BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK13d03.yg.3.1
(2611 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydro... 1187 0.0
gb|CK125399.1|CK125399 BES1824107o09 BES1824 Hordeum vulgar... 583 e-164
gb|AL509036.1|AL509036 AL509036 Hordeum vulgare Barke devel... 488 e-136
gb|BQ460323.1|BQ460323 HA06J20r HA Hordeum vulgare subsp. v... 476 e-132
gb|BU976238.1|BU976238 HA03G04r HA Hordeum vulgare subsp. v... 472 e-131
gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA li... 450 e-124
gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA li... 444 e-123
gb|AL505489.1|AL505489 AL505489 Hordeum vulgare Barke roots... 440 e-121
gb|BG366042.2|BG366042 HVSMEi0004P02f Hordeum vulgare 20 DA... 440 e-121
gb|AV833446.1|AV833446 AV833446 K. Sato unpublished cDNA li... 438 e-121
gb|BQ766906.1|BQ766906 EBro08_SQ007_O10_R root, 3 week, dro... 436 e-120
gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA li... 434 e-120
gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA li... 426 e-117
gb|BQ459096.1|BQ459096 HA02F14r HA Hordeum vulgare subsp. v... 422 e-116
gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA li... 420 e-115
gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA li... 420 e-115
gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedl... 418 e-115
gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA li... 410 e-113
gb|BF258158.2|BF258158 HVSMEf0014P07f Hordeum vulgare seedl... 404 e-111
gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. v... 400 e-110
gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, ... 400 e-110
gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. v... 400 e-110
gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA li... 400 e-110
gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. v... 400 e-110
gb|BU978383.1|BU978383 HA13B04r HA Hordeum vulgare subsp. v... 398 e-109
gb|BM098018.2|BM098018 EBpi03_SQ002_F03_R pistil, 4 DPA, no... 392 e-107
gb|CA007641.1|CA007641 HU08J08r HU Hordeum vulgare subsp. v... 385 e-105
gb|BQ465777.1|BQ465777 HU04K15r HU Hordeum vulgare subsp. v... 383 e-104
gb|BG366852.1|BG366852 HVSMEi0008K10f Hordeum vulgare 20 DA... 361 8e-098
gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. v... 361 8e-098
gb|BQ458498.1|BQ458498 HA05A21r HA Hordeum vulgare subsp. v... 357 1e-096
gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. v... 343 2e-092
gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. v... 339 3e-091
gb|BF255596.2|BF255596 HVSMEf0007E15f Hordeum vulgare seedl... 331 7e-089
gb|BQ468024.1|BQ468024 HR01L02r HR Hordeum vulgare subsp. v... 319 3e-085
gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots... 315 4e-084
gb|AL503553.1|AL503553 AL503553 Hordeum vulgare Barke roots... 315 4e-084
gb|BM374213.2|BM374213 EBma03_SQ003_P16_R maternal, 8 DPA, ... 315 4e-084
gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke devel... 309 3e-082
gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no... 309 3e-082
gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. v... 309 3e-082
gb|AL507457.1|AL507457 AL507457 Hordeum vulgare Barke devel... 301 6e-080
gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. v... 299 2e-079
gb|BI956426.1|BI956426 HVSMEn0003E13f Hordeum vulgare rachi... 295 4e-078
gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, n... 291 6e-077
gb|BU977300.1|BU977300 HA11D01r HA Hordeum vulgare subsp. v... 291 6e-077
gb|CX662599.1|CX662599 EST 422 Expressed sequences from Bar... 291 6e-077
gb|BU997026.1|BU997026 HI06K15r HI Hordeum vulgare subsp. v... 270 2e-070
gb|CA027301.1|CA027301 HZ58I10r HZ Hordeum vulgare subsp. v... 270 2e-070
gb|BQ765660.1|BQ765660 EBro03_SQ007_F19_R root, 3 week, wat... 266 3e-069
gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. v... 254 1e-065
gb|AV925468.1|AV925468 AV925468 K. Sato unpublished cDNA li... 252 5e-065
gb|AL507325.1|AL507325 AL507325 Hordeum vulgare Barke devel... 240 2e-061
gb|AL504655.1|AL504655 AL504655 Hordeum vulgare Barke roots... 234 1e-059
gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. v... 230 2e-058
gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. v... 230 2e-058
gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. v... 230 2e-058
gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan... 230 2e-058
gb|BF257182.2|BF257182 HVSMEf0012B20f Hordeum vulgare seedl... 228 7e-058
gb|CA000004.1|CA000004 HS16F17u HS Hordeum vulgare subsp. v... 228 7e-058
gb|AL502558.1|AL502558 AL502558 Hordeum vulgare Barke roots... 224 1e-056
gb|BQ468807.1|BQ468807 HM02G11r HM Hordeum vulgare subsp. v... 224 1e-056
gb|BU980298.1|BU980298 HA20E07r HA Hordeum vulgare subsp. v... 224 1e-056
gb|CB881387.1|CB881387 HM09K13w HM Hordeum vulgare subsp. v... 224 1e-056
gb|BQ663194.1|BQ663194 HU01E02w HU Hordeum vulgare subsp. v... 216 3e-054
gb|BQ660173.1|BQ660173 HI01E18w HI Hordeum vulgare subsp. v... 214 1e-053
gb|AL501952.1|AL501952 AL501952 Hordeum vulgare Barke roots... 210 2e-052
gb|CB858709.1|CB858709 HI08B05w HI Hordeum vulgare subsp. v... 208 7e-052
gb|BQ660249.1|BQ660249 HI01K09w HI Hordeum vulgare subsp. v... 202 4e-050
gb|BQ661201.1|BQ661201 HM02G11u HM Hordeum vulgare subsp. v... 200 2e-049
gb|AL511981.1|AL511981 AL511981 Hordeum vulgare Barke devel... 196 3e-048
gb|BU985657.1|BU985657 HF08D21r HF Hordeum vulgare subsp. v... 194 1e-047
gb|BI947544.1|BI947544 HVSMEl0005N11f Hordeum vulgare spike... 188 6e-046
gb|BU995937.1|BU995937 HM11N11r HM Hordeum vulgare subsp. v... 186 3e-045
gb|CB882092.1|CB882092 HM11N11w HM Hordeum vulgare subsp. v... 186 3e-045
gb|BM374115.1|BM374115 EBma03_SQ003_L03_R maternal, 8 DPA, ... 184 1e-044
gb|CA017215.1|CA017215 HV14C18u HV Hordeum vulgare subsp. v... 184 1e-044
gb|BF628278.1|BF628278 HVSMEb0003J18f Hordeum vulgare seedl... 182 4e-044
gb|BU977331.1|BU977331 HA11D20r HA Hordeum vulgare subsp. v... 180 2e-043
gb|AV914506.1|AV914506 AV914506 K. Sato unpublished cDNA li... 178 6e-043
gb|BF257026.2|BF257026 HVSMEf0011K13f Hordeum vulgare seedl... 167 2e-039
gb|BQ761635.1|BQ761635 EBem10_SQ001_J09_R embryo, 2 Day ger... 167 2e-039
gb|CA032277.1|CA032277 HX12I21r HX Hordeum vulgare subsp. v... 167 2e-039
gb|CA028780.1|CA028780 HZ63D19r HZ Hordeum vulgare subsp. v... 161 1e-037
gb|CA021153.1|CA021153 HZ39E06r HZ Hordeum vulgare subsp. v... 155 9e-036
gb|AL512140.1|AL512140 AL512140 Hordeum vulgare Barke devel... 141 1e-031
gb|BM096544.2|BM096544 EBma03_SQ001_O18_R maternal, 8 DPA, ... 123 3e-026
gb|BE411093.1|BE411093 ISC002.C07F990406 ITEC ISC Barley Le... 117 2e-024
gb|BI957799.1|BI957799 HVSMEn0011E04f Hordeum vulgare rachi... 117 2e-024
gb|CA032659.1|CA032659 HX13N01r HX Hordeum vulgare subsp. v... 117 2e-024
gb|AL509470.1|AL509470 AL509470 Hordeum vulgare Barke devel... 103 3e-020
gb|BF254732.1|BF254732 HVSMEf0004N21f Hordeum vulgare seedl... 103 3e-020
gb|CA019039.1|CA019039 HV10I20r HV Hordeum vulgare subsp. v... 90 4e-016
gb|AL508845.1|AL508845 AL508845 Hordeum vulgare Barke devel... 86 7e-015
gb|BG418718.1|BG418718 HVSMEk0024C10f Hordeum vulgare testa... 86 7e-015
gb|BQ462564.1|BQ462564 HI01E18T HI Hordeum vulgare subsp. v... 86 7e-015
gb|BQ462668.1|BQ462668 HI01K09T HI Hordeum vulgare subsp. v... 86 7e-015
gb|BQ464740.1|BQ464740 HU01E02T HU Hordeum vulgare subsp. v... 86 7e-015
gb|CA020043.1|CA020043 HV14C18r HV Hordeum vulgare subsp. v... 86 7e-015
gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. v... 84 3e-014
gb|BU999528.1|BU999528 HI14M13r HI Hordeum vulgare subsp. v... 82 1e-013
gb|CA021252.1|CA021252 HZ39I23r HZ Hordeum vulgare subsp. v... 82 1e-013
gb|BI955317.1|BI955317 HVSMEm0022I03f Hordeum vulgare green... 78 2e-012
gb|AV917377.1|AV917377 AV917377 K. Sato unpublished cDNA li... 78 2e-012
gb|CA023517.1|CA023517 HZ46H20r HZ Hordeum vulgare subsp. v... 76 7e-012
gb|BI951410.1|BI951410 HVSMEl0025N13f Hordeum vulgare spike... 72 1e-010
gb|BI956324.1|BI956324 HVSMEn0002G07f Hordeum vulgare rachi... 72 1e-010
gb|BQ469930.1|BQ469930 HX01E12T HX Hordeum vulgare subsp. v... 72 1e-010
gb|BM100567.2|BM100567 EBma01_SQ005_J17_R maternal, 4 DPA, ... 72 1e-010
gb|BU996476.1|BU996476 HM13L18r HM Hordeum vulgare subsp. v... 72 1e-010
gb|CA022582.1|CA022582 HZ43L07r HZ Hordeum vulgare subsp. v... 72 1e-010
gb|CA026644.1|CA026644 HZ56I06r HZ Hordeum vulgare subsp. v... 72 1e-010
gb|BG416639.1|BG416639 HVSMEk0013O04f Hordeum vulgare testa... 70 4e-010
gb|AV833400.1|AV833400 AV833400 K. Sato unpublished cDNA li... 68 2e-009
gb|BI958825.1|BI958825 HVSMEn0016M12f Hordeum vulgare rachi... 64 2e-008
gb|CA019151.1|CA019151 HV10P13r HV Hordeum vulgare subsp. v... 64 2e-008
gb|BQ468423.1|BQ468423 HM01D10T HM Hordeum vulgare subsp. v... 62 1e-007
gb|BU995244.1|BU995244 HM09K13r HM Hordeum vulgare subsp. v... 56 6e-006
gb|BM098044.2|BM098044 EBpi03_SQ002_G06_R pistil, 4 DPA, no... 54 2e-005
gb|BU996833.1|BU996833 HM14O21r HM Hordeum vulgare subsp. v... 54 2e-005
gb|BJ463220.1|BJ463220 BJ463220 K. Sato unpublished cDNA li... 44 0.023
gb|L43939.1|BLYQ Hordeum vulgare (clone ABC254) STS mRNA, s... 44 0.023
gb|CB882302.1|CB882302 HL01H18w HL Hordeum vulgare subsp. v... 40 0.36
>gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydrolase, isoenzyme ExoII, mRNA,
complete cds
Length = 2105
Score = 1187 bits (599), Expect = 0.0
Identities = 1535/1844 (83%), Gaps = 6/1844 (0%)
Strand = Plus / Plus
Query: 419 ctcatgttctgcctgctagcgctggggagagcggagtacctcaagtacaaggacccaaag 478
|||||||||||| || ||| |||| || ||||| || |||||||||||||| || |||
Sbjct: 59 ctcatgttctgcttggcggcgttgggaagcgcggattatctcaagtacaaggatccgaag 118
Query: 479 cagcccgtcgctgttcgcatcaaggacctgctgggtcggatgactctcgccgaaaagatc 538
||||| | | |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 119 cagcctcttggcgttcgcatcaaggatctgcttggtcggatgactctcgctgaaaagata 178
Query: 539 ggccagatgacgcagatcgagagggaaaacgccacggccgacgcgctggccaaatacttc 598
||||||||||| |||||||||||||| || |||||||| || || || |||| ||||||
Sbjct: 179 ggccagatgacccagatcgagagggagaatgccacggcagaggccatgtccaagtacttc 238
Query: 599 ataggtagcgtgctgagcggcggaggcagcgtgcctgctcctcaggcgtctgctcaggct 658
||||||||||| ||||| || |||||||| |||||| ||||||| || || ||| ||||
Sbjct: 239 ataggtagcgtactgagtggtggaggcagtgtgccttctcctcaagcatccgctgcggct 298
Query: 659 tgggccgccatggtgaccgagatgcagaagggcgctctttctacgcgtctgggtataccg 718
||| | ||||||| || ||||| |||||||| |||||||| || || || || |||
Sbjct: 299 tggcagtcgatggtgaatgaaatgcaaaagggcgccctttctacccgcctaggcattccg 358
Query: 719 atcatctacggtatcgatgcagtgcatgggcacaacaacgtctacaaagctactattttc 778
|| ||||||||||| ||||| ||||| || ||||||||||| ||||||||||| || |||
Sbjct: 359 atgatctacggtattgatgctgtgcacggtcacaacaacgtgtacaaagctaccatcttc 418
Query: 779 cctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaa 838
|| || || || || || || ||||||||||||||| | || ||||| || ||||||
Sbjct: 419 ccacataatgttggcctcggtgctaccagggaccctatgttggtaaagaggataggagaa 478
Query: 839 gcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgtatagcg 898
||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |||
Sbjct: 479 gcaactgctcttgaagttagagcaacaggaattccttacgcttttgctccgtgtattgcg 538
Query: 899 gtctgtagagatccaagatggggacgctgctatgagagctacagtgaggatccaaaggtt 958
|| |||||||| ||||||||||||||||||||||| |||||||| || || |||||||||
Sbjct: 539 gtgtgtagagacccaagatggggacgctgctatgaaagctacagcgaagacccaaaggtt 598
Query: 959 gtccagtcactgacttcactcatctctggcctgcaaggtgacgctcctgcggattccgcg 1018
||||||||| |||| ||||||||||||| ||||||||||||| ||| || | ||| | |
Sbjct: 599 gtccagtcaatgaccacactcatctctggtctgcaaggtgacgttccggctggttctgag 658
Query: 1019 ggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagcactatgtcggt 1078
|||||||| || ||||| |||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct: 659 ggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagcactatgttggt 718
Query: 1079 gatggtggaacgcataacggaatcaacgagaacaacacgatcatcgacacacacgggctg 1138
|||||||| ||| || || |||||||||||| | || ||||| ||| | || ||||||
Sbjct: 719 gatggtggtacgtttatggggatcaacgagaacgatacaatcattgacgcccatgggctg 778
Query: 1139 ctgagcatccatatgcctccttactacaactctatcatccgaggtgtctccacggtcatg 1198
||| |||||||||||| |||| ||||| ||||||||| ||||||||||||| || |||
Sbjct: 779 atgactatccatatgcctgcttattacaattctatcatcagaggtgtctccactgttatg 838
Query: 1199 gtctcctactccagctggaacggagtgaagatgcacgcgaaccatttcctagtcacggat 1258
||| ||||| ||||||||||| ||| |||||||| ||||||||||| ||||| |||
Sbjct: 839 acctcgtactctagctggaacggcaagaaaatgcacgccaaccatttccttgtcactgat 898
Query: 1259 tttctcaagaacaagctcaagtttaggggttttgtgatttccgactgggagggcattgat 1318
||||| |||||||||||||| ||| ||||||| |||||||| |||||| | |||||||||
Sbjct: 899 tttctgaagaacaagctcaaatttcggggtttcgtgatttcagactggcaaggcattgat 958
Query: 1319 cggatcactactcctcctcacgccaactactcttactcaattgaggctggtgttggtgct 1378
||||| |||| ||||| || ||||| ||||| ||| |||||||||| ||||||||
Sbjct: 959 cggattactagccctccaggcgtgaactattcttattcagttgaggctggagttggtgcc 1018
Query: 1379 ggaattgacatgatcatggttccattcaggtacacagaattcatcgacgacctgacgaca 1438
|| |||||||||||||||||||| || |||||||||||||| || || |||||
Sbjct: 1019 ggtattgacatgatcatggttccttttgcctacacagaattcattgatgatctgacatac 1078
Query: 1439 caagttcagaacaaggtcatccccatgagcagaatcgacgacgccgtctacaggatcctt 1498
|||||| ||||||| |||||||||||||||||||| |||| || ||||||||||| ||
Sbjct: 1079 caagttaagaacaacatcatccccatgagcagaatcaacgatgctgtctacaggattctc 1138
Query: 1499 cgtgtcaagttcaccatgggcctgttcgagaacccttaccccgactctagcctcgccggc 1558
| || |||||||||||||| || || |||| ||| || | ||| | ||||||| ||
Sbjct: 1139 agggtgaagttcaccatgggtctatttgagagcccctatgctgacccaagcctcgttggt 1198
Query: 1559 gagctcgggaagcaagaacaccgggaactggcgcgcgaagccgtcaggaaatccctggtt 1618
|| ||||||||||| |||||||| || || || || || ||||||||||| || ||||
Sbjct: 1199 gaactcgggaagcaggaacaccgtgatcttgctcgtgaggccgtcaggaagtcattggtg 1258
Query: 1619 ctcctgaagaacggcaagtcctcctacgctccgttgctgcccctcccgaagaaggccggc 1678
| ||||| || || || || ||| | |||| ||| |||| ||||| |||||||||||
Sbjct: 1259 ttgctgaaaaatggaaaatctgcctccactccattgttgcctctcccaaagaaggccggt 1318
Query: 1679 aagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacg 1738
|||||||| ||||| || ||||||||| ||||| |||||||||||||||| || |||||
Sbjct: 1319 aagatcctcgtcgctggaagccacgccgacgacttgggcaaccagtgcggaggatggacc 1378
Query: 1739 atcacgtggcaaggaagcagcggca---acactactgccggcacgacgatcctctccggg 1795
||||| ||||||||| | ||||| ||| |||||||| ||||||||||| || | |
Sbjct: 1379 atcacatggcaaggacagaccggcaacgacaaaactgccgggacgacgatcctttcggcg 1438
Query: 1796 atcgaggccaccgtggaccccagcacgcaggtggtgtactcggagagcccggacagcggc 1855
||| || ||||||| |||||||||||| ||||||| | ||| |||| || ||||||| |
Sbjct: 1439 atcaagtccaccgtcgaccccagcacggaggtggtcttctcagagaatcctgacagcgcc 1498
Query: 1856 g-tgctggc--cgacaagtacgactacgcgatcgtggtggtcggggagccgccatacgcg 1912
| | || | || ||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 1499 gccgttgacagcggcaagtacgactacgccatcgtggtggtcggcgagccaccgtacgct 1558
Query: 1913 gagacgttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcgtgatccag 1972
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct: 1559 gagacgttcggcgacaacctgaacctgacgatccctgcgcccggcccctcggtgatccag 1618
Query: 1973 tcggtgtgcggggccgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtg 2032
|||||| | || || |||||||||||| |||||||||||||||||||||||||||
Sbjct: 1619 aacgtgtgcaagagcgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtg 1678
Query: 2033 gagccgtacctgggcgacatggacgcgctggtggcggcgtggctgccagggtcggagggg 2092
||||||||| | ||| |||||||||| | || || ||||||||||| || ||||||||
Sbjct: 1679 gagccgtacatcagcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggc 1738
Query: 2093 cagggcgtggcggacgtgctgttcggcgactacgggttcacggggaagctgccgcggacg 2152
||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 1739 cagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcggacg 1798
Query: 2153 tggttcaagtcggtggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctc 2212
||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 1799 tggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccgctc 1858
Query: 2213 ttcccgttcggcttcggactcaccaccaagggcacgaagtgagt 2256
||||| ||||| ||||| ||||||||| ||| || |||||||||
Sbjct: 1859 ttccccttcgggttcggcctcaccaccgaggccaagaagtgagt 1902
>gb|CK125399.1|CK125399 BES1824107o09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010O097 5-PRIME, mRNA sequence
Length = 920
Score = 583 bits (294), Expect = e-164
Identities = 730/873 (83%), Gaps = 2/873 (0%)
Strand = Plus / Plus
Query: 458 ctcaagtacaaggacccaaagcagcccgtcgctgttcgcatcaaggacctgctgggtcgg 517
|||||||||||||| || |||||||| | | |||||||||||||| ||||| ||||||
Sbjct: 22 ctcaagtacaaggatccgaagcagcctcttggcgttcgcatcaaggatctgcttggtcgg 81
Query: 518 atgactctcgccgaaaagatcggccagatgacgcagatcgagagggaaaacgccacggcc 577
||||||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 82 atgactctcgctgaaaagataggccagatgacccagatcgagagggagaatgccacggca 141
Query: 578 gacgcgctggccaaatacttcataggtagcgtgctgagcggcggaggcagcgtgcctgct 637
|| || || |||| ||||||||||||||||| ||||| || |||||||| |||||| ||
Sbjct: 142 gaggccatgtccaagtacttcataggtagcgtactgagtggtggaggcagtgtgccttct 201
Query: 638 cctcaggcgtctgctcaggcttgggccgccatggtgaccgagatgcagaagggcgctctt 697
||||| || || ||| ||||||| | ||||||| || ||||| |||||||| |||
Sbjct: 202 cctcaagcatccgctgcggcttggcagtcgatggtgaatgaaatgcaaaagggcgccctt 261
Query: 698 tctacgcgtctgggtataccgatcatctacggtatcgatgcagtgcatgggcacaacaac 757
||||| || || || || ||||| ||||||||||| ||||| ||||| || |||||||||
Sbjct: 262 tctacccgcctaggcattccgatgatctacggtattgatgctgtgcacggtcacaacaac 321
Query: 758 gtctacaaagctactattttccctcacaacgtcgggcttggagctaccagggaccctgac 817
|| ||||||||||| || ||||| || || || || || || |||||||||||||||
Sbjct: 322 gtgtacaaagctaccatcttcccacataatgttggcctcggtgctaccagggaccctatg 381
Query: 818 ctcgttaagagaattggagaagcaactgctcttgaagttagagctactggaattccttac 877
| || ||||| || ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 382 ttggtaaagaggataggagaagcaactgctcttgaagttagagcaacaggaattccttac 441
Query: 878 gcctttgctccctgtatagcggtctgtagagatccaagatggggacgctgctatgagagc 937
|| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 442 gcttttgctccgtgtattgcggtgtgtagagacccaagatggggacgctgctatgaaagc 501
Query: 938 tacagtgaggatccaaaggttgtccagtcactgacttcactcatctctggcctgcaaggt 997
||||| || || |||||||||||||||||| |||| ||||||||||||| |||||||||
Sbjct: 502 tacagcgaagacccaaaggttgtccagtcaatgaccacactcatctctggtctgcaaggt 561
Query: 998 gacgctcctgcggattccgcgggaaggccgtatgttgggggaagtaagaaggtcgctgcg 1057
|||| ||| || | ||| | ||||||||| || ||||| |||||||||||||| |||||
Sbjct: 562 gacgttccggctggttctgagggaaggccatacgttggtggaagtaagaaggttgctgca 621
Query: 1058 tgcgcgaagcactatgtcggtgatggtggaacgcataacggaatcaacgagaacaacacg 1117
||||| ||||||||||| ||||||||||| ||| || || |||||||||||| | ||
Sbjct: 622 tgcgcaaagcactatgttggtgatggtggtacgtttatggggatcaacgagaacgataca 681
Query: 1118 atcatcgacacacacgggctgctgagcatccatatgcctccttactacaactctatcatc 1177
||||| ||| | || |||||| ||| |||||||||||| |||| ||||| |||||||||
Sbjct: 682 atcattgacgcccatgggctgatgactatccatatgcctgcttattacaattctatcatc 741
Query: 1178 cgaggtgtctccacggtcatggtctcctactccagctggaacggagtgaagatgcacgcg 1237
||||||||||||| || ||| ||| ||||| ||||||||||| || ||||||||
Sbjct: 742 agaggtgtctccactgttatgacctcgtactctagctggaacggcaaaaaaatgcacgcc 801
Query: 1238 aa-ccatttcctagtcacggattttctcaagaacaagctcaagttt-aggggttttgtga 1295
|| ||||||||| ||||| |||||||| || ||||||||||| ||| ||||||| | ||
Sbjct: 802 aacccatttccttgtcactgattttctgaanaacaagctcaaatttccggggtttcggga 861
Query: 1296 tttccgactgggagggcattgatcggatcacta 1328
|||| ||||| | |||||||||||||| ||||
Sbjct: 862 tttcaaactggcaaggcattgatcggattacta 894
>gb|AL509036.1|AL509036 AL509036 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10I14V 5',
mRNA sequence
Length = 700
Score = 488 bits (246), Expect = e-136
Identities = 550/650 (84%), Gaps = 1/650 (0%)
Strand = Plus / Plus
Query: 824 aagagaattggagaagcaactgctcttgaagttagagctactggaattccttacgccttt 883
||||| || ||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct: 32 aagaggataggagaagcaactgctcttgaagttagagcaacaggaattccttacgctttt 91
Query: 884 gctccctgtatagcggtctgtagagatccaagatggggacgctgctatgagagctacagt 943
||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 92 gctccgtgtattgcggtgtgtagagacccaagatggggacgctgctatgaaagctacagc 151
Query: 944 gaggatccaaaggttgtccagtcactgacttcactcatctctggcctgcaaggtgacgct 1003
|| || |||||||||||||||||| |||| ||||||||||||| ||||||||||||| |
Sbjct: 152 gaagacccaaaggttgtccagtcaatgaccacactcatctctggtctgcaaggtgacgtt 211
Query: 1004 cctgcggattccgcgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcg 1063
|| || | ||| | ||||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 212 ccggctggttctgagggaaggccatacgttggtggaagtaagaaggttgctgcatgcgca 271
Query: 1064 aagcactatgtcggtgatggtggaacgcataacggaatcaacgagaacaacacgatcatc 1123
||||||||||| ||||||||||| ||| || || |||||||||||| | || |||||
Sbjct: 272 aagcactatgttggtgatggtggtacgtttatggggatcaacgagaacgatacaatcatt 331
Query: 1124 gacacacacgggctgctgagcatccatatgcctccttactacaactctatcatccgaggt 1183
||| | || |||||| ||| |||||||||||| |||| ||||| ||||||||| |||||
Sbjct: 332 gacgcccatgggctgatgactatccatatgcctgcttattacaattctatcatcagaggt 391
Query: 1184 gtctccacggtcatggtctcctactccagctggaacggagtgaagatgcacgcgaaccat 1243
|||||||| || ||| ||| ||||| ||||||||||| ||| |||||||| ||||||
Sbjct: 392 gtctccactgttatgacctcgtactctagctggaacggcaagaaaatgcacgccaaccat 451
Query: 1244 ttcctagtcacggattttctcaagaacaagctcaagtttaggggttttgtgatttccgac 1303
||||| ||||| |||||||| |||||||||||||| ||| ||||||| |||||||| |||
Sbjct: 452 ttccttgtcactgattttctgaagaacaagctcaaatttcggggtttcgtgatttcagac 511
Query: 1304 tgggagggcattgatcggatcactactcctcctcacgccaactactcttactcaattgag 1363
||| | |||||||||||||| |||| ||||| || ||||| ||||| ||| |||||
Sbjct: 512 tggcaaggcattgatcggattactagccctccaggcgtgaactattcttattcagttgag 571
Query: 1364 gctggtgttggtgctggaattgacatgatcatggttccattcaggtacacagaattcatc 1423
||||| |||||||| || |||||||||||||||||||| || ||||||||||||||
Sbjct: 572 gctggagttggtgccggtattgacatgatcatggttccttttgcctacacagaattcatt 631
Query: 1424 gacga-cctgacgacacaagttcagaacaaggtcatccccatgagcagaa 1472
|| || | |||| |||||| ||||||| ||||||||||||||||||
Sbjct: 632 gatgatcttgacataccaagttaagaacaacatcatccccatgagcagaa 681
>gb|BQ460323.1|BQ460323 HA06J20r HA Hordeum vulgare subsp. vulgare cDNA clone HA06J20
5-PRIME, mRNA sequence
Length = 634
Score = 476 bits (240), Expect = e-132
Identities = 528/624 (84%)
Strand = Plus / Plus
Query: 695 ctttctacgcgtctgggtataccgatcatctacggtatcgatgcagtgcatgggcacaac 754
|||||||| || || || || ||||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 11 ctttctacccgcctaggcattccgatgatctacggtattgatgctgtgcacggtcacaac 70
Query: 755 aacgtctacaaagctactattttccctcacaacgtcgggcttggagctaccagggaccct 814
||||| ||||||||||| || ||||| || || || || || || |||||||||||||||
Sbjct: 71 aacgtgtacaaagctaccatcttcccacataatgttggcctcggtgctaccagggaccct 130
Query: 815 gacctcgttaagagaattggagaagcaactgctcttgaagttagagctactggaattcct 874
| || ||||| || ||||||||||||||||||||||||||||| || |||||||||
Sbjct: 131 atgttggtaaagaggataggagaagcaactgctcttgaagttagagcaacaggaattcct 190
Query: 875 tacgcctttgctccctgtatagcggtctgtagagatccaagatggggacgctgctatgag 934
||||| |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 191 tacgcttttgctccgtgtattgcggtgtgtagagacccaagatggggacgctgctatgaa 250
Query: 935 agctacagtgaggatccaaaggttgtccagtcactgacttcactcatctctggcctgcaa 994
|||||||| || || |||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 251 agctacagcgaagacccaaaggttgtccagtcaatgaccacactcatctctggtctgcaa 310
Query: 995 ggtgacgctcctgcggattccgcgggaaggccgtatgttgggggaagtaagaaggtcgct 1054
||||||| ||| || | ||| | ||||||||| || ||||| |||||||||||||| |||
Sbjct: 311 ggtgacgttccggctggttctgagggaaggccatacgttggtggaagtaagaaggttgct 370
Query: 1055 gcgtgcgcgaagcactatgtcggtgatggtggaacgcataacggaatcaacgagaacaac 1114
|| ||||| ||||||||||| ||||||||||| ||| || || |||||||||||| |
Sbjct: 371 gcatgcgcaaagcactatgttggtgatggtggtacgtttatggggatcaacgagaacgat 430
Query: 1115 acgatcatcgacacacacgggctgctgagcatccatatgcctccttactacaactctatc 1174
|| ||||| ||| | || |||||| ||| |||||||||||| |||| ||||| ||||||
Sbjct: 431 acaatcattgacgcccatgggctgatgactatccatatgcctgcttattacaattctatc 490
Query: 1175 atccgaggtgtctccacggtcatggtctcctactccagctggaacggagtgaagatgcac 1234
||| ||||||||||||| || ||| ||| ||||| ||||||||||| ||| ||||||
Sbjct: 491 atcagaggtgtctccactgttatgacctcgtactctagctggaacggcaagaaaatgcac 550
Query: 1235 gcgaaccatttcctagtcacggattttctcaagaacaagctcaagtttaggggttttgtg 1294
|| ||||||||||| ||||| |||||||| |||||||||||||| ||| ||||||| |||
Sbjct: 551 gccaaccatttccttgtcactgattttctgaagaacaagctcaaatttcggggtttcgtg 610
Query: 1295 atttccgactgggagggcattgat 1318
||||| |||||| | |||||||||
Sbjct: 611 atttcagactggcaaggcattgat 634
>gb|BU976238.1|BU976238 HA03G04r HA Hordeum vulgare subsp. vulgare cDNA clone HA03G04
5-PRIME, mRNA sequence
Length = 641
Score = 472 bits (238), Expect = e-131
Identities = 538/638 (84%)
Strand = Plus / Plus
Query: 857 agagctactggaattccttacgcctttgctccctgtatagcggtctgtagagatccaaga 916
||||| || |||||||||||||| |||||||| ||||| ||||| |||||||| ||||||
Sbjct: 1 agagcaacaggaattccttacgcttttgctccgtgtattgcggtgtgtagagacccaaga 60
Query: 917 tggggacgctgctatgagagctacagtgaggatccaaaggttgtccagtcactgacttca 976
||||||||||||||||| |||||||| || || |||||||||||||||||| |||| ||
Sbjct: 61 tggggacgctgctatgaaagctacagcgaagacccaaaggttgtccagtcaatgaccaca 120
Query: 977 ctcatctctggcctgcaaggtgacgctcctgcggattccgcgggaaggccgtatgttggg 1036
||||||||||| ||||||||||||| ||| || | ||| | ||||||||| || |||||
Sbjct: 121 ctcatctctggtctgcaaggtgacgttccggctggttctgagggaaggccatacgttggt 180
Query: 1037 ggaagtaagaaggtcgctgcgtgcgcgaagcactatgtcggtgatggtggaacgcataac 1096
|||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||| ||
Sbjct: 181 ggaagtaagaaggttgctgcatgcgcaaagcactatgttggtgatggtggtacgtttatg 240
Query: 1097 ggaatcaacgagaacaacacgatcatcgacacacacgggctgctgagcatccatatgcct 1156
|| |||||||||||| | || ||||| ||| | || |||||| ||| ||||||||||||
Sbjct: 241 gggatcaacgagaacgatacaatcattgacgcccatgggctgatgactatccatatgcct 300
Query: 1157 ccttactacaactctatcatccgaggtgtctccacggtcatggtctcctactccagctgg 1216
|||| ||||| ||||||||| ||||||||||||| || ||| ||| ||||| ||||||
Sbjct: 301 gcttattacaattctatcatcagaggtgtctccactgttatgacctcgtactctagctgg 360
Query: 1217 aacggagtgaagatgcacgcgaaccatttcctagtcacggattttctcaagaacaagctc 1276
||||| ||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 361 aacggcaagaaaatgcacgccaaccatttccttgtcactgattttctgaagaacaagctc 420
Query: 1277 aagtttaggggttttgtgatttccgactgggagggcattgatcggatcactactcctcct 1336
|| ||| ||||||| |||||||| |||||| | |||||||||||||| |||| |||||
Sbjct: 421 aaatttcggggtttcgtgatttcagactggcaaggcattgatcggattactagccctcca 480
Query: 1337 cacgccaactactcttactcaattgaggctggtgttggtgctggaattgacatgatcatg 1396
|| ||||| ||||| ||| |||||||||| |||||||| || |||||||||||||||
Sbjct: 481 ggcgtgaactattcttattcagttgaggctggagttggtgccggtattgacatgatcatg 540
Query: 1397 gttccattcaggtacacagaattcatcgacgacctgacgacacaagttcagaacaaggtc 1456
||||| || |||||||||||||| || || ||||| |||||| ||||||| ||
Sbjct: 541 gttccttttgcctacacagaattcattgatgatctgacataccaagttaagaacaacatc 600
Query: 1457 atccccatgagcagaatcgacgacgccgtctacaggat 1494
|||||||||||||||||| |||| || |||||||||||
Sbjct: 601 atccccatgagcagaatcaacgatgctgtctacaggat 638
>gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 3', mRNA sequence
Length = 663
Score = 450 bits (227), Expect = e-124
Identities = 497/584 (85%), Gaps = 6/584 (1%)
Strand = Plus / Minus
Query: 1679 aagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacg 1738
|||||||| ||||| || |||||||| ||||| |||||||||||||||| || |||||
Sbjct: 660 aagatcctcgtcgctggaagccacgctgacgacttgggcaaccagtgcggaggatggacc 601
Query: 1739 atcacgtggcaaggaagcagcggcaac---actactgccggcacgacgatcctctccggg 1795
||||| ||||||||| | ||||||| | |||||||| ||||||||||| || | |
Sbjct: 600 atcacatggcaaggacagaccggcaacgacaaaactgccgggacgacgatcctttcggcg 541
Query: 1796 atcgaggccaccgtggaccccagcacgcaggtggtgtactcggagagcccggacagcggc 1855
||| || ||||||| |||||||||||| ||||||| | ||| |||| ||| ||||||| |
Sbjct: 540 atcaagtccaccgtcgaccccagcacggaggtggtcttctcagagaaccctgacagcgcc 481
Query: 1856 gt-gctggc--cgacaagtacgactacgcgatcgtggtggtcggggagccgccatacgcg 1912
| | || | || ||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 480 gccgttgacagcggcaagtacgactacgccatcgtggtggtcggcgagccaccgtacgct 421
Query: 1913 gagacgttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcgtgatccag 1972
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct: 420 gagacgttcggcgacaacctgaacctgacgatccctgcgcccggcccctcggtgatccag 361
Query: 1973 tcggtgtgcggggccgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtg 2032
|||||| | || || |||||||||||| |||||||||||||||||||||||||||
Sbjct: 360 aacgtgtgcaagagcgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtg 301
Query: 2033 gagccgtacctgggcgacatggacgcgctggtggcggcgtggctgccagggtcggagggg 2092
||||||||| | ||| |||||||||| | || || ||||||||||| || ||||||||
Sbjct: 300 gagccgtacatcagcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggc 241
Query: 2093 cagggcgtggcggacgtgctgttcggcgactacgggttcacggggaagctgccgcggacg 2152
||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 240 cagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcggacg 181
Query: 2153 tggttcaagtcggtggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctc 2212
||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 180 tggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccgctc 121
Query: 2213 ttcccgttcggcttcggactcaccaccaagggcacgaagtgagt 2256
||||| ||||| ||||| ||||||||| ||| || |||||||||
Sbjct: 120 ttccccttcgggttcggcctcaccaccgaggccaagaagtgagt 77
>gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6k08 3', mRNA sequence
Length = 696
Score = 444 bits (224), Expect = e-123
Identities = 503/592 (84%), Gaps = 8/592 (1%)
Strand = Plus / Minus
Query: 1673 gccggcaagatcctggtcgccggcagccacgcc-aacgacctgggcaaccagtgcggggg 1731
||||| |||||||| ||||| || |||||||| |||||| |||||||||||||||| ||
Sbjct: 696 gccggtaagatcctcgtcgctggaagccacgctgaacgacttgggcaaccagtgcggagg 637
Query: 1732 gtggacgatcacgtggcaaggaagcagcggcaac----actactgccggcacgacgatcc 1787
||||| ||||| ||||||||| | ||||||| | |||||||| ||||||||||
Sbjct: 636 atggaccatcacatggcaaggacagaccggcaacgacaaaaactgccgggacgacgatcc 577
Query: 1788 tctccgggatcgaggccaccgtggaccccagcacgcaggtggtgtactcggagagcccgg 1847
| || | |||| || ||||||| |||||||||||| ||||||| | ||| |||| ||| |
Sbjct: 576 tttcggcgatcaagtccaccgtcgaccccagcacggaggtggtcttctcagagaaccctg 517
Query: 1848 acagcggcgt-gctggc--cgacaagtacgactacgcgatcgtggtggtcggggagccgc 1904
|||||| || | || | || ||||||||||||||| |||||||||||||| ||||| |
Sbjct: 516 acagcgccgccgttgacagcggcaagtacgactacgccatcgtggtggtcggcgagccac 457
Query: 1905 catacgcggagacgttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcg 1964
| ||||| ||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct: 456 cgtacgctgagacgttcggcgacaacctgaacctgacgatccctgcgcccggcccctcgg 397
Query: 1965 tgatccagtcggtgtgcggggccgccaagtgcgtggtggtcctcatctccggcaggccgc 2024
|||||||| |||||| | || || |||||||||||| |||||||||||||||||||
Sbjct: 396 tgatccagaacgtgtgcaagagcgtcaggtgcgtggtggtgctcatctccggcaggccgc 337
Query: 2025 tggtggtggagccgtacctgggcgacatggacgcgctggtggcggcgtggctgccagggt 2084
||||||||||||||||| | ||| |||||||||| | || || ||||||||||| || |
Sbjct: 336 tggtggtggagccgtacatcagcgccatggacgcgttcgtcgccgcgtggctgcccggct 277
Query: 2085 cggaggggcagggcgtggcggacgtgctgttcggcgactacgggttcacggggaagctgc 2144
||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct: 276 cggagggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctgg 217
Query: 2145 cgcggacgtggttcaagtcggtggaccagctgcccatgaacgtgggcgacgcgcactacg 2204
||||||||||||||||||||| |||||||||||| |||||||| |||||| ||||||||
Sbjct: 216 cgcggacgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacg 157
Query: 2205 acccgctcttcccgttcggcttcggactcaccaccaagggcacgaagtgagt 2256
||||||||||||| ||||| ||||| ||||||||| ||| || |||||||||
Sbjct: 156 acccgctcttccccttcgggttcggcctcaccaccgaggccaagaagtgagt 105
>gb|AL505489.1|AL505489 AL505489 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08K03V 5', mRNA sequence
Length = 690
Score = 440 bits (222), Expect = e-121
Identities = 549/657 (83%), Gaps = 1/657 (0%)
Strand = Plus / Plus
Query: 593 tacttcataggtagcgtgctgagcggcggaggcagcgtgcctgctcctcaggcgtctgct 652
||||||||||||||||| ||||| || |||||||| |||||| ||||||| || || |||
Sbjct: 13 tacttcataggtagcgtactgagtggtggaggcagtgtgccttctcctcaagcatccgct 72
Query: 653 caggcttgggccgccatggtgaccgagatgcagaagggcgctctttctacgcgtctgggt 712
||||||| | ||||||| || ||||| |||||||| |||||||| || || ||
Sbjct: 73 gcggcttggcagtcgatggtgaatgaaatgcaaaagggcgccctttctacccgcctaggc 132
Query: 713 ataccgatcatctacggtatcgatgcagtgcatgggcacaacaacgtctacaaagctact 772
|| ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 133 attccgatgatctacggtattgatgctgtgcacggncacaacaacgtgtacaaagctacc 192
Query: 773 attttccctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaatt 832
|| ||||| || || || || || || ||||||||||||||| | || ||||| ||
Sbjct: 193 atcttcccacataatgttggcctcggtgctaccagggaccctatgttggtaaagaggata 252
Query: 833 ggagaagcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgt 892
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 253 ggagaagcaactgctcttgaagttagagcaacaggaattccttacgcttttgctccgtgt 312
Query: 893 atagcggtctgtagagatccaagatggggacgctgctatgagagctacagtgaggatcca 952
|| ||||| |||||||| ||||||||||||||||||||||| |||||||| || || |||
Sbjct: 313 attgcggtgtgtagagacccaagatggggacgctgctatgaaagctacagcgaagaccca 372
Query: 953 aaggttgtccagtcactgacttcactcatctctggcctgcaaggtgacgctcctgcggat 1012
||||||||||||||| |||| ||||||||||||| ||||||||||||| ||| || | |
Sbjct: 373 aaggttgtccagtcaatgaccacactcatctctggtctgcaaggtgacgttccggctggt 432
Query: 1013 tccgcgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagcactat 1072
|| | ||||||||| || ||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct: 433 tctgagggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagcactat 492
Query: 1073 gtcggtgatggtggaacgcataacggaatcaacgagaacaacacgatcatcgacacacac 1132
|| ||||||||||| ||| || || |||||||||||| | || ||||| ||| | ||
Sbjct: 493 gttggtgatggtggtacgtttatggggatcaacgagaacgatacaatcattgacgcccat 552
Query: 1133 gggctgctgagcatccatatgcctccttactacaactctatcatccgaggtgtc-tccac 1191
|||||| ||| |||||||||||| |||| ||||| ||||||||| |||||||| |||||
Sbjct: 553 gggctgatgactatccatatgcctgcttattacaattctatcatcagaggtgtcttccac 612
Query: 1192 ggtcatggtctcctactccagctggaacggagtgaagatgcacgcgaaccatttcct 1248
|| ||| ||| ||||| ||||||||||| ||| |||||||| |||||||||||
Sbjct: 613 tgttatgacctcgtactctagctggaacggcaagaaaatgcacgccaaccatttcct 669
>gb|BG366042.2|BG366042 HVSMEi0004P02f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004P02f, mRNA sequence
Length = 914
Score = 440 bits (222), Expect = e-121
Identities = 516/614 (84%)
Strand = Plus / Plus
Query: 881 tttgctccctgtatagcggtctgtagagatccaagatggggacgctgctatgagagctac 940
|||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 4 tttgctccgtgtattgcggtgtgtagagacccaagatggggacgctgctatgaaagctac 63
Query: 941 agtgaggatccaaaggttgtccagtcactgacttcactcatctctggcctgcaaggtgac 1000
|| || || |||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct: 64 agcgaagacccaaaggttgtccagtcaatgaccacactcatctctggtctgcaaggtgac 123
Query: 1001 gctcctgcggattccgcgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgc 1060
| ||| || | ||| | ||||||||| || ||||| |||||||||||||| ||||| |||
Sbjct: 124 gttccggctggttctgagggaaggccatacgttggtggaagtaagaaggttgctgcatgc 183
Query: 1061 gcgaagcactatgtcggtgatggtggaacgcataacggaatcaacgagaacaacacgatc 1120
|| ||||||||||| ||||||||||| ||| || || |||||||||||| | || |||
Sbjct: 184 gcaaagcactatgttggtgatggtggtacgtttatggggatcaacgagaacgatacaatc 243
Query: 1121 atcgacacacacgggctgctgagcatccatatgcctccttactacaactctatcatccga 1180
|| ||| | || |||||| ||| |||||||||||| |||| ||||| ||||||||| ||
Sbjct: 244 attgacgcccatgggctgatgactatccatatgcctgcttattacaattctatcatcaga 303
Query: 1181 ggtgtctccacggtcatggtctcctactccagctggaacggagtgaagatgcacgcgaac 1240
||||||||||| || ||| ||| ||||| ||||||||||| ||| |||||||| |||
Sbjct: 304 ggtgtctccactgttatgacctcgtactctagctggaacggcaagaaaatgcacgccaac 363
Query: 1241 catttcctagtcacggattttctcaagaacaagctcaagtttaggggttttgtgatttcc 1300
|||||||| ||||| |||||||| |||||||||||||| ||| ||||||| ||||||||
Sbjct: 364 catttccttgtcactgattttctgaagaacaagctcaaatttcggggtttcgtgatttca 423
Query: 1301 gactgggagggcattgatcggatcactactcctcctcacgccaactactcttactcaatt 1360
|||||| | |||||||||||||| |||| ||||| || ||||| ||||| ||| ||
Sbjct: 424 gactggcaaggcattgatcggattactagccctccaggcgtgaactattcttattcagtt 483
Query: 1361 gaggctggtgttggtgctggaattgacatgatcatggttccattcaggtacacagaattc 1420
|||||||| |||||||| || |||||||||||||||||||| | ||||||||||||
Sbjct: 484 gaggctggagttggtgccggtattgacatgatcatggttccttgtgcctacacagaattc 543
Query: 1421 atcgacgacctgacgacacaagttcagaacaaggtcatccccatgagcagaatcgacgac 1480
|| || || ||||| |||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 544 attgatgatctgacataccaagttaagaacaacatcatccccatgagcagaatcaacgat 603
Query: 1481 gccgtctacaggat 1494
|| |||||||||||
Sbjct: 604 gctgtctacaggat 617
>gb|AV833446.1|AV833446 AV833446 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp. vulgare
cDNA clone bags9e08, mRNA sequence
Length = 557
Score = 438 bits (221), Expect = e-121
Identities = 474/557 (85%), Gaps = 1/557 (0%)
Strand = Plus / Plus
Query: 838 agcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgtatagc 897
|||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||
Sbjct: 1 agcaactgctcttgaagttagagcaacaggaattccttacgcttttgctccgtgtattgc 60
Query: 898 ggtctgtagagatccaag-atggggacgctgctatgagagctacagtgaggatccaaagg 956
||| |||||||| ||||| |||||||||||||||||| |||||||| || || |||||||
Sbjct: 61 ggtgtgtagagacccaagtatggggacgctgctatgaaagctacagcgaagacccaaagg 120
Query: 957 ttgtccagtcactgacttcactcatctctggcctgcaaggtgacgctcctgcggattccg 1016
||||||||||| |||| ||||||||||||| ||||||||||||| ||| || | ||| |
Sbjct: 121 ttgtccagtcaatgaccacactcatctctggtctgcaaggtgacgttccggctggttctg 180
Query: 1017 cgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagcactatgtcg 1076
||||||||| || ||||| |||||||||||||| ||||| ||||| ||||||||||| |
Sbjct: 181 agggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagcactatgttg 240
Query: 1077 gtgatggtggaacgcataacggaatcaacgagaacaacacgatcatcgacacacacgggc 1136
|||||||||| ||| || || |||||||||||| | || ||||| ||| | || ||||
Sbjct: 241 gtgatggtggtacgtttatggggatcaacgagaacgatacaatcattgacgcccatgggc 300
Query: 1137 tgctgagcatccatatgcctccttactacaactctatcatccgaggtgtctccacggtca 1196
|| ||| |||||||||||| |||| ||||| ||||||||| ||||||||||||| || |
Sbjct: 301 tgatgactatccatatgcctgcttattacaattctatcatcagaggtgtctccactgtta 360
Query: 1197 tggtctcctactccagctggaacggagtgaagatgcacgcgaaccatttcctagtcacgg 1256
|| ||| ||||| ||||||||||| ||| |||||||| ||||||||||| ||||| |
Sbjct: 361 tgacctcgtactctagctggaacggcaagaaaatgcacgccaaccatttccttgtcactg 420
Query: 1257 attttctcaagaacaagctcaagtttaggggttttgtgatttccgactgggagggcattg 1316
||||||| |||||||||||||| ||| ||||||| |||||||| |||||| | |||||||
Sbjct: 421 attttctgaagaacaagctcaaatttcggggtttcgtgatttcagactggcaaggcattg 480
Query: 1317 atcggatcactactcctcctcacgccaactactcttactcaattgaggctggtgttggtg 1376
||||||| |||| ||||| || ||||| ||||| ||| |||||||||| |||||||
Sbjct: 481 atcggattactagccctccaggcgtgaactattcttattcagttgaggctggagttggtg 540
Query: 1377 ctggaattgacatgatc 1393
| || ||||||||||||
Sbjct: 541 ccggtattgacatgatc 557
>gb|BQ766906.1|BQ766906 EBro08_SQ007_O10_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_O10 5', mRNA sequence
Length = 646
Score = 436 bits (220), Expect = e-120
Identities = 529/632 (83%)
Strand = Plus / Plus
Query: 588 ccaaatacttcataggtagcgtgctgagcggcggaggcagcgtgcctgctcctcaggcgt 647
|||| ||||||||||||||||| ||||| || |||||||| |||||| ||||||| || |
Sbjct: 15 ccaagtacttcataggtagcgtactgagtggtggaggcagtgtgccttctcctcaagcat 74
Query: 648 ctgctcaggcttgggccgccatggtgaccgagatgcagaagggcgctctttctacgcgtc 707
| ||| ||||||| | ||||||| || ||||| |||||||| |||||||| || |
Sbjct: 75 ccgctgcggcttggcagtcgatggtgaatgaaatgcaaaagggcgccctttctacccgcc 134
Query: 708 tgggtataccgatcatctacggtatcgatgcagtgcatgggcacaacaacgtctacaaag 767
| || || ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||
Sbjct: 135 taggcattccgatgatctacggtattgatgctgtgcacggtcacaacaacgtgtacaaag 194
Query: 768 ctactattttccctcacaacgtcgggcttggagctaccagggaccctgacctcgttaaga 827
|||| || ||||| || || || || || || ||||||||||||||| | || ||||
Sbjct: 195 ctaccatcttcccacataatgttggcctcggtgctaccagggaccctatgttggtaaaga 254
Query: 828 gaattggagaagcaactgctcttgaagttagagctactggaattccttacgcctttgctc 887
| || ||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 255 ggataggagaagcaactgctcttgaagttagagcaacaggaattccttacgcttttgctc 314
Query: 888 cctgtatagcggtctgtagagatccaagatggggacgctgctatgagagctacagtgagg 947
| ||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| || |
Sbjct: 315 cgtgtattgcggtgtgtagagacccaagatggggacgctgctatgaaagctacagcgaag 374
Query: 948 atccaaaggttgtccagtcactgacttcactcatctctggcctgcaaggtgacgctcctg 1007
| |||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||| |
Sbjct: 375 acccaaaggttgtccagtcaatgaccacactcatctctggtctgcaaggtgacgttccgg 434
Query: 1008 cggattccgcgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagc 1067
| | ||| | ||||||||| || ||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 435 ctggttctgagggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagc 494
Query: 1068 actatgtcggtgatggtggaacgcataacggaatcaacgagaacaacacgatcatcgaca 1127
||||||| ||||||||||| ||| || || |||||||||||| | || ||||| |||
Sbjct: 495 actatgttggtgatggtggtacgtttatggggatcaacgagaacgatacaatcattgacg 554
Query: 1128 cacacgggctgctgagcatccatatgcctccttactacaactctatcatccgaggtgtct 1187
| || |||||| ||| |||||||||||| |||| ||||| ||||||||| |||||||||
Sbjct: 555 cccatgggctgatgactatccatatgcctgcttattacaattctatcatcagaggtgtct 614
Query: 1188 ccacggtcatggtctcctactccagctggaac 1219
|||| || ||| ||| ||||| |||||||||
Sbjct: 615 ccactgttatgacctcgtactctagctggaac 646
>gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9e08 3', mRNA sequence
Length = 682
Score = 434 bits (219), Expect = e-120
Identities = 474/556 (85%), Gaps = 6/556 (1%)
Strand = Plus / Minus
Query: 1707 acgacctgggcaaccagtgcggggggtggacgatcacgtggcaaggaagcagcggcaac- 1765
||||| |||||||||||||||| || ||||| ||||| ||||||||| | |||||||
Sbjct: 660 acgacttgggcaaccagtgcggaggatggaccatcacatggcaaggacagaccggcaacg 601
Query: 1766 --actactgccggcacgacgatcctctccgggatcgaggccaccgtggaccccagcacgc 1823
| |||||||| ||||||||||| || | |||| || ||||||| ||||||||||||
Sbjct: 600 acaaaactgccgggacgacgatcctttcggcgatcaagtccaccgtcgaccccagcacgg 541
Query: 1824 aggtggtgtactcggagagcccggacagcggcgt-gctggc--cgacaagtacgactacg 1880
||||||| | ||| |||| ||| ||||||| || | || | || ||||||||||||||
Sbjct: 540 aggtggtcttctcagagaaccctgacagcgccgccgttgacagcggcaagtacgactacg 481
Query: 1881 cgatcgtggtggtcggggagccgccatacgcggagacgttcggcgacaacctgaacctga 1940
| |||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 480 ccatcgtggtggtcggcgagccaccgtacgctgagacgttcggcgacaacctgaacctga 421
Query: 1941 cgatcccggcgcccgggccgagcgtgatccagtcggtgtgcggggccgccaagtgcgtgg 2000
||||||| |||||||| || ||||||||| |||||| | || || ||||||||
Sbjct: 420 cgatccctgcgcccggcccctcggtgatccagaacgtgtgcaagagcgtcaggtgcgtgg 361
Query: 2001 tggtcctcatctccggcaggccgctggtggtggagccgtacctgggcgacatggacgcgc 2060
|||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 360 tggtgctcatctccggcaggccgctggtggtggagccgtacatcagcgccatggacgcgt 301
Query: 2061 tggtggcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgctgttcggcg 2120
| || || ||||||||||| || |||||||| ||||||||||| ||||||||||||||||
Sbjct: 300 tcgtcgccgcgtggctgcccggctcggagggccagggcgtggccgacgtgctgttcggcg 241
Query: 2121 actacgggttcacggggaagctgccgcggacgtggttcaagtcggtggaccagctgccca 2180
||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||| |
Sbjct: 240 actacgggttctccgggaagctggcgcggacgtggttcaagtcggcggaccagctgccga 181
Query: 2181 tgaacgtgggcgacgcgcactacgacccgctcttcccgttcggcttcggactcaccacca 2240
||||||| |||||| ||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 180 tgaacgtcggcgacaagcactacgacccgctcttccccttcgggttcggcctcaccaccg 121
Query: 2241 agggcacgaagtgagt 2256
||| || |||||||||
Sbjct: 120 aggccaagaagtgagt 105
>gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 5', mRNA sequence
Length = 585
Score = 426 bits (215), Expect = e-117
Identities = 483/568 (85%), Gaps = 7/568 (1%)
Strand = Plus / Plus
Query: 1679 aagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacg 1738
|||||||| ||||| || |||||||| ||||| |||||||||||||||| || |||||
Sbjct: 16 aagatcctcgtcgctggaagccacgctgacgacttgggcaaccagtgcggaggatggacc 75
Query: 1739 atcacgtggcaaggaagcagcggcaac---actactgccggcacgacgatcctctccggg 1795
||||| ||||||||| | ||||||| | |||||||| ||||||||||| || | |
Sbjct: 76 atcacatggcaaggacagaccggcaacgacaaaactgccgggacgacgatcctttcggcg 135
Query: 1796 atcgaggccaccgtggaccccagcacgcaggtggtgtactcggagagcccggacagcggc 1855
||| || ||||||| |||||||||||| ||||||| | ||| |||| ||| ||||||| |
Sbjct: 136 atcaagtccaccgtcgaccccagcacggaggtggtcttctcagagaaccctgacagcgcc 195
Query: 1856 gt-gctggc--cgacaagtacgactacgcgatcgtggtggtcggggagccgccatacgcg 1912
| | || | || ||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 196 gccgttgacagcggcaagtacgactacgccatcgtggtggtcggcgagccaccgtacgct 255
Query: 1913 gagacgttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcgtgatccag 1972
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct: 256 gagacgttcggcgacaacctgaacctgacgatccctgcgcccggcccctcggtgatccag 315
Query: 1973 tcggtgtgcggggccgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtg 2032
|||||| | || || |||||||||||| |||||||||||||||||||||||||||
Sbjct: 316 aacgtgtgcaagagcgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtg 375
Query: 2033 gagccgtacctgggcgacatggacgcgctggtggcggcgtggctgccagggtcggagggg 2092
||||||||| | ||| |||||||||| | || || ||||||||||| || ||||||||
Sbjct: 376 gagccgtacatcagcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggc 435
Query: 2093 cagggcgtggcg-gacgtgctgttcggcgactacgggttcacggggaagctgccgcggac 2151
||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct: 436 cagggcgtggcccgacgtgctgttcggcgactacgggttctccgggaagctggcgcggac 495
Query: 2152 gtggttcaagtcggtggaccagctgcccatgaacgtgggcgacgcgcactacgacccgct 2211
|||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 496 gtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccgct 555
Query: 2212 cttcccgttcggcttcggactcaccacc 2239
|||||| ||||| ||||| |||||||||
Sbjct: 556 cttccccttcgggttcggcctcaccacc 583
>gb|BQ459096.1|BQ459096 HA02F14r HA Hordeum vulgare subsp. vulgare cDNA clone HA02F14
5-PRIME, mRNA sequence
Length = 628
Score = 422 bits (213), Expect = e-116
Identities = 480/569 (84%)
Strand = Plus / Plus
Query: 680 atgcagaagggcgctctttctacgcgtctgggtataccgatcatctacggtatcgatgca 739
||||| |||||||| |||||||| || || || || ||||| ||||||||||| |||||
Sbjct: 60 atgcaaaagggcgccctttctacccgcctaggcattccgatgatctacggtattgatgct 119
Query: 740 gtgcatgggcacaacaacgtctacaaagctactattttccctcacaacgtcgggcttgga 799
||||| || ||||||||||| ||||||||||| || ||||| || || || || || ||
Sbjct: 120 gtgcacggtcacaacaacgtgtacaaagctaccatcttcccacataatgttggcctcggt 179
Query: 800 gctaccagggaccctgacctcgttaagagaattggagaagcaactgctcttgaagttaga 859
||||||||||||||| | || ||||| || |||||||||||||||||||||||||||
Sbjct: 180 gctaccagggaccctatgttggtaaagaggataggagaagcaactgctcttgaagttaga 239
Query: 860 gctactggaattccttacgcctttgctccctgtatagcggtctgtagagatccaagatgg 919
|| || |||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||
Sbjct: 240 gcaacaggaattccttacgcttttgctccgtgtattgcggtgtgtagagacccaagatgg 299
Query: 920 ggacgctgctatgagagctacagtgaggatccaaaggttgtccagtcactgacttcactc 979
|||||||||||||| |||||||| || || |||||||||||||||||| |||| |||||
Sbjct: 300 ggacgctgctatgaaagctacagcgaagacccaaaggttgtccagtcaatgaccacactc 359
Query: 980 atctctggcctgcaaggtgacgctcctgcggattccgcgggaaggccgtatgttggggga 1039
|||||||| ||||||||||||| ||| || | ||| | ||||||||| || ||||| |||
Sbjct: 360 atctctggtctgcaaggtgacgttccggctggttctgagggaaggccatacgttggtgga 419
Query: 1040 agtaagaaggtcgctgcgtgcgcgaagcactatgtcggtgatggtggaacgcataacgga 1099
||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||| || ||
Sbjct: 420 agtaagaaggttgctgcatgcgcaaagcactatgttggtgatggtggtacgtttatgggg 479
Query: 1100 atcaacgagaacaacacgatcatcgacacacacgggctgctgagcatccatatgcctcct 1159
|||||||||||| | || ||||| ||| | || |||||| ||| |||||||||||| ||
Sbjct: 480 atcaacgagaacgatacaatcattgacgcccatgggctgatgactatccatatgcctgct 539
Query: 1160 tactacaactctatcatccgaggtgtctccacggtcatggtctcctactccagctggaac 1219
|| ||||| ||||||||| ||||||||||||| || ||| ||| ||||| |||||||||
Sbjct: 540 tattacaattctatcatcagaggtgtctccactgttatgacctcgtactctagctggaac 599
Query: 1220 ggagtgaagatgcacgcgaaccatttcct 1248
|| ||| |||||||| |||||||||||
Sbjct: 600 ggcaagaaaatgcacgccaaccatttcct 628
>gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak12b24 3', mRNA sequence
Length = 609
Score = 420 bits (212), Expect = e-115
Identities = 423/491 (86%), Gaps = 3/491 (0%)
Strand = Plus / Minus
Query: 1769 actgccggcacgacgatcctctccgggatcgaggccaccgtggaccccagcacgcaggtg 1828
|||||||| ||||||||||| || | |||| || ||||||| |||||||||||| |||||
Sbjct: 598 actgccgggacgacgatcctttcggcgatcaagtccaccgtcgaccccagcacggaggtg 539
Query: 1829 gtgtactcggagagcccggacagcggcgt-gctggc--cgacaagtacgactacgcgatc 1885
|| | ||| |||| ||| ||||||| || | || | || ||||||||||||||| |||
Sbjct: 538 gtcttctcagagaaccctgacagcgccgccgttgacagcggcaagtacgactacgccatc 479
Query: 1886 gtggtggtcggggagccgccatacgcggagacgttcggcgacaacctgaacctgacgatc 1945
||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 478 gtggtggtcggcgagccaccgtacgccgagacgttcggcgacaacctgaacctgacgatc 419
Query: 1946 ccggcgcccgggccgagcgtgatccagtcggtgtgcggggccgccaagtgcgtggtggtc 2005
|| |||||||| || ||||||||| | |||||| | || || ||||||||||||
Sbjct: 418 cctgcgcccggcccctcggtgatccagaccgtgtgcaagagcgtcaggtgcgtggtggtg 359
Query: 2006 ctcatctccggcaggccgctggtggtggagccgtacctgggcgacatggacgcgctggtg 2065
|||||||||||||||||||||||| ||||||||||| | ||| |||||||||| | ||
Sbjct: 358 ctcatctccggcaggccgctggtgctggagccgtacatcagcgccatggacgcgttcgtc 299
Query: 2066 gcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgctgttcggcgactac 2125
|| ||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 298 gccgcgtggctgcccggctcggagggccagggcgtggccgacgtgctgttcggcgactac 239
Query: 2126 gggttcacggggaagctgccgcggacgtggttcaagtcggtggaccagctgcccatgaac 2185
|||||| | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 238 gggttctccgggaagctggcgcggacgtggttcaagtcggcggaccagctgccgatgaac 179
Query: 2186 gtgggcgacgcgcactacgacccgctcttcccgttcggcttcggactcaccaccaagggc 2245
|| |||||| ||||||||||||||||||||| ||||| ||||| ||||||||| ||| |
Sbjct: 178 gtcggcgacaagcactacgacccgctcttccccttcgggttcggcctcaccaccgaggcc 119
Query: 2246 acgaagtgagt 2256
| |||||||||
Sbjct: 118 aagaagtgagt 108
>gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd24f16 3', mRNA sequence
Length = 599
Score = 420 bits (212), Expect = e-115
Identities = 423/491 (86%), Gaps = 3/491 (0%)
Strand = Plus / Minus
Query: 1769 actgccggcacgacgatcctctccgggatcgaggccaccgtggaccccagcacgcaggtg 1828
|||||||| ||||||||||| || | |||| || ||||||| |||||||||||| |||||
Sbjct: 560 actgccgggacgacgatcctttcggcgatcaagtccaccgtcgaccccagcacggaggtg 501
Query: 1829 gtgtactcggagagcccggacagcggcgt-gctggc--cgacaagtacgactacgcgatc 1885
|| | ||| |||| ||| ||||||| || | || | || ||||||||||||||| |||
Sbjct: 500 gtcttctcagagaaccctgacagcgccgccgttgacagcggcaagtacgactacgccatc 441
Query: 1886 gtggtggtcggggagccgccatacgcggagacgttcggcgacaacctgaacctgacgatc 1945
||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 gtggtggtcggcgagccaccgtacgctgagacgttcggcgacaacctgaacctgacgatc 381
Query: 1946 ccggcgcccgggccgagcgtgatccagtcggtgtgcggggccgccaagtgcgtggtggtc 2005
|| |||||||| || ||||||||| |||||| | || || ||||||||||||
Sbjct: 380 cctgcgcccggcccctcggtgatccagaacgtgtgcaagagcgtcaggtgcgtggtggtg 321
Query: 2006 ctcatctccggcaggccgctggtggtggagccgtacctgggcgacatggacgcgctggtg 2065
|||||||||||||||||||||||||||||||||||| | ||| |||||||||| | ||
Sbjct: 320 ctcatctccggcaggccgctggtggtggagccgtacatcagcgccatggacgcgttcgtc 261
Query: 2066 gcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgctgttcggcgactac 2125
|| ||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 260 gccgcgtggctgcccggctcggagggccagggcgtggccgacgtgctgttcggcgactac 201
Query: 2126 gggttcacggggaagctgccgcggacgtggttcaagtcggtggaccagctgcccatgaac 2185
|||||| | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 200 gggttctccgggaagctggcgcggacgtggttcaagtcggcggaccagctgccgatgaac 141
Query: 2186 gtgggcgacgcgcactacgacccgctcttcccgttcggcttcggactcaccaccaagggc 2245
|| |||||| ||||||||||||||||||||| ||||| ||||| ||||||||| ||| |
Sbjct: 140 gtcggcgacaagcactacgacccgctcttccccttcgggttcggcctcaccaccgaggcc 81
Query: 2246 acgaagtgagt 2256
| |||||||||
Sbjct: 80 aagaagtgagt 70
>gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0004G19f, mRNA sequence
Length = 636
Score = 418 bits (211), Expect = e-115
Identities = 422/490 (86%), Gaps = 3/490 (0%)
Strand = Plus / Plus
Query: 1770 ctgccggcacgacgatcctctccgggatcgaggccaccgtggaccccagcacgcaggtgg 1829
||||||| ||||||||||| || | |||| || ||||||| |||||||||||| ||||||
Sbjct: 7 ctgccgggacgacgatcctttcggcgatcaagtccaccgtcgaccccagcacggaggtgg 66
Query: 1830 tgtactcggagagcccggacagcggcgt-gctggc--cgacaagtacgactacgcgatcg 1886
| | ||| |||| ||| ||||||| || | || | || ||||||||||||||| ||||
Sbjct: 67 tcttctcagagaaccctgacagcgccgccgttgacagcggcaagtacgactacgccatcg 126
Query: 1887 tggtggtcggggagccgccatacgcggagacgttcggcgacaacctgaacctgacgatcc 1946
|||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 127 tggtggtcggcgagccaccgtacgctgagacgttcggcgacaacctgaacctgacgatcc 186
Query: 1947 cggcgcccgggccgagcgtgatccagtcggtgtgcggggccgccaagtgcgtggtggtcc 2006
| |||||||| || ||||||||| |||||| | || || |||||||||||| |
Sbjct: 187 ctgcgcccggcccctcggtgatccagaacgtgtgcaagagcgtcaggtgcgtggtggtgc 246
Query: 2007 tcatctccggcaggccgctggtggtggagccgtacctgggcgacatggacgcgctggtgg 2066
||||||||||||||||||||||||||||||||||| | ||| |||||||||| | || |
Sbjct: 247 tcatctccggcaggccgctggtggtggagccgtacatcagcgccatggacgcgttcgtcg 306
Query: 2067 cggcgtggctgccagggtcggaggggcagggcgtggcggacgtgctgttcggcgactacg 2126
| ||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 307 ccgcgtggctgcccggctcggagggccagggcgtggccgacgtgctgttcggcgactacg 366
Query: 2127 ggttcacggggaagctgccgcggacgtggttcaagtcggtggaccagctgcccatgaacg 2186
||||| | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 367 ggttctccgggaagctggcgcggacgtggttcaagtcggcggaccagctgccgatgaacg 426
Query: 2187 tgggcgacgcgcactacgacccgctcttcccgttcggcttcggactcaccaccaagggca 2246
| |||||| ||||||||||||||||||||| ||||| ||||| ||||||||| ||| ||
Sbjct: 427 tcggcgacaagcactacgacccgctcttccccttcgggttcggcctcaccaccgaggcca 486
Query: 2247 cgaagtgagt 2256
|||||||||
Sbjct: 487 agaagtgagt 496
>gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak12b24 5', mRNA sequence
Length = 655
Score = 410 bits (207), Expect = e-113
Identities = 415/482 (86%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 1778 acgacgatcctctccgggatcgaggccaccgtggaccccagcacgcaggtggtgtactcg 1837
||||||||||| || | |||| || ||||||| |||||||||||| ||||||| | |||
Sbjct: 46 acgacgatcctttcggcgatcaagtccaccgtcgaccccagcacggaggtggtcttctca 105
Query: 1838 gagagcccggacagcggcgt-gctggc--cgacaagtacgactacgcgatcgtggtggtc 1894
|||| ||| ||||||| || | || | || ||||||||||||||| ||||||||||||
Sbjct: 106 gagaaccctgacagcgccgccgttgacagcggcaagtacgactacgccatcgtggtggtc 165
Query: 1895 ggggagccgccatacgcggagacgttcggcgacaacctgaacctgacgatcccggcgccc 1954
|| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 166 ggcgagccaccgtacgccgagacgttcggcgacaacctgaacctgacgatccctgcgccc 225
Query: 1955 gggccgagcgtgatccagtcggtgtgcggggccgccaagtgcgtggtggtcctcatctcc 2014
|| || ||||||||| | |||||| | || || |||||||||||| |||||||||
Sbjct: 226 ggcccctcggtgatccagaccgtgtgcaagagcgtcaggtgcgtggtggtgctcatctcc 285
Query: 2015 ggcaggccgctggtggtggagccgtacctgggcgacatggacgcgctggtggcggcgtgg 2074
||||||||||||||| ||||||||||| | ||| |||||||||| | || || ||||||
Sbjct: 286 ggcaggccgctggtgctggagccgtacatcagcgccatggacgcgttcgtcgccgcgtgg 345
Query: 2075 ctgccagggtcggaggggcagggcgtggcggacgtgctgttcggcgactacgggttcacg 2134
||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 346 ctgcccggctcggagggccagggcgtggccgacgtgctgttcggcgactacgggttctcc 405
Query: 2135 gggaagctgccgcggacgtggttcaagtcggtggaccagctgcccatgaacgtgggcgac 2194
||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 406 gggaagctggcgcggacgtggttcaagtcggcggaccagctgccgatgaacgtcggcgac 465
Query: 2195 gcgcactacgacccgctcttcccgttcggcttcggactcaccaccaagggcacgaagtga 2254
||||||||||||||||||||| ||||| ||||| ||||||||| ||| || |||||||
Sbjct: 466 aagcactacgacccgctcttccccttcgggttcggcctcaccaccgaggccaagaagtga 525
Query: 2255 gt 2256
||
Sbjct: 526 gt 527
>gb|BF258158.2|BF258158 HVSMEf0014P07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0014P07f, mRNA sequence
Length = 575
Score = 404 bits (204), Expect = e-111
Identities = 475/563 (84%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 716 ccgatcatctacggtatcgatgcagtgcatgggcacaacaacgtctacaaagctactatt 775
||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||||||| ||
Sbjct: 13 ccgatgatctacggtattgatgctgtgcacggtcacaacaacgtgtacaaagctaccatc 72
Query: 776 ttccctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattgga 835
||||| || || || || || || ||||||||||||||| | || ||||| || |||
Sbjct: 73 ttcccacataatgttggcctcggtgctaccagggaccctatgttggtaaagaggatagga 132
Query: 836 gaagcaactgctcttgaagttagagctactggaattccttacgcctttgctccctgtata 895
|||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||
Sbjct: 133 gaagcaactgctcttgaagttagagcaacaggaattccttacgcttttgctccgtgtatt 192
Query: 896 gcggtctgtagagatccaagatggggacgctgctatgagagctacagtgaggatccaaag 955
||||| |||||||| ||||||||||||||||||||||| |||||||| || || ||||||
Sbjct: 193 gcggtgtgtagagacccaagatggggacgctgctatgaaagctacagcgaagacccaaag 252
Query: 956 gttgtccagtcactgacttcactcatctctggcctgcaaggtgacgctcctgcggattcc 1015
|||||||||||| |||| ||||||||||||| ||||||||||||| ||| || | |||
Sbjct: 253 gttgtccagtcaatgaccacactcatctctggtctgcaaggtgacgttccggctggttct 312
Query: 1016 gcgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagcactatgtc 1075
| ||||||||| || ||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 313 gagggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagcactatgtt 372
Query: 1076 ggtgatggtggaacgcataacggaatcaacgagaacaacacgatcatcgacacacacggg 1135
||||||||||| ||| || | |||||||||||| | || ||||| ||| | || |||
Sbjct: 373 ggtgatggtggtacgtttatggngatcaacgagaacgatacaatcattgacgcccatggg 432
Query: 1136 ctgctgagcatccatatgcctccttactacaactctatcatccgaggtgtctccacggtc 1195
||| ||| |||||||||||| |||| ||||| ||||||||| ||||||||||||| ||
Sbjct: 433 ctgatgactatccatatgcctgcttattacaattctatcatcagaggtgtctccactgtt 492
Query: 1196 atggtctcctactcca-gctggaacggagtgaagatgcacgcgaaccatttcctagtcac 1254
||| ||| ||||| | ||||| |||| ||| |||||||| ||||||||||| |||||
Sbjct: 493 atgacctcgtactctangctgg-acgggaagaaaatgcacgccaaccatttccttgtcac 551
Query: 1255 ggattttctcaagaacaagctca 1277
|||||||| |||||||||||||
Sbjct: 552 tgattttctgaagaacaagctca 574
>gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. vulgare cDNA clone HU04K15
3-PRIME, mRNA sequence
Length = 582
Score = 400 bits (202), Expect = e-110
Identities = 343/390 (87%)
Strand = Plus / Minus
Query: 1867 caagtacgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcga 1926
||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 508 caagtacgactacgccatcgtggtggtcggcgagccaccgtacgctgagacgttcggcga 449
Query: 1927 caacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgcggggc 1986
||||||||||||||||||||| |||||||| || ||||||||| |||||| |
Sbjct: 448 caacctgaacctgacgatccctgcgcccggcccctcggtgatccagaacgtgtgcaagag 389
Query: 1987 cgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctggg 2046
|| || |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct: 388 cgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcag 329
Query: 2047 cgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcgga 2106
|| |||||||||| | || || ||||||||||| || |||||||| ||||||||||| ||
Sbjct: 328 cgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccga 269
Query: 2107 cgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggt 2166
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 268 cgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggc 209
Query: 2167 ggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggctt 2226
|||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||
Sbjct: 208 ggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggtt 149
Query: 2227 cggactcaccaccaagggcacgaagtgagt 2256
||| ||||||||| ||| || |||||||||
Sbjct: 148 cggcctcaccaccgaggccaagaagtgagt 119
>gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_F17 5', mRNA sequence
Length = 533
Score = 400 bits (202), Expect = e-110
Identities = 343/390 (87%)
Strand = Plus / Plus
Query: 1867 caagtacgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcga 1926
||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 16 caagtacgactacgccatcgtggtggtcggcgagccaccgtacgctgagacgttcggcga 75
Query: 1927 caacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgcggggc 1986
||||||||||||||||||||| |||||||| || ||||||||| |||||| |
Sbjct: 76 caacctgaacctgacgatccctgcgcccggcccctcggtgatccagaacgtgtgcaagag 135
Query: 1987 cgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctggg 2046
|| || |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct: 136 cgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcag 195
Query: 2047 cgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcgga 2106
|| |||||||||| | || || ||||||||||| || |||||||| ||||||||||| ||
Sbjct: 196 cgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccga 255
Query: 2107 cgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggt 2166
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 256 cgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggc 315
Query: 2167 ggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggctt 2226
|||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||
Sbjct: 316 ggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggtt 375
Query: 2227 cggactcaccaccaagggcacgaagtgagt 2256
||| ||||||||| ||| || |||||||||
Sbjct: 376 cggcctcaccaccgaggccaagaagtgagt 405
>gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. vulgare cDNA clone HI08B05
5-PRIME, mRNA sequence
Length = 594
Score = 400 bits (202), Expect = e-110
Identities = 343/390 (87%)
Strand = Plus / Minus
Query: 1867 caagtacgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcga 1926
||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 532 caagtacgactacgccatcgtggtggtcggcgagccaccgtacgctgagacgttcggcga 473
Query: 1927 caacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgcggggc 1986
||||||||||||||||||||| |||||||| || ||||||||| |||||| |
Sbjct: 472 caacctgaacctgacgatccctgcgcccggcccctcggtgatccagaacgtgtgcaagag 413
Query: 1987 cgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctggg 2046
|| || |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct: 412 cgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcag 353
Query: 2047 cgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcgga 2106
|| |||||||||| | || || ||||||||||| || |||||||| ||||||||||| ||
Sbjct: 352 cgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccga 293
Query: 2107 cgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggt 2166
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 292 cgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggc 233
Query: 2167 ggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggctt 2226
|||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||
Sbjct: 232 ggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggtt 173
Query: 2227 cggactcaccaccaagggcacgaagtgagt 2256
||| ||||||||| ||| || |||||||||
Sbjct: 172 cggcctcaccaccgaggccaagaagtgagt 143
>gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26e21 3', mRNA sequence
Length = 522
Score = 400 bits (202), Expect = e-110
Identities = 343/390 (87%)
Strand = Plus / Minus
Query: 1867 caagtacgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcga 1926
||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 488 caagtacgactacgccatcgtggtggtcggcgagccaccgtacgctgagacgttcggcga 429
Query: 1927 caacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgcggggc 1986
||||||||||||||||||||| |||||||| || ||||||||| |||||| |
Sbjct: 428 caacctgaacctgacgatccctgcgcccggcccctcggtgatccagaacgtgtgcaagag 369
Query: 1987 cgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctggg 2046
|| || |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct: 368 cgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcag 309
Query: 2047 cgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcgga 2106
|| |||||||||| | || || ||||||||||| || |||||||| ||||||||||| ||
Sbjct: 308 cgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccga 249
Query: 2107 cgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggt 2166
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 248 cgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggc 189
Query: 2167 ggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggctt 2226
|||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||
Sbjct: 188 ggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggtt 129
Query: 2227 cggactcaccaccaagggcacgaagtgagt 2256
||| ||||||||| ||| || |||||||||
Sbjct: 128 cggcctcaccaccgaggccaagaagtgagt 99
>gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. vulgare cDNA clone HI06K15
3-PRIME, mRNA sequence
Length = 542
Score = 400 bits (202), Expect = e-110
Identities = 343/390 (87%)
Strand = Plus / Minus
Query: 1867 caagtacgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcga 1926
||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 508 caagtacgactacgccatcgtggtggtcggcgagccaccgtacgctgagacgttcggcga 449
Query: 1927 caacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgcggggc 1986
||||||||||||||||||||| |||||||| || ||||||||| |||||| |
Sbjct: 448 caacctgaacctgacgatccctgcgcccggcccctcggtgatccagaacgtgtgcaagag 389
Query: 1987 cgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctggg 2046
|| || |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct: 388 cgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcag 329
Query: 2047 cgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcgga 2106
|| |||||||||| | || || ||||||||||| || |||||||| ||||||||||| ||
Sbjct: 328 cgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccga 269
Query: 2107 cgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggt 2166
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 268 cgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggc 209
Query: 2167 ggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggctt 2226
|||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||
Sbjct: 208 ggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggtt 149
Query: 2227 cggactcaccaccaagggcacgaagtgagt 2256
||| ||||||||| ||| || |||||||||
Sbjct: 148 cggcctcaccaccgaggccaagaagtgagt 119
>gb|BU978383.1|BU978383 HA13B04r HA Hordeum vulgare subsp. vulgare cDNA clone HA13B04
5-PRIME, mRNA sequence
Length = 550
Score = 398 bits (201), Expect = e-109
Identities = 453/537 (84%)
Strand = Plus / Plus
Query: 499 caaggacctgctgggtcggatgactctcgccgaaaagatcggccagatgacgcagatcga 558
|||||| ||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 11 caaggatctgcttggtcggatgactctcgctgaaaagataggccagatgacccagatcga 70
Query: 559 gagggaaaacgccacggccgacgcgctggccaaatacttcataggtagcgtgctgagcgg 618
|||||| || |||||||| || || || |||| ||||||||||||||||| ||||| ||
Sbjct: 71 gagggagaatgccacggcagaggccatgtccaagtacttcataggtagcgtactgagtgg 130
Query: 619 cggaggcagcgtgcctgctcctcaggcgtctgctcaggcttgggccgccatggtgaccga 678
|||||||| |||||| ||||||| || || ||| ||||||| | ||||||| ||
Sbjct: 131 tggaggcagtgtgccttctcctcaagcatccgctgcggcttggcagtcgatggtgaatga 190
Query: 679 gatgcagaagggcgctctttctacgcgtctgggtataccgatcatctacggtatcgatgc 738
||||| |||||||| |||||||| || || || || ||||| ||||||||||| |||||
Sbjct: 191 aatgcaaaagggcgccctttctacccgcctaggcattccgatgatctacggtattgatgc 250
Query: 739 agtgcatgggcacaacaacgtctacaaagctactattttccctcacaacgtcgggcttgg 798
||||| || ||||||||||| ||||||||||| || ||||| || || || || || ||
Sbjct: 251 tgtgcacggtcacaacaacgtgtacaaagctaccatcttcccacataatgttggcctcgg 310
Query: 799 agctaccagggaccctgacctcgttaagagaattggagaagcaactgctcttgaagttag 858
||||||||||||||| | || ||||| || ||||||||||||||||||||||||||
Sbjct: 311 tgctaccagggaccctatgttggtaaagaggataggagaagcaactgctcttgaagttag 370
Query: 859 agctactggaattccttacgcctttgctccctgtatagcggtctgtagagatccaagatg 918
||| || |||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 371 agcaacaggaattccttacgcttttgctccgtgtattgcggtgtgtagagacccaagatg 430
Query: 919 gggacgctgctatgagagctacagtgaggatccaaaggttgtccagtcactgacttcact 978
||||||||||||||| |||||||| || || |||||||||||||||||| |||| ||||
Sbjct: 431 gggacgctgctatgaaagctacagcgaagacccaaaggttgtccagtcaatgaccacact 490
Query: 979 catctctggcctgcaaggtgacgctcctgcggattccgcgggaaggccgtatgttgg 1035
||||||||| ||||||||||||| ||| || | ||| | ||||||||| || |||||
Sbjct: 491 catctctggtctgcaaggtgacgttccggctggttctgagggaaggccatacgttgg 547
>gb|BM098018.2|BM098018 EBpi03_SQ002_F03_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_F03 5', mRNA sequence
Length = 523
Score = 392 bits (198), Expect = e-107
Identities = 343/390 (87%), Gaps = 1/390 (0%)
Strand = Plus / Plus
Query: 1867 caagtacgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcga 1926
||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 17 caagtacgactacgccatcgtggtggtcggcgagccaccgtacgctgagacgttcggcga 76
Query: 1927 caacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgcggggc 1986
||||||||||||||||||||| |||||||| || ||||||||| |||||| |
Sbjct: 77 caacctgaacctgacgatccctgcgcccggcccctcggtgatccagaacgtgtgcaagag 136
Query: 1987 cgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctggg 2046
|| || |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct: 137 cgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcag 196
Query: 2047 cgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcgga 2106
|| |||||||||| | || || ||||||||||| || |||||||| ||||||||||| ||
Sbjct: 197 cgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccga 256
Query: 2107 cgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggt 2166
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 257 cgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggc 316
Query: 2167 ggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggctt 2226
|||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||
Sbjct: 317 ggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccc-ttcgggtt 375
Query: 2227 cggactcaccaccaagggcacgaagtgagt 2256
||| ||||||||| ||| || |||||||||
Sbjct: 376 cggcctcaccaccgaggccaagaagtgagt 405
>gb|CA007641.1|CA007641 HU08J08r HU Hordeum vulgare subsp. vulgare cDNA clone HU08J08
5-PRIME, mRNA sequence
Length = 599
Score = 385 bits (194), Expect = e-105
Identities = 475/569 (83%)
Strand = Plus / Plus
Query: 588 ccaaatacttcataggtagcgtgctgagcggcggaggcagcgtgcctgctcctcaggcgt 647
|||| ||||||||||||||||| ||||| || |||||||| |||||| ||||||| || |
Sbjct: 30 ccaagtacttcataggtagcgtactgagtggtggaggcagtgtgccttctcctcaagcat 89
Query: 648 ctgctcaggcttgggccgccatggtgaccgagatgcagaagggcgctctttctacgcgtc 707
| ||| ||||||| | ||||||| || ||||| |||||||| |||||||| || |
Sbjct: 90 ccgctgcggcttggcagtcgatggtgaatgaaatgcaaaagggcgccctttctacccgcc 149
Query: 708 tgggtataccgatcatctacggtatcgatgcagtgcatgggcacaacaacgtctacaaag 767
| || || ||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||
Sbjct: 150 taggcattccgatgatctacggtattgatgctgtgcacggtcacaacaacgtgtacaaag 209
Query: 768 ctactattttccctcacaacgtcgggcttggagctaccagggaccctgacctcgttaaga 827
|||| || ||||| || || || || || || ||||||||||||||| | || ||||
Sbjct: 210 ctaccatcttcccacataatgttggcctcggtgctaccagggaccctatgttggtaaaga 269
Query: 828 gaattggagaagcaactgctcttgaagttagagctactggaattccttacgcctttgctc 887
| || ||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 270 ggataggagaagcaactgctcttgaagttagagcaacaggaattccttacgcttttgctc 329
Query: 888 cctgtatagcggtctgtagagatccaagatggggacgctgctatgagagctacagtgagg 947
| ||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| || |
Sbjct: 330 cgtgtattgcggtgtgtagagacccaagatggggacgctgctatgaaagctacagcgaag 389
Query: 948 atccaaaggttgtccagtcactgacttcactcatctctggcctgcaaggtgacgctcctg 1007
| |||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||| |
Sbjct: 390 acccaaaggttgtccagtcaatgaccacactcatctctggtctgcaaggtgacgttccgg 449
Query: 1008 cggattccgcgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagc 1067
| | ||| | ||||||||| || ||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 450 ctggttctgagggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagc 509
Query: 1068 actatgtcggtgatggtggaacgcataacggaatcaacgagaacaacacgatcatcgaca 1127
||||||| ||||||||||| ||| || | |||||||||||| | || ||||| |||
Sbjct: 510 actatgttggtgatggtggtacgtttatggngatcaacgagaacgatacaatcattgacg 569
Query: 1128 cacacgggctgctgagcatccatatgcct 1156
| || |||||| ||| ||||||||||||
Sbjct: 570 cccatgggctgatgactatccatatgcct 598
>gb|BQ465777.1|BQ465777 HU04K15r HU Hordeum vulgare subsp. vulgare cDNA clone HU04K15
5-PRIME, mRNA sequence
Length = 602
Score = 383 bits (193), Expect = e-104
Identities = 475/569 (83%)
Strand = Plus / Plus
Query: 950 ccaaaggttgtccagtcactgacttcactcatctctggcctgcaaggtgacgctcctgcg 1009
|||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||| ||
Sbjct: 12 ccaaaggttgtccagtcaatgaccacactcatctctggtctgcaaggtgacgttccggct 71
Query: 1010 gattccgcgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagcac 1069
| ||| | ||||||||| || ||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 72 ggttctgagggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagcac 131
Query: 1070 tatgtcggtgatggtggaacgcataacggaatcaacgagaacaacacgatcatcgacaca 1129
||||| ||||||||||| ||| || || |||||||||||| | || ||||| ||| |
Sbjct: 132 tatgttggtgatggtggtacgtttatggggatcaacgagaacgatacaatcattgacgcc 191
Query: 1130 cacgggctgctgagcatccatatgcctccttactacaactctatcatccgaggtgtctcc 1189
|| |||||| ||| |||||||||||| |||| ||||| ||||||||| |||||||||||
Sbjct: 192 catgggctgatgactatccatatgcctgcttattacaattctatcatcagaggtgtctcc 251
Query: 1190 acggtcatggtctcctactccagctggaacggagtgaagatgcacgcgaaccatttccta 1249
|| || ||| ||| ||||| ||||||||||| ||| |||||||| |||||||||||
Sbjct: 252 actgttatgacctcgtactctagctggaacggcaagaaaatgcacgccaaccatttcctt 311
Query: 1250 gtcacggattttctcaagaacaagctcaagtttaggggttttgtgatttccgactgggag 1309
||||| |||||||| |||||||||||||| ||| ||||||| |||||||| |||||| |
Sbjct: 312 gtcactgattttctgaagaacaagctcaaatttcggggtttcgtgatttcagactggcaa 371
Query: 1310 ggcattgatcggatcactactcctcctcacgccaactactcttactcaattgaggctggt 1369
|||||||||||||| |||| ||||| || ||||| ||||| ||| ||||||||||
Sbjct: 372 ggcattgatcggattactagccctccaggcgtgaactattcttattcagttgaggctgga 431
Query: 1370 gttggtgctggaattgacatgatcatggttccattcaggtacacagaattcatcgacgac 1429
|||||||| || |||||||||||||||||||| || |||||||||||||| || ||
Sbjct: 432 gttggtgccggtattgacatgatcatggttccttttgcctacacagaattcattgatgat 491
Query: 1430 ctgacgacacaagttcagaacaaggtcatccccatgagcagaatcgacgacgccgtctac 1489
||||| |||||| ||||||| |||||||||||||||||||| |||| || ||||||
Sbjct: 492 ctgacataccaagttaagaacaacatcatccccatgagcagaatcaacgatgctgtctac 551
Query: 1490 aggatccttcgtgtcaagttcaccatggg 1518
||||| || | || ||||||||||||||
Sbjct: 552 aggattctcagggtgaagttcaccatggg 580
>gb|BG366852.1|BG366852 HVSMEi0008K10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0008K10f, mRNA sequence
Length = 502
Score = 361 bits (182), Expect = 8e-098
Identities = 405/477 (84%), Gaps = 2/477 (0%)
Strand = Plus / Plus
Query: 854 gttagagctactggaattccttacgcctttgctccctgtatagcggtctgtagagatcca 913
|||||||| || |||||||||||||| |||||||| ||||| ||||| |||||||| |||
Sbjct: 1 gttagagcaacaggaattccttacgcttttgctccgtgtattgcggtgtgtagagaccca 60
Query: 914 agatggggacgctgctatgagagctacagtgaggatccaaaggttgtccagtcactgact 973
|||||||||||||||||||| |||||||| || || |||||||||||||||||| ||||
Sbjct: 61 agatggggacgctgctatgaaagctacagcgaagacccaaaggttgtccagtcaatgacc 120
Query: 974 tcactcatctctggcctgcaaggtgacgctcctgcggattccgcgggaaggccgtatgtt 1033
||||||||||||| ||||||||||||| ||| || | ||| | ||||||||| || |||
Sbjct: 121 acactcatctctggtctgcaaggtgacgttccggctggttctgagggaaggccatacgtt 180
Query: 1034 gggggaagtaagaaggtcgctgcgtgcgcgaagcactatgtcggtgatggtggaacgcat 1093
|| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||| |
Sbjct: 181 ggtggaagtaagaaggttgctgcatgcgcaaagcactatgttggtgatggtggtacgttt 240
Query: 1094 aacggaatcaacgagaacaacacgatcatcgacacacacgggctgctgagcatccatatg 1153
| || |||||||||||| | || ||||| ||| | || |||||| ||| |||||||||
Sbjct: 241 atggggatcaacgagaacgatacaatcattgacgcccatgggctgatgactatccatatg 300
Query: 1154 cctccttactacaactctatcatccgaggtgtctccacggtcatggtctcctactccagc 1213
||| |||| ||||| ||||||||| |||||||||||| || ||| ||| ||||| |||
Sbjct: 301 cctgcttattacaattctatcatcaaaggtgtctccactgttatgacctcgtactctagc 360
Query: 1214 tggaacgg-agtgaagatgcacg-cgaaccatttcctagtcacggattttctcaagaaca 1271
| |||||| | ||| ||||||| | ||||||||||| ||||| |||||||| |||||||
Sbjct: 361 ttgaacggcaaagaaaatgcacgcccaaccatttccttgtcactgattttctgaagaaca 420
Query: 1272 agctcaagtttaggggttttgtgatttccgactgggagggcattgatcggatcacta 1328
||||||| ||| ||||||| |||||||| |||||| | |||||||||||||| ||||
Sbjct: 421 agctcaaatttcggggtttcgtgatttcagactggcanggcattgatcggattacta 477
>gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. vulgare cDNA clone HA29O13
5-PRIME, mRNA sequence
Length = 447
Score = 361 bits (182), Expect = 8e-098
Identities = 320/366 (87%)
Strand = Plus / Plus
Query: 1891 ggtcggggagccgccatacgcggagacgttcggcgacaacctgaacctgacgatcccggc 1950
|||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 11 ggtcggcgagccaccgtacgctgagacgttcggcgacaacctgaacctgacgatccctgc 70
Query: 1951 gcccgggccgagcgtgatccagtcggtgtgcggggccgccaagtgcgtggtggtcctcat 2010
|||||| || ||||||||| |||||| | || || |||||||||||| |||||
Sbjct: 71 gcccggcccctcggtgatccagaacgtgtgcaagagcgtcaggtgcgtggtggtgctcat 130
Query: 2011 ctccggcaggccgctggtggtggagccgtacctgggcgacatggacgcgctggtggcggc 2070
||||||||||||||||||||||||||||||| | ||| |||||||||| | || || ||
Sbjct: 131 ctccggcaggccgctggtggtggagccgtacatcagcgccatggacgcgttcgtcgccgc 190
Query: 2071 gtggctgccagggtcggaggggcagggcgtggcggacgtgctgttcggcgactacgggtt 2130
||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 191 gtggctgcccggctcggagggccagggcgtggccgacgtgctgttcggcgactacgggtt 250
Query: 2131 cacggggaagctgccgcggacgtggttcaagtcggtggaccagctgcccatgaacgtggg 2190
| | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct: 251 ctccgggaagctggcgcggacgtggttcaagtcggcggaccagctgccgatgaacgtcgg 310
Query: 2191 cgacgcgcactacgacccgctcttcccgttcggcttcggactcaccaccaagggcacgaa 2250
|||| ||||||||||||||||||||| ||||| ||||| ||||||||| ||| || |||
Sbjct: 311 cgacaagcactacgacccgctcttccccttcgggttcggcctcaccaccgaggccaagaa 370
Query: 2251 gtgagt 2256
||||||
Sbjct: 371 gtgagt 376
>gb|BQ458498.1|BQ458498 HA05A21r HA Hordeum vulgare subsp. vulgare cDNA clone HA05A21
5-PRIME, mRNA sequence
Length = 598
Score = 357 bits (180), Expect = 1e-096
Identities = 453/544 (83%)
Strand = Plus / Plus
Query: 975 cactcatctctggcctgcaaggtgacgctcctgcggattccgcgggaaggccgtatgttg 1034
||||||||||||| ||||||||||||| ||| || | ||| | ||||||||| || ||||
Sbjct: 15 cactcatctctggtctgcaaggtgacgttccggctggttctgagggaaggccatacgttg 74
Query: 1035 ggggaagtaagaaggtcgctgcgtgcgcgaagcactatgtcggtgatggtggaacgcata 1094
| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||| ||
Sbjct: 75 gtggaagtaagaaggttgctgcatgcgcaaagcactatgttggtgatggtggtacgttta 134
Query: 1095 acggaatcaacgagaacaacacgatcatcgacacacacgggctgctgagcatccatatgc 1154
|| |||||||||||| | || ||||| ||| | || |||||| ||| ||||||||||
Sbjct: 135 tggggatcaacgagaacgatacaatcattgacgcccatgggctgatgactatccatatgc 194
Query: 1155 ctccttactacaactctatcatccgaggtgtctccacggtcatggtctcctactccagct 1214
|| |||| ||||| ||||||||| ||||||||||||| || ||| ||| ||||| ||||
Sbjct: 195 ctgcttattacaattctatcatcagaggtgtctccactgttatgacctcgtactctagct 254
Query: 1215 ggaacggagtgaagatgcacgcgaaccatttcctagtcacggattttctcaagaacaagc 1274
||||||| ||| |||||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 255 ggaacggcaagaaaatgcacgccaaccatttccttgtcactgattttctgaagaacaagc 314
Query: 1275 tcaagtttaggggttttgtgatttccgactgggagggcattgatcggatcactactcctc 1334
|||| ||| ||||||| |||||||| |||||| | |||||||||||||| |||| ||||
Sbjct: 315 tcaaatttcggggtttcgtgatttcagactggcaaggcattgatcggattactagccctc 374
Query: 1335 ctcacgccaactactcttactcaattgaggctggtgttggtgctggaattgacatgatca 1394
| || ||||| ||||| ||| |||||||||| |||||||| || |||||||||||||
Sbjct: 375 caggcgtgaactattcttattcagttgaggctggagttggtgccggtattgacatgatca 434
Query: 1395 tggttccattcaggtacacagaattcatcgacgacctgacgacacaagttcagaacaagg 1454
||||||| || |||||||||||||| || || ||||| |||||| |||||||
Sbjct: 435 tggttccttttgcctacacagaattcattgatgatctgacataccaagttaagaacaaca 494
Query: 1455 tcatccccatgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcacca 1514
|||||||||||||||||||| |||| || ||||||||||| || | || ||||||||||
Sbjct: 495 tcatccccatgagcagaatcaacgatgctgtctacaggattctcagggtgaagttcacca 554
Query: 1515 tggg 1518
||||
Sbjct: 555 tggg 558
>gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. vulgare cDNA clone HA06J20
3-PRIME, mRNA sequence
Length = 454
Score = 343 bits (173), Expect = 2e-092
Identities = 299/341 (87%)
Strand = Plus / Minus
Query: 1916 acgttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcg 1975
|||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct: 454 acgttcggcgacaacctgaacctgacgatccctgcgcccggcccctcggtgatccagaac 395
Query: 1976 gtgtgcggggccgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggag 2035
|||||| | || || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 394 gtgtgcaagagcgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggag 335
Query: 2036 ccgtacctgggcgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcag 2095
|||||| | ||| |||||||||| | || || ||||||||||| || |||||||| |||
Sbjct: 334 ccgtacatcagcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccag 275
Query: 2096 ggcgtggcggacgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtgg 2155
|||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct: 274 ggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtgg 215
Query: 2156 ttcaagtcggtggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttc 2215
|||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct: 214 ttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttc 155
Query: 2216 ccgttcggcttcggactcaccaccaagggcacgaagtgagt 2256
|| ||||| ||||| ||||||||| ||| || |||||||||
Sbjct: 154 cccttcgggttcggcctcaccaccgaggccaagaagtgagt 114
>gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. vulgare cDNA clone HR01L02
3-PRIME, mRNA sequence
Length = 457
Score = 339 bits (171), Expect = 3e-091
Identities = 297/339 (87%)
Strand = Plus / Minus
Query: 1918 gttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggt 1977
|||||||||||||||||||||||||||||| |||||||| || ||||||||| ||
Sbjct: 457 gttcggcgacaacctgaacctgacgatccctgcgcccggcccctcggtgatccagaacgt 398
Query: 1978 gtgcggggccgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggagcc 2037
|||| | || || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 397 gtgcaagagcgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggagcc 338
Query: 2038 gtacctgggcgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcaggg 2097
|||| | ||| |||||||||| | || || ||||||||||| || |||||||| |||||
Sbjct: 337 gtacatcagcgccatggacgcgttcgtcgccgcgtggctgcccggctcggagggccaggg 278
Query: 2098 cgtggcggacgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtggtt 2157
|||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct: 277 cgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggtt 218
Query: 2158 caagtcggtggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttccc 2217
|||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 217 caagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccc 158
Query: 2218 gttcggcttcggactcaccaccaagggcacgaagtgagt 2256
||||| ||||| ||||||||| ||| || |||||||||
Sbjct: 157 cttcgggttcggcctcaccaccgaggccaagaagtgagt 119
>gb|BF255596.2|BF255596 HVSMEf0007E15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0007E15f, mRNA sequence
Length = 857
Score = 331 bits (167), Expect = 7e-089
Identities = 450/543 (82%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 950 ccaaaggttgtccagtcactgacttcactcatctctggcctgcaaggtgacgctcctgcg 1009
||||||||||| |||||| |||| ||||||||||||| ||||||||||||| ||| ||
Sbjct: 18 ccaaaggttgttcagtcaatgaccacactcatctctggtctgcaaggtgacgttccggct 77
Query: 1010 gattccgcgggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagcac 1069
| ||| | ||||||||| || ||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 78 ggttctgagggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagcac 137
Query: 1070 tatgtcggtgatggtggaacgcataacggaatcaacgagaacaacacgatcatcgacaca 1129
||||| ||||||||||| ||| || || |||||||||||| || ||||| ||| |
Sbjct: 138 tatgttggtgatggtggtacgtttatggggatcaacgagaacggtacaatcattgacgcc 197
Query: 1130 cacgggctgctgagcatccatatgcctccttactacaactctatcatccgaggtgtctcc 1189
|| |||||| ||| |||||||||||| |||| ||||| ||||||||| |||| ||||||
Sbjct: 198 catgggctgatgactatccatatgcctgcttattacaattctatcatcagaggcgtctcc 257
Query: 1190 acggtcatggtctcctactccagctggaacggagtgaagatgcacgcgaaccatttccta 1249
|| || ||| ||| ||||| ||||||||||| ||| |||||||| |||||||||||
Sbjct: 258 actgttatgacctcgtactctagctggaacggcaagaaaatgcacgccaaccatttcctt 317
Query: 1250 gtcacggattttctcaagaacaagctcaagtttaggggttttgtgatttccgactgggag 1309
||||| |||||||| |||||||||||||| ||| ||||||| |||||||| |||||| |
Sbjct: 318 gtcactgattttctgaagaacaagctcaaattttggggtttcgtgatttcagactggcaa 377
Query: 1310 ggcattgatcggatcactactcctcctcacgccaactactcttactcaattgaggctggt 1369
|||||||||||||| |||| ||||| || ||||| ||||| ||| ||||||||||
Sbjct: 378 ggcattgatcggattactagccctccaggcgtgaactattcttattcagttgaggctgga 437
Query: 1370 gttggtgctggaattgacatgatcatggttccattcaggtacacagaattcatcgacgac 1429
|||||||| || |||||||||||||||||||| || |||||||| ||||| || ||
Sbjct: 438 gttggtgccggtattgacatgatcatggttccttttgcctacacagagttcattgatgat 497
Query: 1430 ctgac-gacacaagttcagaacaaggtcatccccatgagcagaatcgacgacgccgtcta 1488
||||| || ||||| ||||||| |||||||||||||||||||| |||| || |||||
Sbjct: 498 ctgacataccaaagttaagaacaacatcatccccatgagcagaatcaacgatgctgtcta 557
Query: 1489 cag 1491
|||
Sbjct: 558 cag 560
>gb|BQ468024.1|BQ468024 HR01L02r HR Hordeum vulgare subsp. vulgare cDNA clone HR01L02
5-PRIME, mRNA sequence
Length = 502
Score = 319 bits (161), Expect = 3e-085
Identities = 398/477 (83%)
Strand = Plus / Plus
Query: 1018 gggaaggccgtatgttgggggaagtaagaaggtcgctgcgtgcgcgaagcactatgtcgg 1077
||||||||| || ||||| |||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 25 gggaaggccatacgttggtggaagtaagaaggttgctgcatgcgcaaagcactatgttgg 84
Query: 1078 tgatggtggaacgcataacggaatcaacgagaacaacacgatcatcgacacacacgggct 1137
||||||||| ||| || || |||||||||||| | || ||||| ||| | || |||||
Sbjct: 85 tgatggtggtacgtttatggggatcaacgagaacgatacaatcattgacgcccatgggct 144
Query: 1138 gctgagcatccatatgcctccttactacaactctatcatccgaggtgtctccacggtcat 1197
| ||| |||||||||||| |||| ||||| ||||||||| ||||||||||||| || ||
Sbjct: 145 gatgactatccatatgcctgcttattacaattctatcatcagaggtgtctccactgttat 204
Query: 1198 ggtctcctactccagctggaacggagtgaagatgcacgcgaaccatttcctagtcacgga 1257
| ||| ||||| ||||||||||| ||| |||||||| ||||||||||| ||||| ||
Sbjct: 205 gacctcgtactctagctggaacggcaagaaaatgcacgccaaccatttccttgtcactga 264
Query: 1258 ttttctcaagaacaagctcaagtttaggggttttgtgatttccgactgggagggcattga 1317
|||||| |||||||||||||| ||| ||||||| |||||||| |||||| | ||||||||
Sbjct: 265 ttttctgaagaacaagctcaaatttcggggtttcgtgatttcagactggcaaggcattga 324
Query: 1318 tcggatcactactcctcctcacgccaactactcttactcaattgaggctggtgttggtgc 1377
|||||| |||| ||||| || ||||| ||||| ||| |||||||||| ||||||||
Sbjct: 325 tcggattactagccctccaggcgtgaactattcttattcagttgaggctggagttggtgc 384
Query: 1378 tggaattgacatgatcatggttccattcaggtacacagaattcatcgacgacctgacgac 1437
|| |||||||||||||||||||| || |||||||||||||| || || |||||
Sbjct: 385 cggtattgacatgatcatggttccttttgcctacacagaattcattgatgatctgacata 444
Query: 1438 acaagttcagaacaaggtcatccccatgagcagaatcgacgacgccgtctacaggat 1494
|||||| ||||||| |||||||||||||||||||| |||| || |||||||||||
Sbjct: 445 ccaagttaagaacaacatcatccccatgagcagaatcaacgatgctgtctacaggat 501
>gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08K03u 3', mRNA sequence
Length = 552
Score = 315 bits (159), Expect = 4e-084
Identities = 303/347 (87%), Gaps = 3/347 (0%)
Strand = Plus / Minus
Query: 1913 gagacgttc-ggcgacaacctgaa-cctgacgatcccggcgcccgggccgagcg-tgatc 1969
||||||||| |||||||||||||| |||||||||||| |||||||| || || |||||
Sbjct: 538 gagacgttccggcgacaacctgaaacctgacgatccctgcgcccggccccttcggtgatc 479
Query: 1970 cagtcggtgtgcggggccgccaagtgcgtggtggtcctcatctccggcaggccgctggtg 2029
||| |||||| | || || |||||||||||| ||||||||||||||||||||||||
Sbjct: 478 cagaacgtgtgcaagagcgtcaggtgcgtggtggtgctcatctccggcaggccgctggtg 419
Query: 2030 gtggagccgtacctgggcgacatggacgcgctggtggcggcgtggctgccagggtcggag 2089
|||||||||||| | ||| |||||||||| | || || ||||||||||| || ||||||
Sbjct: 418 gtggagccgtacatcagcgccatggacgcgttcgtcgccgcgtggctgcccggctcggag 359
Query: 2090 gggcagggcgtggcggacgtgctgttcggcgactacgggttcacggggaagctgccgcgg 2149
|| ||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 358 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 299
Query: 2150 acgtggttcaagtcggtggaccagctgcccatgaacgtgggcgacgcgcactacgacccg 2209
|||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 298 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 239
Query: 2210 ctcttcccgttcggcttcggactcaccaccaagggcacgaagtgagt 2256
|||||||| ||||| ||||| ||||||||| ||| || |||||||||
Sbjct: 238 ctcttccccttcgggttcggcctcaccaccgaggccaagaagtgagt 192
>gb|AL503553.1|AL503553 AL503553 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J07T 5', mRNA sequence
Length = 700
Score = 315 bits (159), Expect = 4e-084
Identities = 514/631 (81%), Gaps = 1/631 (0%)
Strand = Plus / Plus
Query: 1100 atcaacgagaacaacacgatcatcgacacacacgggctgctgagcatccatatgcctcct 1159
|||||||||||| | || ||||| ||| | || |||||| ||| |||||||||||| ||
Sbjct: 24 atcaacgagaacgatacaatcattgacgcccatgggctgatgactatccatatgcctgct 83
Query: 1160 tactacaactctatcatccgaggtgtctccacggtcatggtctcctactccagctggaac 1219
|| ||||| ||||||||| ||||||||||||| || ||| ||| ||||| |||||||||
Sbjct: 84 tattacaattctatcatcagaggtgtctccactgttatgacctcgtactctagctggaac 143
Query: 1220 ggagtgaagatgcacgcgaaccatttcctagtcacggattttctcaagaacaagctcaag 1279
|| ||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 144 ggcaagaaaatgcacgccaaccatttccttgtcactgattttctgaagaacaagctcaaa 203
Query: 1280 tttaggggttttgtgatttccgactgggagggcattgatcggatcactactcctcctcac 1339
||| ||||||| |||||||| |||||| | |||||||||||||| |||| ||||| |
Sbjct: 204 tttcggggtttcgtgatttcagactggcaaggcattgatcggattactagccctccaggc 263
Query: 1340 gccaactactcttactcaattgaggctggtgttggtgctggaattgacatgatcatggtt 1399
| ||||| ||||| ||| |||||||||| |||||||| || ||||||||||||||||||
Sbjct: 264 gtgaactattcttattcagttgaggctggagttggtgccggtattgacatgatcatggtt 323
Query: 1400 ccattcaggtacacagaattcatcgacgacctgacgacacaagttcagaacaaggtcatc 1459
|| || |||||||||||||| || || ||||| |||||| ||||||| |||||
Sbjct: 324 ccttttgcctacacagaattcattgatgatctgacataccaagttaagaacaacatcatc 383
Query: 1460 cccatgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggc 1519
||||||||||||||| |||| || ||||||||||| || | || ||||||||||||||
Sbjct: 384 cccatgagcagaatcaacgatgctgtctacaggattctcagggtgaagttcaccatgggt 443
Query: 1520 ctgttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacac 1579
|| || |||| ||| || | ||| | ||||||| || || ||||||||||| ||||||
Sbjct: 444 ctatttgagagcccctatgctgacccaagcctcgttggtgaactcgggaagcaggaacac 503
Query: 1580 cgggaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtcc 1639
|| || || || || || ||||||||||| || |||| | ||||| || || || ||
Sbjct: 504 cgtgatcttgctcgtgaggccgtcaggaagtcattggtgttgctgaaaaatggaaaatct 563
Query: 1640 tcctacgctccgttgctgcccctcccgaagaaggccggcaa-gatcctggtcgccggcag 1698
||| | |||| ||| |||| ||||| ||||||||||| || |||||| ||||| || ||
Sbjct: 564 gcctccactccattgttgcctctcccaaagaaggccggtaaggatcctcgtcgctggaag 623
Query: 1699 ccacgccaacgacctgggcaaccagtgcggg 1729
||||||| ||||| |||||||||||||||||
Sbjct: 624 ccacgccgacgacttgggcaaccagtgcggg 654
>gb|BM374213.2|BM374213 EBma03_SQ003_P16_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_P16 5', mRNA sequence
Length = 589
Score = 315 bits (159), Expect = 4e-084
Identities = 475/579 (82%), Gaps = 1/579 (0%)
Strand = Plus / Plus
Query: 1031 gttgggggaagtaagaaggtcgctgcgtgcgcgaagcactatgtcggtgatggtggaacg 1090
||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 8 gttggtggaagtaagaaggttgctgcatgcgcaaagcactatgttggtgatggtggtacg 67
Query: 1091 cataacggaatcaacgagaacaacacgatcatcgacacacacgggctgctgagcatccat 1150
|| || |||||||||||| | || ||||| ||| | || |||||| ||| ||||||
Sbjct: 68 tttatggggatcaacgagaacgatacaatcattgacgcccatgggctgatgactatccat 127
Query: 1151 atgcctccttactacaactctatcatccgaggtgtctccacggtcatggtctcctactcc 1210
|||||| |||| ||||| ||||||||| ||||||||||||| || ||| ||| |||||
Sbjct: 128 atgcctgcttattacaattctatcatcagaggtgtctccactgttatgacctcgtactct 187
Query: 1211 agctggaacggagtgaagatgcacgcgaaccatttcctagtcacggattttctcaagaac 1270
||||||||||| ||| |||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 188 agctggaacggcaagaaaatgcacgccaaccatttccttgtcactgattttctgaagaac 247
Query: 1271 aagctcaagtttaggggttttgtgatttccgactgggagggcattgatcggatcactact 1330
|||||||| ||| ||||||| |||||||| |||||| | |||||||||||||| ||||
Sbjct: 248 aagctcaaatttcggggtttcgtgatttcagactggcaaggcattgatcggattactagc 307
Query: 1331 cctcctcacgccaactactcttactcaattgaggctggtgttggtgctggaattgacatg 1390
||||| || ||||| ||||| ||| |||||||||| |||||||| || |||||||||
Sbjct: 308 cctccaggcgtgaactattcttattcagttgaggctggagttggtgccggtattgacatg 367
Query: 1391 atcatggttccattcaggtacacagaattcatcgacgacctgacgacacaagttcagaac 1450
||||||||||| || |||||||||||||| || || ||||| |||||| |||||
Sbjct: 368 atcatggttccttttgcctacacagaattcattgatgatctgacataccaagttaagaac 427
Query: 1451 aaggtcatccccatgagcagaatcgacgacgccgtctacaggatcct-tcgtgtcaagtt 1509
|| |||||||||||||||||||| |||| || ||||||||||| || | || |||||
Sbjct: 428 aacatcatccccatgagcagaatcaacgatgctgtctacaggattctcaggggtgaagtt 487
Query: 1510 caccatgggcctgttcgagaacccttaccccgactctagcctcgccggcgagctcgggaa 1569
||||||||| || || |||| ||| || | ||| | ||||||| || || ||||||||
Sbjct: 488 caccatgggtctatttgagagcccctatgctgacccaagcctcgttggtgaactcgggaa 547
Query: 1570 gcaagaacaccgggaactggcgcgcgaagccgtcaggaa 1608
||| |||||||| || || || || || |||||||||||
Sbjct: 548 gcaggaacaccgtgatcttgctcgtgaggccgtcaggaa 586
>gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05L24u 3',
mRNA sequence
Length = 496
Score = 309 bits (156), Expect = 3e-082
Identities = 237/264 (89%)
Strand = Plus / Minus
Query: 1993 gtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctgggcgacat 2052
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 474 gtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcagcgccat 415
Query: 2053 ggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgct 2112
||||||| | || || ||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct: 414 ggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccgacgtgct 355
Query: 2113 gttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggtggacca 2172
||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||
Sbjct: 354 gttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggcggacca 295
Query: 2173 gctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggcttcggact 2232
|||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 294 gctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggttcggcct 235
Query: 2233 caccaccaagggcacgaagtgagt 2256
||||||| ||| || |||||||||
Sbjct: 234 caccaccgaggccaagaagtgagt 211
>gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_P14 5', mRNA sequence
Length = 411
Score = 309 bits (156), Expect = 3e-082
Identities = 237/264 (89%)
Strand = Plus / Plus
Query: 1993 gtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctgggcgacat 2052
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 8 gtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcagcgccat 67
Query: 2053 ggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgct 2112
||||||| | || || ||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct: 68 ggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccgacgtgct 127
Query: 2113 gttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggtggacca 2172
||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||
Sbjct: 128 gttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggcggacca 187
Query: 2173 gctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggcttcggact 2232
|||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 188 gctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggttcggcct 247
Query: 2233 caccaccaagggcacgaagtgagt 2256
||||||| ||| || |||||||||
Sbjct: 248 caccaccgaggccaagaagtgagt 271
>gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. vulgare cDNA clone HA11D20
3-PRIME, mRNA sequence
Length = 439
Score = 309 bits (156), Expect = 3e-082
Identities = 237/264 (89%)
Strand = Plus / Minus
Query: 1993 gtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctgggcgacat 2052
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 382 gtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcagcgccat 323
Query: 2053 ggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgct 2112
||||||| | || || ||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct: 322 ggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccgacgtgct 263
Query: 2113 gttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggtggacca 2172
||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||
Sbjct: 262 gttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggcggacca 203
Query: 2173 gctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggcttcggact 2232
|||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||||| ||
Sbjct: 202 gctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcgggttcggcct 143
Query: 2233 caccaccaagggcacgaagtgagt 2256
||||||| ||| || |||||||||
Sbjct: 142 caccaccgaggccaagaagtgagt 119
>gb|AL507457.1|AL507457 AL507457 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05L24V 5',
mRNA sequence
Length = 700
Score = 301 bits (152), Expect = 6e-080
Identities = 405/488 (82%), Gaps = 1/488 (0%)
Strand = Plus / Plus
Query: 419 ctcatgttctgcctgctagcgctggggagagcggagtacctcaagtacaaggacccaaag 478
|||||||||||| || ||| |||| || ||||| || |||||||||||||| || |||
Sbjct: 153 ctcatgttctgcttggcggcgttgggaagcgcggattatctcaagtacaaggatccgaag 212
Query: 479 cagcccgtcgctgttcgcatcaaggacctgctgggtcggatgactctcgccgaaaagatc 538
||||| | | |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 213 cagcctcttggcgttcgcatcaaggatctgcttggtcggatgactctcgctgaaaagata 272
Query: 539 ggccagatgacgcagatcgagagggaaaacgccacggccgacgcgctggccaaatacttc 598
||||||||||| |||||||||||||| || |||||||| || || || |||| ||||||
Sbjct: 273 ggccagatgacccagatcgagagggagaatgccacggcagaggccatgtccaagtacttc 332
Query: 599 ataggtagcgtgctgagcggcggaggcagcgtgcctgctcctcaggcgtctgctcaggct 658
||||||||||| ||||| || |||||||| |||||| ||||||| || || ||| ||||
Sbjct: 333 ataggtagcgtactgagtggtggaggcagtgtgccttctcctcaagcatccgctgcggct 392
Query: 659 tgggccgccatggtgaccgagatgcagaagggcgctctttctacgcgtctgggtataccg 718
||| | ||||||| || ||||| |||||||| |||||||| || || || || |||
Sbjct: 393 tggcagtcgatggtgaatgaaatgcaaaagggcgccctttctacccgcctaggcattccg 452
Query: 719 atcatctacggtatcgatgcagtgcatgggcacaacaacgtctacaaagctactattttc 778
|| ||||||||||| ||||| ||||| || ||||||||||| ||||||||||| || |||
Sbjct: 453 atgatctacggtattgatgctgtgcacggtcacaacaacgtgtacaaagctaccatcttc 512
Query: 779 cctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaa 838
|| || || || || || || ||||||||||||||| | || ||||| || ||||||
Sbjct: 513 ccacataatgttggcctcggtgctaccagggaccctatgttggtaaagaggataggagaa 572
Query: 839 gcaactgctcttgaagttagagctactggaattccttacgcctttgctccc-tgtatagc 897
||||||||||||||||||||||| || |||||||||||||| ||||||||| ||||| ||
Sbjct: 573 gcaactgctcttgaagttagagcaacaggaattccttacgcttttgctcccgtgtattgc 632
Query: 898 ggtctgta 905
||| ||||
Sbjct: 633 ggtgtgta 640
>gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. vulgare cDNA clone HA03G04
3-PRIME, mRNA sequence
Length = 456
Score = 299 bits (151), Expect = 2e-079
Identities = 277/319 (86%)
Strand = Plus / Minus
Query: 1918 gttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggt 1977
|||||||||||||||||||||||||||||| |||||||| || ||||||||| ||
Sbjct: 456 gttcggcgacaacctgaacctgacgatccctgcgcccggcccctcggtgatccagaacgt 397
Query: 1978 gtgcggggccgccaagtgcgtggtggtcctcatctccggcaggccgctggtggtggagcc 2037
|||| | || || |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 396 gtgcaagagcgtcaggtgcgtggtggtgctcatctccggcaggccgctggtggtggaacc 337
Query: 2038 gtacctgggcgacatggacgcgctggtggcggcgtggctgccagggtcggaggggcaggg 2097
|||| | ||| |||||||||| | || || ||||||||||| || |||||||| |||||
Sbjct: 336 gtacatcagcgccatggacgcgtttgtcgccgcgtggctgcccggctcggagggccaggg 277
Query: 2098 cgtggcggacgtgctgttcggcgactacgggttcacggggaagctgccgcggacgtggtt 2157
|||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct: 276 cgtggccgacgtgctgttcggcgactacgggttttccgggaagctggcgcggacgtggtt 217
Query: 2158 caagtcggtggaccagctgcccatgaacgtgggcgacgcgcactacgacccgctcttccc 2217
|||||||| |||||||||||| |||||||| |||||| ||||||||||||||| |||||
Sbjct: 216 caagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccgcttttccc 157
Query: 2218 gttcggcttcggactcacc 2236
||||| ||||| ||||||
Sbjct: 156 cttcgggttcggcctcacc 138
>gb|BI956426.1|BI956426 HVSMEn0003E13f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0003E13f,
mRNA sequence
Length = 453
Score = 295 bits (149), Expect = 4e-078
Identities = 235/264 (89%)
Strand = Plus / Minus
Query: 1993 gtgcgtggtggtcctcatctccggcaggccgctggtggtggagccgtacctgggcgacat 2052
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 412 gtgcgtggtggtgctcatctccggcaggccgctggtggtggagccgtacatcagcgccat 353
Query: 2053 ggacgcgctggtggcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgct 2112
||||||| | || || ||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct: 352 ggacgcgttcgtcgccgcgtggctgcccggctcggagggccagggcgtggccgacgtgct 293
Query: 2113 gttcggcgactacgggttcacggggaagctgccgcggacgtggttcaagtcggtggacca 2172
||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||
Sbjct: 292 gttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagtcggcggacca 233
Query: 2173 gctgcccatgaacgtgggcgacgcgcactacgacccgctcttcccgttcggcttcggact 2232
|||||| |||||||| |||||| ||| ||||||||||||||||| ||||| || || ||
Sbjct: 232 gctgccgatgaacgtcggcgacaagcantacgacccgctcttccccttcgggttgggcct 173
Query: 2233 caccaccaagggcacgaagtgagt 2256
||||||| ||| || |||||||||
Sbjct: 172 caccaccgaggccaagaagtgagt 149
>gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_J19 5', mRNA sequence
Length = 370
Score = 291 bits (147), Expect = 6e-077
Identities = 225/251 (89%)
Strand = Plus / Plus
Query: 2006 ctcatctccggcaggccgctggtggtggagccgtacctgggcgacatggacgcgctggtg 2065
|||||||||||||||||||||||||||||||||||| | ||| |||||||||| | ||
Sbjct: 1 ctcatctccggcaggccgctggtggtggagccgtacatcagcgccatggacgcgttcgtc 60
Query: 2066 gcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgctgttcggcgactac 2125
|| ||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 61 gccgcgtggctgcccggctcggagggccagggcgtggccgacgtgctgttcggcgactac 120
Query: 2126 gggttcacggggaagctgccgcggacgtggttcaagtcggtggaccagctgcccatgaac 2185
|||||| | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 121 gggttctccgggaagctggcgcggacgtggttcaagtcggcggaccagctgccgatgaac 180
Query: 2186 gtgggcgacgcgcactacgacccgctcttcccgttcggcttcggactcaccaccaagggc 2245
|| |||||| ||||||||||||||||||||| ||||| ||||| ||||||||| ||| |
Sbjct: 181 gtcggcgacaagcactacgacccgctcttccccttcgggttcggcctcaccaccgaggcc 240
Query: 2246 acgaagtgagt 2256
| |||||||||
Sbjct: 241 aagaagtgagt 251
>gb|BU977300.1|BU977300 HA11D01r HA Hordeum vulgare subsp. vulgare cDNA clone HA11D01
5-PRIME, mRNA sequence
Length = 499
Score = 291 bits (147), Expect = 6e-077
Identities = 387/467 (82%)
Strand = Plus / Plus
Query: 1052 gctgcgtgcgcgaagcactatgtcggtgatggtggaacgcataacggaatcaacgagaac 1111
||||| ||||| ||||||||||| ||||||||||| ||| || || ||||||||||||
Sbjct: 11 gctgcatgcgcaaagcactatgttggtgatggtggtacgtttatggggatcaacgagaac 70
Query: 1112 aacacgatcatcgacacacacgggctgctgagcatccatatgcctccttactacaactct 1171
| || ||||| ||| | || |||||| ||| |||||||||||| |||| ||||| |||
Sbjct: 71 gatacaatcattgacgcccatgggctgatgactatccatatgcctgcttattacaattct 130
Query: 1172 atcatccgaggtgtctccacggtcatggtctcctactccagctggaacggagtgaagatg 1231
|||||| ||||||||||||| || ||| ||| ||||| ||||||||||| ||| |||
Sbjct: 131 atcatcagaggtgtctccactgttatgacctcgtactctagctggaacggcaagaaaatg 190
Query: 1232 cacgcgaaccatttcctagtcacggattttctcaagaacaagctcaagtttaggggtttt 1291
||||| ||||||||||| ||||| |||||||| |||||||||||||| ||| |||||||
Sbjct: 191 cacgccaaccatttccttgtcactgattttctgaagaacaagctcaaatttcggggtttc 250
Query: 1292 gtgatttccgactgggagggcattgatcggatcactactcctcctcacgccaactactct 1351
|||||||| |||||| | |||||||||||||| |||| ||||| || ||||| |||
Sbjct: 251 gtgatttcagactggcaaggcattgatcggattactagccctccaggcgtgaactattct 310
Query: 1352 tactcaattgaggctggtgttggtgctggaattgacatgatcatggttccattcaggtac 1411
|| ||| |||||||||| |||||||| || |||||||||||||||||||| || |||
Sbjct: 311 tattcagttgaggctggagttggtgccggtattgacatgatcatggttccttttgcctac 370
Query: 1412 acagaattcatcgacgacctgacgacacaagttcagaacaaggtcatccccatgagcaga 1471
||||||||||| || || ||||| |||||| ||||||| |||||||||||||||||
Sbjct: 371 acagaattcattgatgatctgacataccaagttaagaacaacatcatccccatgagcaga 430
Query: 1472 atcgacgacgccgtctacaggatccttcgtgtcaagttcaccatggg 1518
||| |||| || ||||||||||| || | || ||||||||||||||
Sbjct: 431 atcaacgatgctgtctacaggattctcagggtgaagttcaccatggg 477
>gb|CX662599.1|CX662599 EST 422 Expressed sequences from Barley Hordeum vulgare subsp.
vulgare cDNA clone P422 5', mRNA sequence
Length = 339
Score = 291 bits (147), Expect = 6e-077
Identities = 288/335 (85%)
Strand = Plus / Plus
Query: 722 atctacggtatcgatgcagtgcatgggcacaacaacgtctacaaagctactattttccct 781
||||||||||| ||||| ||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 2 atctacggtattgatgctgtgcacggtcacaacaacgtgtacaaagctaccatcttccca 61
Query: 782 cacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaagca 841
|| || || || || || ||||||||||||||| | || ||||| || |||||||||
Sbjct: 62 cataatgttggcctcggtgctaccagggaccctatgttggtaaagaggataggagaagca 121
Query: 842 actgctcttgaagttagagctactggaattccttacgcctttgctccctgtatagcggtc 901
|||||||||||||||||||| || |||||||||||||| |||||||| ||||| |||||
Sbjct: 122 actgctcttgaagttagagcaacaggaattccttacgcttttgctccgtgtattgcggtg 181
Query: 902 tgtagagatccaagatggggacgctgctatgagagctacagtgaggatccaaaggttgtc 961
|||||||| ||||||||||||||||||||||| |||||||| || || ||||||||||||
Sbjct: 182 tgtagagacccaagatggggacgctgctatgaaagctacagcgaagacccaaaggttgtc 241
Query: 962 cagtcactgacttcactcatctctggcctgcaaggtgacgctcctgcggattccgcggga 1021
|||||| |||| ||||||||||||| ||||||||||||| ||| || | ||| | ||||
Sbjct: 242 cagtcaatgaccacactcatctctggtctgcaaggtgacgttccggctggttctgaggga 301
Query: 1022 aggccgtatgttgggggaagtaagaaggtcgctgc 1056
||||| || ||||| |||||||||||||| |||||
Sbjct: 302 aggccatacgttggtggaagtaagaaggttgctgc 336
>gb|BU997026.1|BU997026 HI06K15r HI Hordeum vulgare subsp. vulgare cDNA clone HI06K15
5-PRIME, mRNA sequence
Length = 655
Score = 270 bits (136), Expect = 2e-070
Identities = 373/452 (82%)
Strand = Plus / Plus
Query: 419 ctcatgttctgcctgctagcgctggggagagcggagtacctcaagtacaaggacccaaag 478
|||||||||||| || ||| |||| || ||||| || |||||||||||||| || |||
Sbjct: 204 ctcatgttctgcttggcggcgttgggaagcgcggattatctcaagtacaaggatccgaag 263
Query: 479 cagcccgtcgctgttcgcatcaaggacctgctgggtcggatgactctcgccgaaaagatc 538
||||| | | |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 264 cagcctcttggcgttcgcatcaaggatctgcttggtcggatgactctcgctgaaaagata 323
Query: 539 ggccagatgacgcagatcgagagggaaaacgccacggccgacgcgctggccaaatacttc 598
||||||||||| |||||||||||||| || |||||||| || || || |||| ||||||
Sbjct: 324 ggccagatgacccagatcgagagggagaatgccacggcagaggccatgtccaagtacttc 383
Query: 599 ataggtagcgtgctgagcggcggaggcagcgtgcctgctcctcaggcgtctgctcaggct 658
||||||||||| ||||| || |||||||| |||||| ||||||| || || ||| ||||
Sbjct: 384 ataggtagcgtactgagtggtggaggcagtgtgccttctcctcaagcatccgctgcggct 443
Query: 659 tgggccgccatggtgaccgagatgcagaagggcgctctttctacgcgtctgggtataccg 718
||| | ||||||| || ||||| |||||||| |||||||| || || || || |||
Sbjct: 444 tggcagtcgatggtgaatgaaatgcaaaagggcgccctttctacccgcctaggcattccg 503
Query: 719 atcatctacggtatcgatgcagtgcatgggcacaacaacgtctacaaagctactattttc 778
|| ||||||||||| ||||| ||||| || ||||||||||| ||||||||||| || |||
Sbjct: 504 atgatctacggtattgatgctgtgcacggtcacaacaacgtgtacaaagctaccatcttc 563
Query: 779 cctcacaacgtcgggcttggagctaccagggaccctgacctcgttaagagaattggagaa 838
|| || || || || || || ||||||||||||||| | || ||||| || ||||||
Sbjct: 564 ccacataatgttggcctcggtgctaccagggaccctatgttggtaaagaggataggagaa 623
Query: 839 gcaactgctcttgaagttagagctactggaat 870
||||||||||||||||||||||| || |||||
Sbjct: 624 gcaactgctcttgaagttagagcaacaggaat 655
>gb|CA027301.1|CA027301 HZ58I10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58I10
5-PRIME, mRNA sequence
Length = 407
Score = 270 bits (136), Expect = 2e-070
Identities = 331/396 (83%)
Strand = Plus / Plus
Query: 499 caaggacctgctgggtcggatgactctcgccgaaaagatcggccagatgacgcagatcga 558
|||||| ||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 11 caaggatctgcttggtcggatgactctcgctgaaaagataggccagatgacccagatcga 70
Query: 559 gagggaaaacgccacggccgacgcgctggccaaatacttcataggtagcgtgctgagcgg 618
|||||| || |||||||| || || || |||| ||||||||||||||||| ||||| ||
Sbjct: 71 gagggagaatgccacggcagaggccatgtccaagtacttcataggtagcgtactgagtgg 130
Query: 619 cggaggcagcgtgcctgctcctcaggcgtctgctcaggcttgggccgccatggtgaccga 678
|||||||| |||||| ||||||| || || ||| ||||||| | ||||||| ||
Sbjct: 131 tggaggcagtgtgccttctcctcaagcatccgctgcggcttggcagtcgatggtgaatga 190
Query: 679 gatgcagaagggcgctctttctacgcgtctgggtataccgatcatctacggtatcgatgc 738
||||| |||||||| |||||||| || || || || ||||| ||||||||||| |||||
Sbjct: 191 aatgcaaaagggcgccctttctacccgcctaggcattccgatgatctacggtattgatgc 250
Query: 739 agtgcatgggcacaacaacgtctacaaagctactattttccctcacaacgtcgggcttgg 798
||||| || ||||||||||| ||||||||||| || ||||| || || || || || ||
Sbjct: 251 tgtgcacggtcacaacaacgtgtacaaagctaccatcttcccacataatgttggcctcgg 310
Query: 799 agctaccagggaccctgacctcgttaagagaattggagaagcaactgctcttgaagttag 858
||||||||||||||| | || ||||| || ||||||||||||||||||||||||||
Sbjct: 311 tgctaccagggaccctatgttggtaaagaggataggagaagcaactgctcttgaagttag 370
Query: 859 agctactggaattccttacgcctttgctccctgtat 894
||| || |||||||||||||| |||||||| |||||
Sbjct: 371 agcaacaggaattccttacgcttttgctccgtgtat 406
>gb|BQ765660.1|BQ765660 EBro03_SQ007_F19_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_F19 5', mRNA sequence
Length = 371
Score = 266 bits (134), Expect = 3e-069
Identities = 303/357 (84%), Gaps = 3/357 (0%)
Strand = Plus / Plus
Query: 1769 actgccggcacgacgatcctctccgggatcgaggccaccgtggaccccagcacgcaggtg 1828
|||||||| ||||||||||| || | |||| || ||||||| |||||||||||| |||||
Sbjct: 15 actgccgggacgacgatcctttcggcgatcaagtccaccgtcgaccccagcacggaggtg 74
Query: 1829 gtgtactcggagagcccggacagcggcgt-gctggc--cgacaagtacgactacgcgatc 1885
|| | ||| |||| ||| ||||||| || | || | || ||||||||||||||| |||
Sbjct: 75 gtcttctcagagaaccctgacagcgccgccgttgacagcggcaagtacgactacgccatc 134
Query: 1886 gtggtggtcggggagccgccatacgcggagacgttcggcgacaacctgaacctgacgatc 1945
||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 135 gtggtggtcggcgagccaccgtacgctgagacgttcggcgacaacctgaacctgacgatc 194
Query: 1946 ccggcgcccgggccgagcgtgatccagtcggtgtgcggggccgccaagtgcgtggtggtc 2005
|| |||||||| || ||||||||| |||||| | || || ||||||||||||
Sbjct: 195 cctgcgcccggcccctcggtgatccagaacgtgtgcaagagcgtcaggtgcgtggtggtg 254
Query: 2006 ctcatctccggcaggccgctggtggtggagccgtacctgggcgacatggacgcgctggtg 2065
|||||||||||||||||||||||||||||||||||| | ||| |||||||||| | ||
Sbjct: 255 ctcatctccggcaggccgctggtggtggagccgtacatcagcgccatggacgcgttcgtc 314
Query: 2066 gcggcgtggctgccagggtcggaggggcagggcgtggcggacgtgctgttcggcgac 2122
|| ||||||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 315 gccgcgtggctgcccggctcggagggccagggcgtggccgacgtgctgttcggcgac 371
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 275,173
Number of Sequences: 312970
Number of extensions: 275173
Number of successful extensions: 77895
Number of sequences better than 0.5: 123
Number of HSP's better than 0.5 without gapping: 122
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77417
Number of HSP's gapped (non-prelim): 378
length of query: 2611
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2591
effective length of database: 168,875,139
effective search space: 437555485149
effective search space used: 437555485149
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)