BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL28h07.yg.2.1
(277 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA li... 226 3e-058
gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA li... 226 3e-058
gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no... 226 3e-058
gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedl... 202 4e-051
gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DA... 127 2e-028
gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA li... 127 2e-028
gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA li... 125 8e-028
gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. v... 70 4e-011
gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. v... 62 1e-008
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 54 2e-006
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 54 2e-006
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 54 2e-006
gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. v... 54 2e-006
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 54 2e-006
gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA li... 52 1e-005
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 52 1e-005
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 50 4e-005
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 50 4e-005
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 50 4e-005
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 50 4e-005
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 50 4e-005
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 50 4e-005
gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. v... 50 4e-005
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 6e-004
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 6e-004
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 6e-004
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 6e-004
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 6e-004
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 6e-004
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 6e-004
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 6e-004
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 6e-004
gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA li... 46 6e-004
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 46 6e-004
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 6e-004
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 6e-004
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 6e-004
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 6e-004
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 6e-004
gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, ... 46 6e-004
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 44 0.002
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 44 0.002
dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 44 0.002
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.036
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.036
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.14
gb|BQ294541.1|BQ294541 LP20150 Lemma/palea-enriched cDNA li... 38 0.14
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 38 0.14
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 38 0.14
>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 5', mRNA sequence
Length = 604
Score = 226 bits (114), Expect = 3e-058
Identities = 210/242 (86%)
Strand = Plus / Minus
Query: 9 gctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttcaatg 68
||||||||||| |||||||| || || ||| |||| |||||||| ||||||| || |||
Sbjct: 353 gctcctcggtacgactgcccgaagatctcaaacacgataagcaagatcatcaactcgatg 294
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| || |||||||| ||||| |||| ||||| ||||| || |||||||||||||||
Sbjct: 293 cccttgacgaaatggctccgcgagtacagccgatagttctcggcgaacttggcatggaac 234
Query: 129 accacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccg 188
||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 233 accacgaatccacgtccagtagctctatactcagctcctccatgtagcagcgtctttccg 174
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| ||||| || || |||||||||||||| || ||||||||||| ||||||
Sbjct: 173 tagtagtgagtcttggttccgagggagaatgtgaagaagacggatgctaactgaagctgc 114
Query: 249 at 250
||
Sbjct: 113 at 112
>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 5', mRNA sequence
Length = 614
Score = 226 bits (114), Expect = 3e-058
Identities = 210/242 (86%)
Strand = Plus / Minus
Query: 9 gctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttcaatg 68
||||||||||| |||||||| || || ||| |||| |||||||| ||||||| || |||
Sbjct: 364 gctcctcggtacgactgcccgaagatctcaaacacgataagcaagatcatcaactcgatg 305
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| || |||||||| ||||| |||| ||||| ||||| || |||||||||||||||
Sbjct: 304 cccttgacgaaatggctccgcgagtacagccgatagttctcggcgaacttggcatggaac 245
Query: 129 accacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccg 188
||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 244 accacgaatccacgtccagtagctctatactcagctcctccatgtagcagcgtctttccg 185
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| ||||| || || |||||||||||||| || ||||||||||| ||||||
Sbjct: 184 tagtagtgagtcttggttccgagggagaatgtgaagaagacggatgctaactgaagctgc 125
Query: 249 at 250
||
Sbjct: 124 at 123
>gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_J24 5', mRNA sequence
Length = 573
Score = 226 bits (114), Expect = 3e-058
Identities = 210/242 (86%)
Strand = Plus / Minus
Query: 9 gctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttcaatg 68
||||||||||| |||||||| || || ||| |||| |||||||| ||||||| || |||
Sbjct: 491 gctcctcggtacgactgcccgaagatctcaaacacgataagcaagatcatcaactcgatg 432
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| || |||||||| ||||| |||| ||||| ||||| || |||||||||||||||
Sbjct: 431 cccttgacgaaatggctccgcgagtacagccgatagttctcggcgaacttggcatggaac 372
Query: 129 accacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccg 188
||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 371 accacgaatccacgtccagtagctctatactcagctcctccatgtagcagcgtctttccg 312
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| ||||| || || |||||||||||||| || ||||||||||| ||||||
Sbjct: 311 tagtagtgagtcttggttccgagggagaatgtgaagaagacggatgctaactgaagctgc 252
Query: 249 at 250
||
Sbjct: 251 at 250
>gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012I18f, mRNA sequence
Length = 762
Score = 202 bits (102), Expect = 4e-051
Identities = 207/242 (85%)
Strand = Plus / Minus
Query: 9 gctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttcaatg 68
||||||||||| |||||||| || || ||| |||| |||||||| ||||||| || |||
Sbjct: 247 gctcctcggtacgactgcccgaagatctcaaacacgataagcaagatcatcaactcgatg 188
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| || |||||||| ||||| |||| ||||| ||||| || |||||||||||||||
Sbjct: 187 cccttgacgaaatggctccgcgagtacagccgatagttctcggcgaacttggcatggaac 128
Query: 129 accacaaatccacgccctgtagctctatattcagctcctccatgtagcagcgtggttccg 188
||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 127 accacgaatccacgtccagtagctctatactcagctcctccatgtagcagcgtctttccg 68
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
|| ||||||| ||||| || || ||||||||||| || || ||||||||||| ||||||
Sbjct: 67 taccagtgagtcttggttccgagggagaatgtgaacaagacggatgctaactgaagctgc 8
Query: 249 at 250
||
Sbjct: 7 at 6
>gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025E14f, mRNA sequence
Length = 725
Score = 127 bits (64), Expect = 2e-028
Identities = 142/168 (84%)
Strand = Plus / Minus
Query: 9 gctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttcaatg 68
||||||||||| ||||||| || || ||| |||| |||||||| ||||||| || |||
Sbjct: 168 gctcctcggtacgactgccggaagatctcaaacacgataagcaagatcatcaactcgatg 109
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| || |||||||| ||||| |||| ||||| ||||| || |||||||||||||||
Sbjct: 108 cccttgacgaaatggctccgcgagtacagccgatagttctcggcgaacttggcatggaac 49
Query: 129 accacaaatccacgccctgtagctctatattcagctcctccatgtagc 176
||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct: 48 cccaggaatccacgtccagtagctctatactcagctcctccatgtagc 1
>gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 5', mRNA sequence
Length = 582
Score = 127 bits (64), Expect = 2e-028
Identities = 94/104 (90%)
Strand = Plus / Minus
Query: 147 gtagctctatattcagctcctccatgtagcagcgtggttccgtagtagtgagttttggtc 206
||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 578 gtagctctatactcagctcctccatgtagcagcgtctttccgtagtagtgagtcttggtt 519
Query: 207 ccaagagagaatgtgaagaacacagatgctaactggagctgcat 250
|| || |||||||||||||| || ||||||||||| ||||||||
Sbjct: 518 ccgagggagaatgtgaagaagacggatgctaactgaagctgcat 475
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 5', mRNA sequence
Length = 589
Score = 125 bits (63), Expect = 8e-028
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 148 tagctctatattcagctcctccatgtagcagcgtggttccgtagtagtgagttttggtcc 207
|||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct: 589 tagctctatactcagctcctccatgtagcagcgtctttccgtagtagtgagtcttggttc 530
Query: 208 caagagagaatgtgaagaacacagatgctaactggagctgcat 250
| || |||||||||||||| || ||||||||||| ||||||||
Sbjct: 529 cgagggagaatgtgaagaagacggatgctaactgaagctgcat 487
>gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B15
5-PRIME, mRNA sequence
Length = 654
Score = 69.9 bits (35), Expect = 4e-011
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 6 atagctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttca 65
|||||||||| ||| | ||| || || ||||||||||| | ||||| ||||||||| |||
Sbjct: 105 atagctcctctgtacgtctgtccgaaaatttcatacacgacaagcagaatcatcagctca 46
Query: 66 atgcccttcacaaaatggcttcgcgaataca 96
|| |||||||| |||||||| || |||||||
Sbjct: 45 atacccttcacgaaatggctgcgagaataca 15
>gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. vulgare cDNA clone HA25P01
5-PRIME, mRNA sequence
Length = 300
Score = 61.9 bits (31), Expect = 1e-008
Identities = 121/151 (80%)
Strand = Plus / Minus
Query: 100 gataattctcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatatt 159
||||||| ||||||||||| || ||| |||| ||||||||||| || |||| ||| ||||
Sbjct: 282 gataattatcagcaaacttcgcgtggtacacaacaaatccacggcccgtaggtctgtatt 223
Query: 160 cagctcctccatgtagcagcgtggttccgtagtagtgagttttggtcccaagagagaatg 219
||| || ||||| || | || || |||||||| |||||||| ||||| ||||
Sbjct: 222 tagcgccaccatgcagtattgttcgcccatagtagtgtgttttggtgccaagctgaaatg 163
Query: 220 tgaagaacacagatgctaactggagctgcat 250
||||||||||||| || ||||| ||||||||
Sbjct: 162 tgaagaacacagaggccaactgaagctgcat 132
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 54.0 bits (27), Expect = 2e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaactt 118
||||||||||||||||| ||||| | || |||||||||||||||||
Sbjct: 642 ttcacaaaatggcttcgggaataaagacggtaattctcagcaaactt 596
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 54.0 bits (27), Expect = 2e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaactt 118
||||||||||||||||| ||||| | || |||||||||||||||||
Sbjct: 320 ttcacaaaatggcttcgggaataaagacggtaattctcagcaaactt 274
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 54.0 bits (27), Expect = 2e-006
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||||
Sbjct: 498 aagtacctgcccgggcggccgctcgaa 524
>gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D22
5-PRIME, mRNA sequence
Length = 478
Score = 54.0 bits (27), Expect = 2e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaactt 118
||||||||||||||||| ||||| | || |||||||||||||||||
Sbjct: 163 ttcacaaaatggcttcgggaataaagacggtaattctcagcaaactt 117
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 54.0 bits (27), Expect = 2e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaactt 118
||||||||||||||||| ||||| | || |||||||||||||||||
Sbjct: 4984 ttcacaaaatggcttcgggaataaagacggtaattctcagcaaactt 4938
>gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 5', mRNA sequence
Length = 537
Score = 52.0 bits (26), Expect = 1e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 213 gagaatgtgaagaacacagatgctaactggagctgcat 250
|||||||||||||| || ||||||||||| ||||||||
Sbjct: 535 gagaatgtgaagaagacggatgctaactgaagctgcat 498
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 52.0 bits (26), Expect = 1e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcgaa 277
||||||||||||||||||||||||||
Sbjct: 413 agtacctgcccgggcggccgctcgaa 438
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 50.1 bits (25), Expect = 4e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 341 gtacctgcccgggcggccgctcgaa 365
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 4e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgctcgaa 5
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 4e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcgaa 265
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 50.1 bits (25), Expect = 4e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgctcgaa 286
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 50.1 bits (25), Expect = 4e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 50.1 bits (25), Expect = 4e-005
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgctcgaa 79
>gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57M12
5-PRIME, mRNA sequence
Length = 384
Score = 50.1 bits (25), Expect = 4e-005
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 9 gctcctcggtatgactgcccaaatatttcatacacaataagcaaaatcatcagttcaatg 68
||||||||||| |||||||| || || ||| |||| |||||||| ||||||| || |||
Sbjct: 68 gctcctcggtacgactgcccgaagatctcaaacacgataagcaagatcatcaactcgatg 9
Query: 69 ccctt 73
|||||
Sbjct: 8 ccctt 4
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BQ294526.1|BQ294526 LP10283 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-283,
mRNA sequence
Length = 294
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 220 acctgcccgggcggccgctcgaa 242
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgct 273
|||||||||||||||||||||||
Sbjct: 332 aagtacctgcccgggcggccgct 354
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 100 acctgcccgggcggccgctcgaa 78
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 135 acctgcccgggcggccgctcgaa 113
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BQ758127.1|BQ758127 EBma01_SQ002_L08_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_L08 5', mRNA sequence
Length = 202
Score = 46.1 bits (23), Expect = 6e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgctcgaa 79
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 44.1 bits (22), Expect = 0.002
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgc 272
||||||||||||||||||||||
Sbjct: 269 aagtacctgcccgggcggccgc 290
Score = 40.1 bits (20), Expect = 0.036
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgc 272
||||||||||||||||||||
Sbjct: 302 gtacctgcccgggcggccgc 283
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 44.1 bits (22), Expect = 0.002
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgc 272
||||||||||||||||||||||
Sbjct: 326 aagtacctgcccgggcggccgc 347
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
Length = 1285
Score = 44.1 bits (22), Expect = 0.002
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcga 276
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.036
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgc 272
||||||||||||||||||||
Sbjct: 273 gtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.036
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgc 272
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.036
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgc 272
||||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccgc 323
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 254 tacctgcccgggcggccgc 272
|||||||||||||||||||
Sbjct: 312 tacctgcccgggcggccgc 330
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccg 271
|||||||||||||||||||
Sbjct: 194 gtacctgcccgggcggccg 212
>gb|BQ294541.1|BQ294541 LP20150 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-150
similar to H.vulgare Bsi1 gene for putative protease
inhibitor, Accession No. Z48729, mRNA sequence
Length = 412
Score = 38.2 bits (19), Expect = 0.14
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||| ||||||
Sbjct: 338 acctgcccgggcggccactcgaa 360
>gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J04 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgct 273
|||||||||||||||||||
Sbjct: 101 acctgcccgggcggccgct 83
>gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L03 5', mRNA sequence
Length = 413
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgct 273
|||||||||||||||||||
Sbjct: 121 acctgcccgggcggccgct 103
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,834
Number of Sequences: 312970
Number of extensions: 24834
Number of successful extensions: 8207
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8153
Number of HSP's gapped (non-prelim): 54
length of query: 277
length of database: 175,134,539
effective HSP length: 18
effective length of query: 259
effective length of database: 169,501,079
effective search space: 43900779461
effective search space used: 43900779461
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)