BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.405
(1589 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514896.1|CO514896 s13dSG56F1000091_328452 Glandular tr... 74 3e-013
gb|CO512814.1|CO512814 s13dSG20A0800053_121554 Glandular tr... 36 0.073
gb|CO511717.1|CO511717 s13dSG01C0600050_103334 Glandular tr... 34 0.29
>gb|CO514896.1|CO514896 s13dSG56F1000091_328452 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 73.8 bits (37), Expect = 3e-013
Identities = 181/229 (79%)
Strand = Plus / Minus
Query: 428 accacctggagcttgtcgtacccagcaaggacaccagcaccagctacagcgcggaggatg 487
|||| ||| |||||||| || |||||||| ||||||||||| || ||||| || | |||
Sbjct: 229 accagctgcagcttgtcataaccagcaagcacaccagcacctgcaacagcacgcaatatg 170
Query: 488 tttgcgccagcacccttgaagagggacttggtaccctcctttgcgacaatctgcttgaaa 547
||||| |||||||| ||||| || ||||| |||||||| ||||| || || | |||
Sbjct: 169 tttgcaccagcacctttgaaaagagacttagtaccctcttttgcaacgatggtttggaat 110
Query: 548 gcgtccaaggagctgttgtacttgacggcctcaccagatgtcatcatcatgcgacggcga 607
|| | ||| |||||||| ||||| || || || ||||| ||||||||||| | | ||
Sbjct: 109 gcatgcaaagagctgttatacttcacagcttctccagaagtcatcatcattcttctacgc 50
Query: 608 acagtgtcaatggggtaggaggcaaggccagcaccaatggttatacccc 656
|||||| ||||||| || ||||| | ||||||||||| || |||||||
Sbjct: 49 acagtgccaatgggataagaggccaaaccagcaccaattgtgatacccc 1
>gb|CO512814.1|CO512814 s13dSG20A0800053_121554 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 602
Score = 36.2 bits (18), Expect = 0.073
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1001 ttgtccttcttaaagttg 1018
||||||||||||||||||
Sbjct: 557 ttgtccttcttaaagttg 540
>gb|CO511717.1|CO511717 s13dSG01C0600050_103334 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 353
Score = 34.2 bits (17), Expect = 0.29
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 396 caccaccagacccgtacttcttgccgaagacaa 428
||||||| || ||||| ||||||||||| ||||
Sbjct: 57 caccaccggatccgtatttcttgccgaacacaa 25
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3286
Number of Sequences: 7669
Number of extensions: 3286
Number of successful extensions: 1156
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 5
length of query: 1589
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1573
effective length of database: 3,623,002
effective search space: 5698982146
effective search space used: 5698982146
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)