BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.249
(684 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513398.1|CO513398 s13dSG38E1200087_129960 Glandular tr... 52 5e-007
gb|CO515891.1|CO515891 s13dSG91D0900076_421321 Glandular tr... 52 5e-007
gb|CO512871.1|CO512871 s13dSG20G0100004_121668 Glandular tr... 46 3e-005
gb|CO514195.1|CO514195 s13dSG70E0500035_157052 Glandular tr... 44 1e-004
gb|CO517225.1|CO517225 s13dSG32C0500038_486046 Glandular tr... 38 0.008
gb|CO513815.1|CO513815 s13dSG82H0900076_156292 Glandular tr... 32 0.49
gb|CO515889.1|CO515889 s13dSG91D0700060_421317 Glandular tr... 30 1.9
gb|CO512029.1|CO512029 s13dSG18A0500033_108378 Glandular tr... 28 7.6
gb|CO512498.1|CO512498 s13dSG100G070005_114510 Glandular tr... 28 7.6
gb|CO512499.1|CO512499 s13dSG100G080005_114512 Glandular tr... 28 7.6
gb|CO513471.1|CO513471 s13dSG10F0400031_130106 Glandular tr... 28 7.6
gb|CO514048.1|CO514048 s13dSG72F1200095_156758 Glandular tr... 28 7.6
gb|CO514079.1|CO514079 s13dSG75A1100081_156820 Glandular tr... 28 7.6
gb|CO514098.1|CO514098 s13dSG75C0600038_156858 Glandular tr... 28 7.6
gb|CO514357.1|CO514357 s13dSG84E1000071_157376 Glandular tr... 28 7.6
gb|CO514401.1|CO514401 s13dSG36B0500043_327462 Glandular tr... 28 7.6
gb|CO514428.1|CO514428 s13dSG36E0800065_327516 Glandular tr... 28 7.6
gb|CO514474.1|CO514474 s13dSG43B0500043_327608 Glandular tr... 28 7.6
gb|CO514565.1|CO514565 s13dSG42C0500038_327790 Glandular tr... 28 7.6
gb|CO514645.1|CO514645 s13dSG46C1100086_327950 Glandular tr... 28 7.6
gb|CO514701.1|CO514701 s13dSG55A0900069_328062 Glandular tr... 28 7.6
gb|CO515001.1|CO515001 s13dSG26B0500045_397507 Glandular tr... 28 7.6
gb|CO515027.1|CO515027 s13dSG26E0800067_397559 Glandular tr... 28 7.6
gb|CO515714.1|CO515714 s13dSG77A0300021_419577 Glandular tr... 28 7.6
gb|CO515834.1|CO515834 s13dSG54F0300027_421207 Glandular tr... 28 7.6
gb|CO515869.1|CO515869 s13dSG91A1000071_421277 Glandular tr... 28 7.6
gb|CO515877.1|CO515877 s13dSG91B1000079_421293 Glandular tr... 28 7.6
gb|CO515878.1|CO515878 s13dSG91B1200095_421295 Glandular tr... 28 7.6
gb|CO515955.1|CO515955 s13dSG61C0300018_445238 Glandular tr... 28 7.6
gb|CO516050.1|CO516050 s13dSG64D1100094_445428 Glandular tr... 28 7.6
gb|CO516079.1|CO516079 s13dSG64H1100096_445486 Glandular tr... 28 7.6
gb|CO516149.1|CO516149 s13dSG67A0200005_445626 Glandular tr... 28 7.6
gb|CO516372.1|CO516372 s13dSG99H0800074_446072 Glandular tr... 28 7.6
gb|CO516509.1|CO516509 s13dSG28H0500045_446346 Glandular tr... 28 7.6
gb|CO516726.1|CO516726 s13dSG74F0400032_446780 Glandular tr... 28 7.6
gb|M91079.1|ALFMSCHI1 Medicago sativa (cultivar Iroquois) c... 28 7.6
gb|AY468362.2| Medicago sativa sucrose-phosphate synthase g... 28 7.6
>gb|CO513398.1|CO513398 s13dSG38E1200087_129960 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 537
Score = 52.0 bits (26), Expect = 5e-007
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 392 ctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaaca 451
||||| ||||||||||| ||||||| ||| ||||| || | || | ||||| || |||
Sbjct: 286 ctgtgtcccacatcttcaaaatcattggttgcatctttccctgttgcagacaacaaaacc 227
Query: 452 tcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||||| |||||||| |||||||||| ||| ||| |||| |||||||||
Sbjct: 226 tcatcacctccaggatgatcctccataaaaggggtgacatcgtacacctt 177
>gb|CO515891.1|CO515891 s13dSG91D0900076_421321 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 52.0 bits (26), Expect = 5e-007
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 392 ctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaaca 451
||||| ||||||||||| ||||||| ||| ||||| || | || | ||||| ||||||
Sbjct: 289 ctgtgtcccacatcttcaaaatcattggttgcatctttccctgttgcagacaacagaacc 230
Query: 452 tcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||||| ||||| || |||||||||| ||| ||| |||| |||||||||
Sbjct: 229 tcatcacctccgggatgatcctccataaaaggggtgacatcgtacacctt 180
>gb|CO512871.1|CO512871 s13dSG20G0100004_121668 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 441
Score = 46.1 bits (23), Expect = 3e-005
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 248 tggaggatcttgatgacgaactcctgggtcttgtcctggttgtagtg 294
||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 363 tggaggatcttgatgacgaactctgatgtcttgtcctgattatagtg 317
>gb|CO514195.1|CO514195 s13dSG70E0500035_157052 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 518
Score = 44.1 bits (22), Expect = 1e-004
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 392 ctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaaca 451
||||| ||||||||||| ||||||| ||| ||||| || | || | ||||| || | |
Sbjct: 280 ctgtgtcccacatcttcaaaatcattggttgcatctttccctgttgcagacaacaaaccc 221
Query: 452 tcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||||| |||||||| |||||||||| ||| ||| |||| |||||||||
Sbjct: 220 tcatcacctccaggatgatcctccataaaaggggtgacatcgtacacctt 171
>gb|CO517225.1|CO517225 s13dSG32C0500038_486046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.008
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 392 ctgtgccccacatcttcgaaatcatcggtagcatc 426
||||| ||||||||||| ||||||| ||| |||||
Sbjct: 491 ctgtgtcccacatcttcaaaatcattggttgcatc 525
>gb|CO513815.1|CO513815 s13dSG82H0900076_156292 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 426
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 529 cttggtgttgtgcttg 544
||||||||||||||||
Sbjct: 83 cttggtgttgtgcttg 98
>gb|CO515889.1|CO515889 s13dSG91D0700060_421317 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 571
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 aaagactcaagtttc 90
|||||||||||||||
Sbjct: 58 aaagactcaagtttc 44
>gb|CO512029.1|CO512029 s13dSG18A0500033_108378 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 591
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 276 gtacttcaccttgg 263
>gb|CO512498.1|CO512498 s13dSG100G070005_114510 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 276 gtacttcaccttgg 263
>gb|CO512499.1|CO512499 s13dSG100G080005_114512 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 590
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 287 gtacttcaccttgg 274
>gb|CO513471.1|CO513471 s13dSG10F0400031_130106 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 599
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 241 gtacttcaccttgg 228
>gb|CO514048.1|CO514048 s13dSG72F1200095_156758 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 289 gtacttcaccttgg 276
>gb|CO514079.1|CO514079 s13dSG75A1100081_156820 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 538
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 273 gtacttcaccttgg 260
>gb|CO514098.1|CO514098 s13dSG75C0600038_156858 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 460
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 338 gctgcatcaatctc 351
||||||||||||||
Sbjct: 29 gctgcatcaatctc 16
>gb|CO514357.1|CO514357 s13dSG84E1000071_157376 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 269 gtacttcaccttgg 256
>gb|CO514401.1|CO514401 s13dSG36B0500043_327462 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 606
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 agcaaagactcaag 86
||||||||||||||
Sbjct: 163 agcaaagactcaag 150
>gb|CO514428.1|CO514428 s13dSG36E0800065_327516 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 637
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 276 gtacttcaccttgg 263
>gb|CO514474.1|CO514474 s13dSG43B0500043_327608 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 604
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 327 tgggtatcgtggct 340
||||||||||||||
Sbjct: 140 tgggtatcgtggct 127
>gb|CO514565.1|CO514565 s13dSG42C0500038_327790 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 611
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 267 gtacttcaccttgg 254
>gb|CO514645.1|CO514645 s13dSG46C1100086_327950 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 572
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 286 gtacttcaccttgg 273
>gb|CO514701.1|CO514701 s13dSG55A0900069_328062 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 515
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 286 gtacttcaccttgg 273
>gb|CO515001.1|CO515001 s13dSG26B0500045_397507 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 473
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 agcaaagactcaag 86
||||||||||||||
Sbjct: 163 agcaaagactcaag 150
>gb|CO515027.1|CO515027 s13dSG26E0800067_397559 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 466
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 276 gtacttcaccttgg 263
>gb|CO515714.1|CO515714 s13dSG77A0300021_419577 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 463
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 476 agaaacttggtcac 489
||||||||||||||
Sbjct: 13 agaaacttggtcac 26
>gb|CO515834.1|CO515834 s13dSG54F0300027_421207 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 540
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 287 gtacttcaccttgg 274
>gb|CO515869.1|CO515869 s13dSG91A1000071_421277 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 536
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 269 gtacttcaccttgg 256
>gb|CO515877.1|CO515877 s13dSG91B1000079_421293 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 506
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 399 ccacatcttcgaaa 412
||||||||||||||
Sbjct: 355 ccacatcttcgaaa 342
>gb|CO515878.1|CO515878 s13dSG91B1200095_421295 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 561
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 435 tggaagacagcaga 448
||||||||||||||
Sbjct: 265 tggaagacagcaga 252
>gb|CO515955.1|CO515955 s13dSG61C0300018_445238 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 417
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 345 caatctcacccact 358
||||||||||||||
Sbjct: 49 caatctcacccact 62
>gb|CO516050.1|CO516050 s13dSG64D1100094_445428 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 498
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 268 gtacttcaccttgg 255
>gb|CO516079.1|CO516079 s13dSG64H1100096_445486 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 286 gtacttcaccttgg 273
>gb|CO516149.1|CO516149 s13dSG67A0200005_445626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 367
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 336 tggctgcatcaatc 349
||||||||||||||
Sbjct: 56 tggctgcatcaatc 69
>gb|CO516372.1|CO516372 s13dSG99H0800074_446072 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 464
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 313 gtacttcaccttgg 326
||||||||||||||
Sbjct: 272 gtacttcaccttgg 259
>gb|CO516509.1|CO516509 s13dSG28H0500045_446346 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 435 tggaagacagcaga 448
||||||||||||||
Sbjct: 269 tggaagacagcaga 256
>gb|CO516726.1|CO516726 s13dSG74F0400032_446780 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 519
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 taacttattcagtt 135
||||||||||||||
Sbjct: 416 taacttattcagtt 429
>gb|M91079.1|ALFMSCHI1 Medicago sativa (cultivar Iroquois) chalcone isomerase (MsCHI-1)
mRNA, complete cds
Length = 950
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 336 tggctgcatcaatc 349
||||||||||||||
Sbjct: 42 tggctgcatcaatc 55
>gb|AY468362.2| Medicago sativa sucrose-phosphate synthase gene, promoter region
and complete cds
Length = 8933
Score = 28.2 bits (14), Expect = 7.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 attttatactaata 53
||||||||||||||
Sbjct: 506 attttatactaata 519
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1568
Number of Sequences: 7669
Number of extensions: 1568
Number of successful extensions: 321
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 43
length of query: 684
length of database: 3,745,706
effective HSP length: 16
effective length of query: 668
effective length of database: 3,623,002
effective search space: 2420165336
effective search space used: 2420165336
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)