CO515747 s13dSG77D0300030_419643 Glandular tr... 115 1e-025
gb|CO516729.1|CO516729 s13dSG74F0700061_446786 Glandular tr... 113 4e-025
gb|CO514896.1|CO514896 s13dSG56F1000091_328452 Glandular tr... 66 9e-011
gb|CO513977.1|CO513977 s13dSG71H0400032_156616 Glandular tr... 34 0.31
>gb|CO515574.1|CO515574 s13dSG47A0300021_418207 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 542
Score = 115 bits (58), Expect = 1e-025
Identities = 115/134 (85%)
Strand = Plus / Minus
Query: 1212 caatcagcaatacccttgtacggctctgatagcctaccagacttgatcatctcatcctga 1271
|||||| ||||||||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct: 501 caatcaccaatacccttgtagggctcagaaagcctaccagacttgatcatctcgtcctgg 442
Query: 1272 ttctgaataagcagcttcactcgttcaatgggagcagctgcagtcttcgaaacagcagct 1331
||||| || || ||||| | ||||| ||||||||||| || || || ||||| ||||||
Sbjct: 441 ttctggatcagaagcttaatacgttcgatgggagcagcagcggttttggaaacggcagct 382
Query: 1332 gaaacaccgcccat 1345
|||||||| |||||
Sbjct: 381 gaaacaccacccat 368
>gb|CO515747.1|CO515747 s13dSG77D0300030_419643 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 523
Score = 115 bits (58), Expect = 1e-025
Identities = 115/134 (85%)
Strand = Plus / Minus
Query: 1212 caatcagcaatacccttgtacggctctgatagcctaccagacttgatcatctcatcctga 1271
|||||| ||||||||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct: 506 caatcaccaatacccttgtagggctcagaaagcctaccagacttgatcatctcgtcctgg 447
Query: 1272 ttctgaataagcagcttcactcgttcaatgggagcagctgcagtcttcgaaacagcagct 1331
||||| || || ||||| | ||||| ||||||||||| || || || ||||| ||||||
Sbjct: 446 ttctggatcagaagcttaatacgttcgatgggagcagcagcggttttggaaacggcagct 387
Query: 1332 gaaacaccgcccat 1345
|||||||| |||||
Sbjct: 386 gaaacaccacccat 373
>gb|CO516729.1|CO516729 s13dSG74F0700061_446786 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 504
Score = 113 bits (57), Expect = 4e-025
Identities = 108/125 (86%)
Strand = Plus / Minus
Query: 1221 atacccttgtacggctctgatagcctaccagacttgatcatctcatcctgattctgaata 1280
||||||||||| ||||| || ||||||||||||||||||||||||||||| || || ||
Sbjct: 504 atacccttgtagggctcagagagcctaccagacttgatcatctcatcctggttttggatc 445
Query: 1281 agcagcttcactcgttcaatgggagcagctgcagtcttcgaaacagcagctgaaacaccg 1340
| ||||| | ||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 444 aaaagcttaatacgttcaatgggagcagcagcagttttggaaacggcagctgaaacacca 385
Query: 1341 cccat 1345
|||||
Sbjct: 384 cccat 380
>gb|CO514896.1|CO514896 s13dSG56F1000091_328452 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 65.9 bits (33), Expect = 9e-011
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 609 tggaatgcgtccaatgagctcttgtacttgacagcctcaccagaagtcatcatcatcctt 668
|||||||| | ||| ||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 115 tggaatgcatgcaaagagctgttatacttcacagcttctccagaagtcatcatcattctt 56
Query: 669 ctgcggacagtatcaatggggtaagatgcaagaccagcacc 709
|| || ||||| ||||||| ||||| || | |||||||||
Sbjct: 55 ctacgcacagtgccaatgggataagaggccaaaccagcacc 15
Score = 40.1 bits (20), Expect = 0.005
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 516 ccagaaagcacaccagcgccagcaatggcacgaagaatgttagcaccagcacccttgaac 575
|||| |||||||||||| || |||| ||||| | ||||| ||||||||||| |||||
Sbjct: 208 ccagcaagcacaccagcacctgcaacagcacgcaatatgtttgcaccagcacctttgaaa 149
Query: 576 agggactt 583
|| |||||
Sbjct: 148 agagactt 141
>gb|CO513977.1|CO513977 s13dSG71H0400032_156616 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 493
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1009 aagcaccagcagcacca 1025
|||||||||||||||||
Sbjct: 210 aagcaccagcagcacca 194
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5514
Number of Sequences: 7669
Number of extensions: 5514
Number of successful extensions: 1647
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1639
Number of HSP's gapped (non-prelim): 7
length of query: 1721
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1705
effective length of database: 3,623,002
effective search space: 6177218410
effective search space used: 6177218410
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)