BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA li... 182 3e-045
gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA li... 182 3e-045
gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA li... 182 3e-045
gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA li... 151 1e-035
gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA li... 76 6e-013
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 42 0.008
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 42 0.008
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.008
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 42 0.008
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 42 0.008
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 40 0.032
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.032
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.032
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.032
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.032
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.032
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.032
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.032
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.13
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 36 0.50
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 36 0.50
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 36 0.50
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 36 0.50
gb|BM371400.1|BM371400 EBma08_SQ002_J07_R maternal, 28 DPA,... 36 0.50
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 36 0.50
gb|BM371413.1|BM371413 EBma08_SQ002_K05_R maternal, 28 DPA,... 36 0.50
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 36 0.50
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 36 0.50
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 36 0.50
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 36 0.50
gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA li... 36 0.50
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 36 0.50
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 36 0.50
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 36 0.50
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 36 0.50
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 36 0.50
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 36 0.50
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 36 0.50
gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, ... 36 0.50
dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 36 0.50
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 34 2.0
gb|BJ447607.1|BJ447607 BJ447607 K. Sato unpublished cDNA li... 34 2.0
gb|BJ455361.1|BJ455361 BJ455361 K. Sato unpublished cDNA li... 34 2.0
gb|BM377791.2|BM377791 EBem04_SQ004_D01_R embryo, 12 DPA, n... 34 2.0
gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. v... 34 2.0
gb|CA014686.1|CA014686 HT12B01r HT Hordeum vulgare subsp. v... 34 2.0
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 34 2.0
gb|AZ048462.1|AZ048462 PSB134 Barley PstI genomic clones Ho... 32 7.8
gb|AL506431.1|AL506431 AL506431 Hordeum vulgare Barke devel... 32 7.8
gb|AV833511.1|AV833511 AV833511 K. Sato unpublished cDNA li... 32 7.8
gb|BI959973.1|BI959973 HVSMEn0022L09f Hordeum vulgare rachi... 32 7.8
gb|BJ462863.1|BJ462863 BJ462863 K. Sato unpublished cDNA li... 32 7.8
gb|BQ472480.1|BQ472480 HB09G17T BC Hordeum vulgare subsp. v... 32 7.8
gb|BM928860.1|BM928860 LP30003 Lemma/palea-enriched cDNA li... 32 7.8
gb|BQ294534.1|BQ294534 LP20084 Lemma/palea-enriched cDNA li... 32 7.8
gb|BQ294541.1|BQ294541 LP20150 Lemma/palea-enriched cDNA li... 32 7.8
gb|BU968408.1|BU968408 HB07G17r BC Hordeum vulgare subsp. v... 32 7.8
>gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 5', mRNA sequence
Length = 611
Score = 182 bits (92), Expect = 3e-045
Identities = 191/224 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| || ||||| || || ||||| || |||| ||| |||||||||||||| |||
Sbjct: 480 ctgaagtaaaagccaatggtagtatagtagcaggacaacattctgaagaaatcaaaacga 421
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || |||||||||||||||||||| || |||||||| || |||| |||||||||
Sbjct: 420 tggccaagtcggtagatgtcacggctcagagtctgttcgccgttaccatatgctatcttc 361
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || || ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 360 gcctcaaatagtgaaatctgattgagaccaacatctcttcccttgccaacttgcatgtat 301
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcc 243
||||| || ||||| || ||||| |||| ||| |||||||||||
Sbjct: 300 tcatgatgtgtaacgtttccttcacgcagtgttgaattgaatcc 257
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 5', mRNA sequence
Length = 589
Score = 182 bits (92), Expect = 3e-045
Identities = 191/224 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| || ||||| || || ||||| || |||| ||| |||||||||||||| |||
Sbjct: 251 ctgaagtaaaagccaatggtagtatagtagcaggacaacattctgaagaaatcaaaacga 192
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || |||||||||||||||||||| || |||||||| || |||| |||||||||
Sbjct: 191 tggccaagtcggtagatgtcacggctcagagtctgttcgccgttaccatatgctatcttc 132
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || || ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 131 gcctcaaatagtgaaatctgattgagaccaacatctcttcccttgccaacttgcatgtat 72
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcc 243
||||| || ||||| || ||||| |||| ||| |||||||||||
Sbjct: 71 tcatgatgtgtaacgtttccttcacgcagtgttgaattgaatcc 28
>gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 5', mRNA sequence
Length = 537
Score = 182 bits (92), Expect = 3e-045
Identities = 191/224 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| || ||||| || || ||||| || |||| ||| |||||||||||||| |||
Sbjct: 262 ctgaagtaaaagccaatggtagtatagtagcaggacaacattctgaagaaatcaaaacga 203
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || |||||||||||||||||||| || |||||||| || |||| |||||||||
Sbjct: 202 tggccaagtcggtagatgtcacggctcagagtctgttcgccgttaccatatgctatcttc 143
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || || ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 142 gcctcaaatagtgaaatctgattgagaccaacatctcttcccttgccaacttgcatgtat 83
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcc 243
||||| || ||||| || ||||| |||| ||| |||||||||||
Sbjct: 82 tcatgatgtgtaacgtttccttcacgcagtgttgaattgaatcc 39
>gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 5', mRNA sequence
Length = 582
Score = 151 bits (76), Expect = 1e-035
Identities = 166/195 (85%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| || ||||| || || ||||| || |||| ||| |||||||||||||| |||
Sbjct: 239 ctgaagtaaaagccaatggtagtatagtagcaggacaacattctgaagaaatcaaaacga 180
Query: 80 tgacctagccggtagatgtcacggctcagcgtt-tgttcgccattgccatttgctatctt 138
|| || || |||||||||||||||||||| || |||||||| || |||| |||||||||
Sbjct: 179 tggccaagtcggtagatgtcacggctcagagtnctgttcgccgttaccatatgctatctt 120
Query: 139 tgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgta 198
|||||||| || || || ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 119 cgcctcaaatagtgaaatctgattgagaccaacatctcttcccttgccaacttgcatgta 60
Query: 199 ttcatggtgagtaac 213
|||||| || |||||
Sbjct: 59 ttcatgatgtgtaac 45
>gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28g06 5', mRNA sequence
Length = 666
Score = 75.8 bits (38), Expect = 6e-013
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 98 tcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatatt 157
||||||||||| ||||| || ||||||||| | || | ||| || ||||||| ||| |
Sbjct: 331 tcacggctcagagtttgctcaccattgccactagcaaccttggcttcaaacatagaaacc 272
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacattg 217
|| ||||| || |||||||||||||| ||||| || ||||| |||||||| |||||||||
Sbjct: 271 tggttgagccccacatcccttcctttaccaacctggatgtactcatggtgtgtaacattg 212
Query: 218 cc 219
||
Sbjct: 211 cc 210
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.008
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 290 gcggccgcccgggcaggtact 270
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 283 gcggccgcccgggcaggtac 302
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.008
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 347 gcggccgcccgggcaggtact 327
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 340 gcggccgcccgggcaggt 357
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.008
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 353 gcggccgcccgggcaggtact 333
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.008
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 519 gcggccgcccgggcaggtact 499
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 42.1 bits (21), Expect = 0.008
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 433 gcggccgcccgggcaggtact 413
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 360 gcggccgcccgggcaggtac 341
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 254 gcggccgcccgggcaggtac 273
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 261 gcggccgcccgggcaggtac 242
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage
of kernel Hordeum vulgare subsp. vulgare cDNA clone
1-7, mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 10 gcggccgcccgggcaggtac 29
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 260 gcggccgcccgggcaggtac 241
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 281 gcggccgcccgggcaggtac 262
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 103
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 103
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.032
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 342
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 330 gcggccgcccgggcaggta 312
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 38.2 bits (19), Expect = 0.13
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtac 20
|||||||||||||||||||
Sbjct: 212 cggccgcccgggcaggtac 194
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 83 gcggccgcccgggcaggt 100
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 83 gcggccgcccgggcaggt 100
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggt 101
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 83 gcggccgcccgggcaggt 100
>gb|BM371400.1|BM371400 EBma08_SQ002_J07_R maternal, 28 DPA, no treatment, cv Optic,
EBma08 Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J07 5', mRNA sequence
Length = 379
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 80 gcggccgcccgggcaggt 97
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggt 101
>gb|BM371413.1|BM371413 EBma08_SQ002_K05_R maternal, 28 DPA, no treatment, cv Optic,
EBma08 Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K05 5', mRNA sequence
Length = 379
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 80 gcggccgcccgggcaggt 97
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggt 101
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggt 101
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggt 101
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 83 gcggccgcccgggcaggt 100
>gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-283,
mRNA sequence
Length = 294
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 237 gcggccgcccgggcaggt 220
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 118 gcggccgcccgggcaggt 135
>gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J04 5', mRNA sequence
Length = 393
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggt 101
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 118 gcggccgcccgggcaggt 135
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 83 gcggccgcccgggcaggt 100
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 118 gcggccgcccgggcaggt 135
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggt 101
>gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L03 5', mRNA sequence
Length = 413
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 104 gcggccgcccgggcaggt 121
>gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_L08 5', mRNA sequence
Length = 202
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggt 101
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
Length = 1285
Score = 36.2 bits (18), Expect = 0.50
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggt 22
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 34.2 bits (17), Expect = 2.0
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 170 acatcccttcctttgccaacttgcatgtattcatggtgagt 210
||||| |||||||| ||||| || || || |||||||||||
Sbjct: 78 acatctcttcctttaccaacctggatatactcatggtgagt 38
>gb|BJ447607.1|BJ447607 BJ447607 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16i11 5', mRNA sequence
Length = 699
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 174 cccttcctttgccaact 190
|||||||||||||||||
Sbjct: 325 cccttcctttgccaact 309
>gb|BJ455361.1|BJ455361 BJ455361 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16i11 3', mRNA sequence
Length = 650
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 174 cccttcctttgccaact 190
|||||||||||||||||
Sbjct: 325 cccttcctttgccaact 341
>gb|BM377791.2|BM377791 EBem04_SQ004_D01_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ004_D01 5', mRNA sequence
Length = 605
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17 gtactgaagtagaaacc 33
|||||||||||||||||
Sbjct: 527 gtactgaagtagaaacc 511
>gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10J09
5-PRIME, mRNA sequence
Length = 426
Score = 34.2 bits (17), Expect = 2.0
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 170 acatcccttcctttgccaacttgcatgtattcatggtgagt 210
||||| |||||||| ||||| || || || |||||||||||
Sbjct: 108 acatctcttcctttaccaacctggatatactcatggtgagt 68
>gb|CA014686.1|CA014686 HT12B01r HT Hordeum vulgare subsp. vulgare cDNA clone HT12B01
5-PRIME, mRNA sequence
Length = 299
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17 gtactgaagtagaaacc 33
|||||||||||||||||
Sbjct: 219 gtactgaagtagaaacc 203
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 34.2 bits (17), Expect = 2.0
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 170 acatcccttcctttgccaacttgcatgtattcatggtgagt 210
||||| |||||||| ||||| || || || |||||||||||
Sbjct: 4420 acatctcttcctttaccaacctggatatactcatggtgagt 4380
>gb|AZ048462.1|AZ048462 PSB134 Barley PstI genomic clones Hordeum vulgare subsp. vulgare
genomic clone PSB134, DNA sequence
Length = 1551
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 55 cagcatcctgaagaaa 70
||||||||||||||||
Sbjct: 984 cagcatcctgaagaaa 999
>gb|AL506431.1|AL506431 AL506431 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03B17T 5',
mRNA sequence
Length = 700
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gagatatttgattgag 165
||||||||||||||||
Sbjct: 524 gagatatttgattgag 509
>gb|AV833511.1|AV833511 AV833511 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags14a02, mRNA sequence
Length = 595
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gagatatttgattgag 165
||||||||||||||||
Sbjct: 419 gagatatttgattgag 404
>gb|BI959973.1|BI959973 HVSMEn0022L09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022L09f, mRNA sequence
Length = 643
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gagatatttgattgag 165
||||||||||||||||
Sbjct: 569 gagatatttgattgag 554
>gb|BJ462863.1|BJ462863 BJ462863 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24l09 5', mRNA sequence
Length = 570
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gagatatttgattgag 165
||||||||||||||||
Sbjct: 195 gagatatttgattgag 180
>gb|BQ472480.1|BQ472480 HB09G17T BC Hordeum vulgare subsp. vulgare cDNA clone HB09G17
5-PRIME, mRNA sequence
Length = 700
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gagatatttgattgag 165
||||||||||||||||
Sbjct: 378 gagatatttgattgag 363
>gb|BM928860.1|BM928860 LP30003 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-3
similar to Catalase 2 gene, mRNA sequence
Length = 362
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtac 20
||||||||||||||||
Sbjct: 362 ccgcccgggcaggtac 347
>gb|BQ294534.1|BQ294534 LP20084 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-84
similar to H. vulgare paf93 gene homologous to Cor47,
Accession No. D63835, mRNA sequence
Length = 642
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcag 16
||||||||||||||||
Sbjct: 610 gcggccgcccgggcag 595
>gb|BQ294541.1|BQ294541 LP20150 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-150
similar to H.vulgare Bsi1 gene for putative protease
inhibitor, Accession No. Z48729, mRNA sequence
Length = 412
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3 ggccgcccgggcaggt 18
||||||||||||||||
Sbjct: 353 ggccgcccgggcaggt 338
>gb|BU968408.1|BU968408 HB07G17r BC Hordeum vulgare subsp. vulgare cDNA clone HB07G17
5-PRIME, mRNA sequence
Length = 618
Score = 32.2 bits (16), Expect = 7.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gagatatttgattgag 165
||||||||||||||||
Sbjct: 378 gagatatttgattgag 363
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,898
Number of Sequences: 312970
Number of extensions: 18898
Number of successful extensions: 4964
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4901
Number of HSP's gapped (non-prelim): 62
length of query: 247
length of database: 175,134,539
effective HSP length: 18
effective length of query: 229
effective length of database: 169,501,079
effective search space: 38815747091
effective search space used: 38815747091
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)