BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT19a08.yg.2.1
(645 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA017100.1|CA017100 HV14M18u HV Hordeum vulgare subsp. v... 291 1e-077
gb|CA007888.1|CA007888 HU09E19r HU Hordeum vulgare subsp. v... 230 5e-059
gb|BM373115.2|BM373115 EBma04_SQ003_C15_R maternal, 10 DPA,... 178 1e-043
gb|BQ758997.1|BQ758997 EBma07_SQ003_P08_R maternal, 21 DPA,... 168 1e-040
gb|BI947034.1|BI947034 HVSMEl0003F09f Hordeum vulgare spike... 137 5e-031
gb|CA001848.1|CA001848 HS05M10r HS Hordeum vulgare subsp. v... 103 7e-021
gb|AL510453.1|AL510453 AL510453 Hordeum vulgare Barke devel... 60 9e-008
gb|CA005637.1|CA005637 HU09E19u HU Hordeum vulgare subsp. v... 50 9e-005
gb|BF624819.3|BF624819 HVSMEa0017N07f Hordeum vulgare seedl... 48 4e-004
gb|BF255465.2|BF255465 HVSMEf0006O24f Hordeum vulgare seedl... 48 4e-004
gb|BF260744.3|BF260744 HVSMEf0022N07f Hordeum vulgare seedl... 48 4e-004
gb|BU970588.1|BU970588 HB15B14r BC Hordeum vulgare subsp. v... 48 4e-004
gb|BU970614.1|BU970614 HB15C18r BC Hordeum vulgare subsp. v... 48 4e-004
gb|CB876810.1|CB876810 HP02H19T HP Hordeum vulgare subsp. v... 48 4e-004
gb|CB879498.1|CB879498 HP02H19w HP Hordeum vulgare subsp. v... 48 4e-004
gb|BI950978.1|BI950978 HVSMEl0023N24f Hordeum vulgare spike... 46 0.001
gb|BI950997.1|BI950997 HVSMEl0023P08f Hordeum vulgare spike... 46 0.001
gb|BQ472572.1|BQ472572 HB09C12T BC Hordeum vulgare subsp. v... 44 0.006
gb|BU968318.1|BU968318 HB07C12r BC Hordeum vulgare subsp. v... 44 0.006
gb|BI958433.1|BI958433 HVSMEn0014O24f Hordeum vulgare rachi... 38 0.35
gb|BQ465851.1|BQ465851 HU04N22r HU Hordeum vulgare subsp. v... 38 0.35
gb|CV059724.1|CV059724 BNEL50c4 Barley EST endosperm librar... 38 0.35
>gb|CA017100.1|CA017100 HV14M18u HV Hordeum vulgare subsp. vulgare cDNA clone HV14M18
3-PRIME, mRNA sequence
Length = 576
Score = 291 bits (147), Expect = 1e-077
Identities = 318/375 (84%)
Strand = Plus / Plus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || |||||||||||||||| || ||| ||||| | |||||||| |||||||
Sbjct: 189 gatcctcctcatcaacaacggcctcacttcgtgcctcccggccgaggtcgggatgctccg 248
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
||||||||| || |||||||||||||||||| | |||| || |||||||||| |||||
Sbjct: 249 ggaggtgacggtgttcgacgtcagcttcaacgccctcgcagggccgctgccgccacaggt 308
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
||||||||||| |||||||||||| | ||| | |||||||||| ||||| ||| ||||
Sbjct: 309 ggccgggatgcaaaaggtggagcagttcgacattgcgcacaacctgctgtcggggaccgt 368
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| |||||| |||||||||||| | ||| ||||||||||||||||
Sbjct: 369 gccggaggccgtgtgcgacctcccacggctcaagaacttcaccttctcctacaacttctt 428
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactg 300
||||||||||||||| ||||||||||||||||||||| | ||||| ||| | |||||||
Sbjct: 429 caccggcgagccgccatcctgcgcgcgcgtcgtgcctgccgacggcgaccgccggaactg 488
Query: 301 cctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagcc 360
||| ||| |||||||| | ||||||| |||||||||||||||||| ||||| | | ||
Sbjct: 489 cctccccgaccgccccgcccagcgcatgccgcagcagtgcgccgctttctatgcccgccc 548
Query: 361 gcccgtcgactgcgc 375
||||||||||||||
Sbjct: 549 acccgtcgactgcgc 563
>gb|CA007888.1|CA007888 HU09E19r HU Hordeum vulgare subsp. vulgare cDNA clone HU09E19
5-PRIME, mRNA sequence
Length = 516
Score = 230 bits (116), Expect = 5e-059
Identities = 233/272 (85%)
Strand = Plus / Plus
Query: 104 ccgctgccgcagcaggtggccgggatgcgcaaggtggagcagctggacgtcgcgcacaac 163
|||||||||| |||||||||||||||| |||||||||||| | ||| | |||||||||
Sbjct: 13 ccgctgccgccacaggtggccgggatgcaaaaggtggagcagttcgacattgcgcacaac 72
Query: 164 cgcctgtccggggccgtcccggaggccatctgcgccctcccgcggctcaagaacctgacc 223
| ||||| ||| |||| ||||||||| | |||| |||||| |||||||||||| | |||
Sbjct: 73 ctgctgtcggggaccgtgccggaggccgtgtgcgacctcccacggctcaagaacttcacc 132
Query: 224 atctcctacaacttcttcaccggcgagccgccgtcctgcgcgcgcgtcgtgccttcggac 283
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct: 133 ttctcctacaacttcttcaccggcgagccgccatcctgcgcgcgcgtcgtgcctgccgac 192
Query: 284 ggtgacaggaggaactgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgcc 343
|| ||| | |||||||||| ||| |||||||| | ||||||| ||||||||||||||||
Sbjct: 193 ggcgaccgccggaactgcctccccgaccgccccgcccagcgcatgccgcagcagtgcgcc 252
Query: 344 gcgttctactcgcagccgcccgtcgactgcgc 375
|| ||||| | | || ||||||||||||||
Sbjct: 253 gctttctatgcccgcccacccgtcgactgcgc 284
Score = 77.8 bits (39), Expect = 4e-013
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 373 cgccatcataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgc 432
||||| |||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 329 cgccagcataccccggcccgttgccaccagtataccccatgccatacgcgtcgccgccgc 388
Query: 433 cacctgcgcagtaccgatgattc 455
| ||| | | ||||||||||||
Sbjct: 389 cgcctccacgctaccgatgattc 411
>gb|BM373115.2|BM373115 EBma04_SQ003_C15_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ003_C15 5', mRNA sequence
Length = 486
Score = 178 bits (90), Expect = 1e-043
Identities = 168/194 (86%)
Strand = Plus / Plus
Query: 182 ccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttc 241
||||||||| | |||| |||||| |||||||||||| | ||| |||||||||||||||||
Sbjct: 4 ccggaggccgtgtgcgacctcccacggctcaagaacttcaccttctcctacaacttcttc 63
Query: 242 accggcgagccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgc 301
|||||||||||||| ||||||||||||||||||||| | ||||| ||| | ||||||||
Sbjct: 64 accggcgagccgccatcctgcgcgcgcgtcgtgcctgccgacggcgaccgccggaactgc 123
Query: 302 ctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccg 361
|| ||| |||||||| | ||||||| |||||||||||||||||| ||||| | | ||
Sbjct: 124 ctccccgaccgccccgcccagcgcatgccgcagcagtgcgccgctttctatgcccgccca 183
Query: 362 cccgtcgactgcgc 375
||||||||||||||
Sbjct: 184 cccgtcgactgcgc 197
Score = 77.8 bits (39), Expect = 4e-013
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 373 cgccatcataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgc 432
||||| |||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 242 cgccagcataccccggcccgttgccaccagtataccccatgccatacgcgtcgccgccgc 301
Query: 433 cacctgcgcagtaccgatgattc 455
| ||| | | ||||||||||||
Sbjct: 302 cgcctccacgctaccgatgattc 324
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 584 gttcttgattgatagctaccggcatatagaaga 616
||||||||||||||||||||||| || ||||||
Sbjct: 448 gttcttgattgatagctaccggcgtaaagaaga 480
>gb|BQ758997.1|BQ758997 EBma07_SQ003_P08_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ003_P08 5', mRNA sequence
Length = 279
Score = 168 bits (85), Expect = 1e-040
Identities = 154/177 (87%)
Strand = Plus / Plus
Query: 199 cctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccgtc 258
|||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||| ||
Sbjct: 5 cctcccacggctcaagaacttcaccttctcctacaacttcttcaccggcgagccgccatc 64
Query: 259 ctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaaccgccccac 318
||||||||||||||||||| | ||||| ||| | |||||||||| ||| |||||||| |
Sbjct: 65 ctgcgcgcgcgtcgtgcctgccgacggcgaccgccggaactgcctccccgaccgccccgc 124
Query: 319 acagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcgactgcgc 375
||||||| |||||||||||||||||| ||||| | | || ||||||||||||||
Sbjct: 125 ccagcgcatgccgcagcagtgcgccgctttctatgcccgcccacccgtcgactgcgc 181
Score = 65.9 bits (33), Expect = 2e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 373 cgccatcataccccggcccgttgccaccggtataccctatgccgtacgc 421
||||| |||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 227 cgccagcataccccggcccgttgccaccagtataccccatgccatacgc 275
>gb|BI947034.1|BI947034 HVSMEl0003F09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003F09f, mRNA sequence
Length = 1107
Score = 137 bits (69), Expect = 5e-031
Identities = 189/229 (82%)
Strand = Plus / Plus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || |||||||||||||||| || ||| ||||| | |||||||| |||||||
Sbjct: 174 gatcctcctcatcaacaacggcctcacttcgtgcctcccggccgaggtcgggatgctccg 233
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
||||||||| || |||||||||||||||||| | |||| || |||||||||| |||||
Sbjct: 234 ggaggtgacggtgttcgacgtcagcttcaacgccctcgcagggccgctgccgccacaggt 293
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
||||||||||| ||||||||||| | ||| | |||||||||| ||||||||| ||||
Sbjct: 294 ggccgggatgcaaaaggtggagcacgtcgacattgcgcacaacctgctgtccgggaccgt 353
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcc 229
||||||||| | ||| |||||| ||||| ||||| || ||| |||||
Sbjct: 354 gccggaggccgtgtgccacctcccacggcttaagaaacttaccttctcc 402
>gb|CA001848.1|CA001848 HS05M10r HS Hordeum vulgare subsp. vulgare cDNA clone HS05M10
5-PRIME, mRNA sequence
Length = 451
Score = 103 bits (52), Expect = 7e-021
Identities = 214/268 (79%)
Strand = Plus / Plus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||||||||||| | || ||| | ||||||||| ||||| || |||||| | ||
Sbjct: 168 catcaacaacggcctcaagtcatgcctgccgccggagatcggccgcctgcgggagctcac 227
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||| |||||| |||| ||||| |||||||| ||||| ||||||| ||| |
Sbjct: 228 ggtgctcgatgtcagccacaaccagctcgccggcccgctcacgcaggaggtggcggggct 287
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | ||| |||||||||| ||||||||||||||| || || ||| | | || ||||
Sbjct: 288 gaggaagctggagcagctcaacgtcgcgcacaacctgctctctgggccgataccccaggc 347
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| | ||||| || ||||| ||||||||| | ||| |||| ||||||||||||||||| ||
Sbjct: 348 cgtgtgcgcgctgccgcgactcaagaacttcaccttctcatacaacttcttcaccgggga 407
Query: 250 gccgccgtcctgcgcgcgcgtcgtgcct 277
||||||| | ||||||||||||||||||
Sbjct: 408 gccgccggcgtgcgcgcgcgtcgtgcct 435
>gb|AL510453.1|AL510453 AL510453 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04P17u 3',
mRNA sequence
Length = 700
Score = 60.0 bits (30), Expect = 9e-008
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 379 cataccccggcccgttgcca-ccggtataccctatgccgtacgcatcgcctccgccacct 437
|||||||||||||||||||| || |||||||| ||||| ||||| ||||| ||||| |||
Sbjct: 570 cataccccggcccgttgccacccagtataccccatgccatacgcgtcgccgccgccgcct 511
Query: 438 gcgcagtaccgatgattc 455
| | ||||||||||||
Sbjct: 510 ccacgctaccgatgattc 493
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 584 gttcttgattgatagctaccggcatatagaaga 616
||||||||||||||||||||||| || ||||||
Sbjct: 369 gttcttgattgatagctaccggcgtaaagaaga 337
>gb|CA005637.1|CA005637 HU09E19u HU Hordeum vulgare subsp. vulgare cDNA clone HU09E19
3-PRIME, mRNA sequence
Length = 346
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 584 gttcttgattgatagctaccggcatatagaaga 616
||||||||||||||||||||||| || ||||||
Sbjct: 314 gttcttgattgatagctaccggcgtaaagaaga 282
>gb|BF624819.3|BF624819 HVSMEa0017N07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017N07f, mRNA sequence
Length = 672
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 120 tggccgggatgcgcaaggtggagcagctggacgtcgcgcacaac 163
|||||||||||| | | |||||||||| |||||||||||||||
Sbjct: 205 tggccgggatgcacgcgctggagcagctcgacgtcgcgcacaac 248
>gb|BF255465.2|BF255465 HVSMEf0006O24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006O24f, mRNA sequence
Length = 603
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 120 tggccgggatgcgcaaggtggagcagctggacgtcgcgcacaac 163
|||||||||||| | | |||||||||| |||||||||||||||
Sbjct: 306 tggccgggatgcacgcgctggagcagctcgacgtcgcgcacaac 349
>gb|BF260744.3|BF260744 HVSMEf0022N07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022N07f, mRNA sequence
Length = 674
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 120 tggccgggatgcgcaaggtggagcagctggacgtcgcgcacaac 163
|||||||||||| | | |||||||||| |||||||||||||||
Sbjct: 205 tggccgggatgcacgcgctggagcagctcgacgtcgcgcacaac 248
>gb|BU970588.1|BU970588 HB15B14r BC Hordeum vulgare subsp. vulgare cDNA clone HB15B14
5-PRIME, mRNA sequence
Length = 508
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 120 tggccgggatgcgcaaggtggagcagctggacgtcgcgcacaac 163
|||||||||||| | | |||||||||| |||||||||||||||
Sbjct: 430 tggccgggatgcacgcgctggagcagctcgacgtcgcgcacaac 473
>gb|BU970614.1|BU970614 HB15C18r BC Hordeum vulgare subsp. vulgare cDNA clone HB15C18
5-PRIME, mRNA sequence
Length = 511
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 120 tggccgggatgcgcaaggtggagcagctggacgtcgcgcacaac 163
|||||||||||| | | |||||||||| |||||||||||||||
Sbjct: 430 tggccgggatgcacgcgctggagcagctcgacgtcgcgcacaac 473
>gb|CB876810.1|CB876810 HP02H19T HP Hordeum vulgare subsp. vulgare cDNA clone HP02H19
5-PRIME, mRNA sequence
Length = 648
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 120 tggccgggatgcgcaaggtggagcagctggacgtcgcgcacaac 163
|||||||||||| | | |||||||||| |||||||||||||||
Sbjct: 330 tggccgggatgcacgcgctggagcagctcgacgtcgcgcacaac 373
>gb|CB879498.1|CB879498 HP02H19w HP Hordeum vulgare subsp. vulgare cDNA clone HP02H19
3-PRIME, mRNA sequence
Length = 648
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 120 tggccgggatgcgcaaggtggagcagctggacgtcgcgcacaac 163
|||||||||||| | | |||||||||| |||||||||||||||
Sbjct: 370 tggccgggatgcacgcgctggagcagctcgacgtcgcgcacaac 327
>gb|BI950978.1|BI950978 HVSMEl0023N24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023N24f, mRNA sequence
Length = 552
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 580 tagtgttcttgattgatagctaccggc 606
||||||||||||||||| |||||||||
Sbjct: 271 tagtgttcttgattgatggctaccggc 297
>gb|BI950997.1|BI950997 HVSMEl0023P08f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023P08f, mRNA sequence
Length = 537
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 580 tagtgttcttgattgatagctaccggc 606
||||||||||||||||| |||||||||
Sbjct: 257 tagtgttcttgattgatggctaccggc 283
>gb|BQ472572.1|BQ472572 HB09C12T BC Hordeum vulgare subsp. vulgare cDNA clone HB09C12
5-PRIME, mRNA sequence
Length = 486
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaac 163
|||||||||| |||||||||||||||
Sbjct: 17 tggagcagctcgacgtcgcgcacaac 42
>gb|BU968318.1|BU968318 HB07C12r BC Hordeum vulgare subsp. vulgare cDNA clone HB07C12
5-PRIME, mRNA sequence
Length = 504
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaac 163
|||||||||| |||||||||||||||
Sbjct: 17 tggagcagctcgacgtcgcgcacaac 42
>gb|BI958433.1|BI958433 HVSMEn0014O24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014O24f, mRNA sequence
Length = 665
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 261 gcgcgcgcgtcgtgccttc 279
|||||||||||||||||||
Sbjct: 25 gcgcgcgcgtcgtgccttc 7
>gb|BQ465851.1|BQ465851 HU04N22r HU Hordeum vulgare subsp. vulgare cDNA clone HU04N22
5-PRIME, mRNA sequence
Length = 383
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgc 158
|||||||||||||||||||
Sbjct: 182 gagcagctggacgtcgcgc 200
>gb|CV059724.1|CV059724 BNEL50c4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL50c4 5' similar to
OSJNBa0008M17.14, mRNA sequence
Length = 570
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgc 158
|||||||||||||||||||
Sbjct: 172 gagcagctggacgtcgcgc 190
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,027
Number of Sequences: 312970
Number of extensions: 82027
Number of successful extensions: 23081
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23043
Number of HSP's gapped (non-prelim): 37
length of query: 645
length of database: 175,134,539
effective HSP length: 19
effective length of query: 626
effective length of database: 169,188,109
effective search space: 105911756234
effective search space used: 105911756234
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)