BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.392
(725 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410137.1|AJ410137 AJ410137 Medicago sativa library (Ka... 34 0.13
gb|CO516081.1|CO516081 s13dSG65A0200005_445490 Glandular tr... 34 0.13
gb|CO516556.1|CO516556 s13dSG57E0400024_446440 Glandular tr... 34 0.13
gb|CO517209.1|CO517209 s13dSG32A0900069_486014 Glandular tr... 34 0.13
gb|CO517229.1|CO517229 s13dSG32C0900070_486054 Glandular tr... 34 0.13
>gb|AJ410137.1|AJ410137 AJ410137 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U584, mRNA sequence
Length = 857
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 266 aaagaaggaagaagagg 282
|||||||||||||||||
Sbjct: 282 aaagaaggaagaagagg 266
>gb|CO516081.1|CO516081 s13dSG65A0200005_445490 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 354
Score = 34.2 bits (17), Expect = 0.13
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 266 aaagaaggaagaagagg 282
|||||||||||||||||
Sbjct: 208 aaagaaggaagaagagg 192
>gb|CO516556.1|CO516556 s13dSG57E0400024_446440 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 400
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 266 aaagaaggaagaagaggaagc 286
|||| ||||||||||||||||
Sbjct: 66 aaaggaggaagaagaggaagc 86
>gb|CO517209.1|CO517209 s13dSG32A0900069_486014 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 600
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 266 aaagaaggaagaagaggaagc 286
|||| ||||||||||||||||
Sbjct: 392 aaaggaggaagaagaggaagc 372
>gb|CO517229.1|CO517229 s13dSG32C0900070_486054 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 600
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 266 aaagaaggaagaagaggaagc 286
|||| ||||||||||||||||
Sbjct: 392 aaaggaggaagaagaggaagc 372
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2718
Number of Sequences: 7669
Number of extensions: 2718
Number of successful extensions: 1050
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 5
length of query: 725
length of database: 3,745,706
effective HSP length: 16
effective length of query: 709
effective length of database: 3,623,002
effective search space: 2568708418
effective search space used: 2568708418
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)