BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH10g11.yg.2.1
         (632 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BJ462458.1|BJ462458  BJ462458 K. Sato unpublished cDNA li...   212   1e-053
gb|AY177665.1|  Hordeum vulgare subsp. vulgare putative call...    62   2e-008
gb|AV923029.1|AV923029  AV923029 K. Sato unpublished cDNA li...    50   9e-005
gb|AV934137.1|AV934137  AV934137 K. Sato unpublished cDNA li...    40   0.086
gb|BJ470174.1|BJ470174  BJ470174 K. Sato unpublished cDNA li...    40   0.086

>gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags28g06 5', mRNA sequence
          Length = 666

 Score =  212 bits (107), Expect = 1e-053
 Identities = 152/167 (91%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
           ||||| |||||||| || |||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 193 ttgaatccagcaaagatatcctcactgatgttgattactcttgatgctttactaatacca 134

                                                                       
Query: 65  cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
           ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || 
Sbjct: 133 cctcggcccaagaaccaaagacgatcaaacacatctgggtggccataatgcattctaacc 74

                                                          
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgt 171
           || ||||| | ||| ||||| ||||||||||||||||||||||||||
Sbjct: 73  ttgagtgggttagctagaactcgctgccccagagtgacaaaacttgt 27



>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
            complete cds
          Length = 6180

 Score = 61.9 bits (31), Expect = 2e-008
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 88   atcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacg 147
            |||||| || |||||||| |||||||||||||| ||||| ||||||| ||  ||||||||
Sbjct: 4271 atcaaacacgtctgggtgaccataatgcattctcactttcagtggattagaaagaacacg 4212

               
Query: 148  ctg 150
            |||
Sbjct: 4211 ctg 4209



>gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd3g22 5', mRNA sequence
          Length = 611

 Score = 50.1 bits (25), Expect = 9e-005
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 143 acacgctgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaa 202
           |||||||| || | ||| |||||||||||||| |||   ||||||||||| ||||| |||
Sbjct: 126 acacgctgtccaatagtcacaaaacttgtctcttggtttgacatgaaccacgcaagcgaa 67

                
Query: 203 gaaac 207
           |||||
Sbjct: 66  gaaac 62




 Score = 40.1 bits (20), Expect = 0.086
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 5   ttgaaaccagcaaaaatgtcctcactaa 32
           ||||| |||||||| |||||||||||||
Sbjct: 264 ttgaatccagcaaatatgtcctcactaa 237



>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
          heading stage top three leaves Hordeum vulgare subsp.
          vulgare cDNA clone baal11c09 5', mRNA sequence
          Length = 589

 Score = 40.1 bits (20), Expect = 0.086
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 5  ttgaaaccagcaaaaatgtcctcactaa 32
          ||||| |||||||| |||||||||||||
Sbjct: 35 ttgaatccagcaaatatgtcctcactaa 8



>gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
          heading stage top three leaves Hordeum vulgare subsp.
          vulgare cDNA clone baal15l17 5', mRNA sequence
          Length = 537

 Score = 40.1 bits (20), Expect = 0.086
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 5  ttgaaaccagcaaaaatgtcctcactaa 32
          ||||| |||||||| |||||||||||||
Sbjct: 46 ttgaatccagcaaatatgtcctcactaa 19



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,647
Number of Sequences: 312970
Number of extensions: 44647
Number of successful extensions: 11587
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11578
Number of HSP's gapped (non-prelim): 9
length of query: 632
length of database: 175,134,539
effective HSP length: 19
effective length of query: 613
effective length of database: 169,188,109
effective search space: 103712310817
effective search space used: 103712310817
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)