BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.334
(1733 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512532.1|CO512532 s13dSG08C0200006_120990 Glandular tr... 204 2e-052
gb|CO516387.1|CO516387 s13dSG27A1200097_446102 Glandular tr... 90 6e-018
gb|AJ410137.1|AJ410137 AJ410137 Medicago sativa library (Ka... 34 0.32
gb|CO512357.1|CO512357 s13dSG80A0300017_114228 Glandular tr... 34 0.32
gb|CO514927.1|CO514927 s13dSG63B0600057_397359 Glandular tr... 34 0.32
gb|CO515572.1|CO515572 s13dSG53H1100096_418203 Glandular tr... 34 0.32
gb|CO516081.1|CO516081 s13dSG65A0200005_445490 Glandular tr... 34 0.32
gb|CO517265.1|CO517265 s13dSG32G0800068_486126 Glandular tr... 34 0.32
gb|AY532173.1| Medicago sativa sucrose-phosphate synthase (... 34 0.32
>gb|CO512532.1|CO512532 s13dSG08C0200006_120990 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 204 bits (103), Expect = 2e-052
Identities = 340/419 (81%)
Strand = Plus / Minus
Query: 1141 tcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcaggata 1200
|||||||||||||| |||||||||||||| |||||||| || ||| | |||||| |||
Sbjct: 569 tcagtctcacaaggaacatccttcttgattaagtggtttgtgtcattgtaggtcagaata 510
Query: 1201 gtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagat 1260
| ||| || || ||||| ||||| |||||||||||||| |||||||| || ||||| |
Sbjct: 509 gcgtgtacttttttggtactgtaaccacagatatctggaccaaacatgatactgtaggga 450
Query: 1261 gtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccg 1320
|| || || |||||||||||||| || ||||| || | |||||||| | ||| |||||
Sbjct: 449 gtatccccgccaaatttcttctgatcaacatcgccgctaagcaatttcatgtaaccacca 390
Query: 1321 ccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttg 1380
|| |||||||| ||||| || ||||| ||||| || || | || || || |||||||||
Sbjct: 389 ccacagtcaagtttctgttcatgcttgacagaaaattggaagactagtgtgttatccttg 330
Query: 1381 ttgctgaactcagggtattcggctgaaatggcatagaacctgtaatcctcggaggtttga 1440
|||||||| |||||| | || || || |||||||| || |||||||| || |||||||
Sbjct: 329 ttgctgaattcagggaactcagcagagatggcataaaatctgtaatcttcactggtttga 270
Query: 1441 atacctttgtcctcggcatctccattccattttcccgaagtgtggttccattcaccagcc 1500
||||||||||| | || || |||||||||| || || |||| |||||| || || |||
Sbjct: 269 atacctttgtcattagcgtcaccattccattgaccagaggtgtagttccactccccggcc 210
Query: 1501 atgttctcatccttcttccactcggacttgacccaccgactttcccagccatcttcgaa 1559
| |||||||||||||||||| || || || |||||||| |||||||| |||||||||||
Sbjct: 209 aagttctcatccttcttccattcagattttacccaccggctttcccatccatcttcgaa 151
>gb|CO516387.1|CO516387 s13dSG27A1200097_446102 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 118
Score = 89.7 bits (45), Expect = 6e-018
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 1057 ccagtttgcttctcttcattatcaatgagaatgctgtatgttgcatcaggacggatgatc 1116
|||||||||||||| | |||||||| | ||||||||| ||||||||||||||||||||
Sbjct: 84 ccagtttgcttctccacgttatcaatcaaaatgctgtaggttgcatcaggacggatgatg 25
Query: 1117 aaagtgtaaacatgagt 1133
|| ||||||||||||||
Sbjct: 24 aatgtgtaaacatgagt 8
>gb|AJ410137.1|AJ410137 AJ410137 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U584, mRNA sequence
Length = 857
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 530 cctcttcttccttcttt 546
|||||||||||||||||
Sbjct: 266 cctcttcttccttcttt 282
>gb|CO512357.1|CO512357 s13dSG80A0300017_114228 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 537
Score = 34.2 bits (17), Expect = 0.32
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 472 tcatcgtcttcctcatcctct 492
||||||||||| |||||||||
Sbjct: 45 tcatcgtcttcttcatcctct 65
>gb|CO514927.1|CO514927 s13dSG63B0600057_397359 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 478
Score = 34.2 bits (17), Expect = 0.32
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 472 tcatcgtcttcctcatcctct 492
||||||||||| |||||||||
Sbjct: 48 tcatcgtcttcttcatcctct 68
>gb|CO515572.1|CO515572 s13dSG53H1100096_418203 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 302
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 478 tcttcctcatcctctag 494
|||||||||||||||||
Sbjct: 99 tcttcctcatcctctag 83
>gb|CO516081.1|CO516081 s13dSG65A0200005_445490 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 354
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 530 cctcttcttccttcttt 546
|||||||||||||||||
Sbjct: 192 cctcttcttccttcttt 208
>gb|CO517265.1|CO517265 s13dSG32G0800068_486126 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 600
Score = 34.2 bits (17), Expect = 0.32
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1017 tttcttagggggaagaatatc 1037
|||||||||||||| ||||||
Sbjct: 148 tttcttagggggaacaatatc 168
>gb|AY532173.1| Medicago sativa sucrose-phosphate synthase (SPS) gene, promoter
region and partial cds
Length = 1257
Score = 34.2 bits (17), Expect = 0.32
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 409 ttctcatcatcagaatc 425
|||||||||||||||||
Sbjct: 50 ttctcatcatcagaatc 66
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4310
Number of Sequences: 7669
Number of extensions: 4310
Number of successful extensions: 1226
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 17
length of query: 1733
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1717
effective length of database: 3,623,002
effective search space: 6220694434
effective search space used: 6220694434
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)