BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG38e04.yg.2.1
(690 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA li... 349 8e-095
gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA li... 349 8e-095
gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. v... 333 4e-090
gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedl... 276 9e-073
gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no... 214 3e-054
gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedl... 204 3e-051
gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. v... 204 3e-051
gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DA... 196 7e-049
gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA li... 127 5e-028
gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA li... 121 3e-026
gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedl... 107 5e-022
gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa... 94 7e-018
gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA li... 92 3e-017
gb|BU999201.1|BU999201 HI13K20r HI Hordeum vulgare subsp. v... 82 3e-014
gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. v... 62 3e-008
gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA li... 58 4e-007
gb|AV926708.1|AV926708 AV926708 K. Sato unpublished cDNA li... 58 4e-007
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 50 1e-004
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 50 1e-004
gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. v... 50 1e-004
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 50 1e-004
gb|BM928837.1|BM928837 LP10011 Lemma/palea-enriched cDNA li... 38 0.37
>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 5', mRNA sequence
Length = 604
Score = 349 bits (176), Expect = 8e-095
Identities = 452/545 (82%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaata 99
|||||||| |||||||| ||||||||||||||||| |||||||| || | ||||| |||
Sbjct: 563 aggggctcgtgctctttctcccaccatgactcccaacttttctccggcgaaacaccgata 504
Query: 100 cctccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccac 159
|| || || |||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 503 cccccgcggttgctgatccacttgttccagtcagtccagtcatccacaatcttctgccac 444
Query: 160 tcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccac 219
|| || |||||||| ||||||||||| || ||||||||||| || | ||||||||||||
Sbjct: 443 tcgaacccagaagggttgaacaggaacggcgcaaagagccaggtaacgaccatgaaccac 384
Query: 220 atggatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttca 279
||||| | ||| ||||||||||| | || || |||| || ||||| || || || |||
Sbjct: 383 atggagaaggttatgaagatgtacgcgatggctcctcggtacgactgcccgaagatctca 324
Query: 280 tacacaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagt 339
|||| | || | ||||||| ||| | ||||||||| |||||||| || || || ||
Sbjct: 323 aacacgataagcaagatcatcaactcgatgcccttgacgaaatggctccgcgagtacagc 264
Query: 340 cgatagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtat 399
||||||||||| || || ||||||||||||||||| || ||||||||||| ||||| ||
Sbjct: 263 cgatagttctcggcgaacttggcatggaacaccacgaatccacgtccagtagctctatac 204
Query: 400 tccgctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaat 459
|| ||||||||||| || | |||| |||||||||||||||| || ||||| | ||||||
Sbjct: 203 tcagctcctccatgtagcagcgtctttccgtagtagtgagtcttggttccgagggagaat 144
Query: 460 gtgaagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctg 519
|||||||| || || || ||||||||||||||||| | ||| || |||||||| || |||
Sbjct: 143 gtgaagaagacggatgctaactgaagctgcatcagcacaaagtcgctcaatgcggtcctg 84
Query: 520 aatcctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngc 579
|| |||||||||| ||| || ||||||||||| || || |||||||| || ||| | ||
Sbjct: 83 aaccctctctccagaccaatctccatcatcatagggagtgccatcaagaagccaagctgc 24
Query: 580 acaaa 584
|||||
Sbjct: 23 acaaa 19
>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 5', mRNA sequence
Length = 614
Score = 349 bits (176), Expect = 8e-095
Identities = 452/545 (82%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaata 99
|||||||| |||||||| ||||||||||||||||| |||||||| || | ||||| |||
Sbjct: 574 aggggctcgtgctctttctcccaccatgactcccaacttttctccggcgaaacaccgata 515
Query: 100 cctccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccac 159
|| || || |||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 514 cccccgcggttgctgatccacttgttccagtcagtccagtcatccacaatcttctgccac 455
Query: 160 tcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccac 219
|| || |||||||| ||||||||||| || ||||||||||| || | ||||||||||||
Sbjct: 454 tcgaacccagaagggttgaacaggaacggcgcaaagagccaggtaacgaccatgaaccac 395
Query: 220 atggatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttca 279
||||| | ||| ||||||||||| | || || |||| || ||||| || || || |||
Sbjct: 394 atggagaaggttatgaagatgtacgcgatggctcctcggtacgactgcccgaagatctca 335
Query: 280 tacacaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagt 339
|||| | || | ||||||| ||| | ||||||||| |||||||| || || || ||
Sbjct: 334 aacacgataagcaagatcatcaactcgatgcccttgacgaaatggctccgcgagtacagc 275
Query: 340 cgatagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtat 399
||||||||||| || || ||||||||||||||||| || ||||||||||| ||||| ||
Sbjct: 274 cgatagttctcggcgaacttggcatggaacaccacgaatccacgtccagtagctctatac 215
Query: 400 tccgctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaat 459
|| ||||||||||| || | |||| |||||||||||||||| || ||||| | ||||||
Sbjct: 214 tcagctcctccatgtagcagcgtctttccgtagtagtgagtcttggttccgagggagaat 155
Query: 460 gtgaagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctg 519
|||||||| || || || ||||||||||||||||| | ||| || |||||||| || |||
Sbjct: 154 gtgaagaagacggatgctaactgaagctgcatcagcacaaagtcgctcaatgcggtcctg 95
Query: 520 aatcctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngc 579
|| |||||||||| ||| || ||||||||||| || || |||||||| || ||| | ||
Sbjct: 94 aaccctctctccagaccaatctccatcatcatagggagtgccatcaagaagccaagctgc 35
Query: 580 acaaa 584
|||||
Sbjct: 34 acaaa 30
>gb|CA018258.1|CA018258 HV08B15r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B15
5-PRIME, mRNA sequence
Length = 654
Score = 333 bits (168), Expect = 4e-090
Identities = 282/320 (88%)
Strand = Plus / Minus
Query: 22 cgcttcccagagcaacgaaggggctcctgctctttttcccaccatgactcccagcttttc 81
|||||||||||| ||||| || |||||||||| |||||||| || ||||||||||||
Sbjct: 330 cgcttcccagagtgccgaagaggtccctgctctttgtcccaccacgattcccagcttttc 271
Query: 82 tctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtca 141
||||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct: 270 tctggcgccacaccaatacctccacggttactgatccacttgttccaatcagtccagtcg 211
Query: 142 tccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaa 201
|| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 210 tctacaatcttctgccactcaaatccagaaggattgaacaggaagggagcaaagagccag 151
Query: 202 gtgcccaccatgaaccacatggatacggtgatgaagatgtaagttatagcccctctatat 261
||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 150 gtgcccaccataaaccacatggaaacagtgatgaagatgtaagtgatagctcctctgtac 91
Query: 262 gactgaccaaatatttcatacacaactagtagaatcatcagctcaaggcccttgacaaaa 321
| ||| || || ||||||||||| || || |||||||||||||||| ||||| || |||
Sbjct: 90 gtctgtccgaaaatttcatacacgacaagcagaatcatcagctcaatacccttcacgaaa 31
Query: 322 tggctgcgggaataaagtcg 341
|||||||| ||||| |||||
Sbjct: 30 tggctgcgagaatacagtcg 11
>gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012I18f, mRNA sequence
Length = 762
Score = 276 bits (139), Expect = 9e-073
Identities = 376/455 (82%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaata 99
|||||||| |||||||| ||||||||||||||||| |||||||| || | ||||| |||
Sbjct: 457 aggggctcgtgctctttctcccaccatgactcccaacttttctccggcggaacaccgata 398
Query: 100 cctccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccac 159
|| || || ||| |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 397 cccccgcggttggtgatccacttgttccagtcagtccagtcatccacaatcttctgccac 338
Query: 160 tcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccac 219
|| || |||||||| ||||||||||| || ||||||||||| || | ||||||||||||
Sbjct: 337 tcgaacccagaagggttgaacaggaacggcgcaaagagccaggtaacgaccatgaaccac 278
Query: 220 atggatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttca 279
||||| | ||| ||||||||||| | || || |||| || ||||| || || || |||
Sbjct: 277 atggagaaggttatgaagatgtacgcgatggctcctcggtacgactgcccgaagatctca 218
Query: 280 tacacaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagt 339
|||| | || | ||||||| ||| | ||||||||| |||||||| || || || ||
Sbjct: 217 aacacgataagcaagatcatcaactcgatgcccttgacgaaatggctccgcgagtacagc 158
Query: 340 cgatagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtat 399
||||||||||| || || ||||||||||||||||| || ||||||||||| ||||| ||
Sbjct: 157 cgatagttctcggcgaacttggcatggaacaccacgaatccacgtccagtagctctatac 98
Query: 400 tccgctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaat 459
|| ||||||||||| || | |||| ||||||| ||||||| || ||||| | ||||||
Sbjct: 97 tcagctcctccatgtagcagcgtctttccgtaccagtgagtcttggttccgagggagaat 38
Query: 460 gtgaagaaaacagaggccaactgaagctgcatcag 494
||||| || || || || |||||||||||||||||
Sbjct: 37 gtgaacaagacggatgctaactgaagctgcatcag 3
>gb|BM374437.2|BM374437 EBpi03_SQ003_J24_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_J24 5', mRNA sequence
Length = 573
Score = 214 bits (108), Expect = 3e-054
Identities = 339/417 (81%)
Strand = Plus / Minus
Query: 168 agaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatggatac 227
|||||| ||||||||||| || ||||||||||| || | ||||||||||||||||| |
Sbjct: 573 agaagggttgaacaggaacggcgcaaagagccaggtaacgaccatgaaccacatggagaa 514
Query: 228 ggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatacacaac 287
||| ||||||||||| | || || |||| || ||||| || || || ||| |||| |
Sbjct: 513 ggttatgaagatgtacgcgatggctcctcggtacgactgcccgaagatctcaaacacgat 454
Query: 288 tagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagtt 347
|| | ||||||| ||| | ||||||||| |||||||| || || || || ||||||||
Sbjct: 453 aagcaagatcatcaactcgatgcccttgacgaaatggctccgcgagtacagccgatagtt 394
Query: 348 ctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcc 407
||| || || ||||||||||||||||| || ||||||||||| ||||| || || |||||
Sbjct: 393 ctcggcgaacttggcatggaacaccacgaatccacgtccagtagctctatactcagctcc 334
Query: 408 tccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtgaagaa 467
|||||| || | |||| |||||||||||||||| || ||||| | ||||||||||||||
Sbjct: 333 tccatgtagcagcgtctttccgtagtagtgagtcttggttccgagggagaatgtgaagaa 274
Query: 468 aacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaatcctct 527
|| || || ||||||||||||||||| | ||| || |||||||| || ||||| |||||
Sbjct: 273 gacggatgctaactgaagctgcatcagcacaaagtcgctcaatgcggtcctgaaccctct 214
Query: 528 ctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcacaaa 584
||||| ||| || ||||||||||| || || |||||||| || ||| | |||||||
Sbjct: 213 ctccagaccaatctccatcatcatagggagtgccatcaagaagccaagctgcacaaa 157
>gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004D01f, mRNA sequence
Length = 765
Score = 204 bits (103), Expect = 3e-051
Identities = 178/203 (87%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaata 99
|||||||| |||||||| ||||||||||||||||| |||||||| || | ||||| |||
Sbjct: 224 aggggctcgtgctctttctcccaccatgactcccaacttttctccggcgaaacaccgata 165
Query: 100 cctccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccac 159
|| || || |||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 164 cccccgcggttgctgatccacttgttccagtcagtccagtcatccacaatcttctgccac 105
Query: 160 tcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccac 219
|| || |||||||| ||||||||||| || ||||||||||| || | ||||||||||||
Sbjct: 104 tcgaacccagaagggttgaacaggaacggcgcaaagagccaggtaacgaccatgaaccac 45
Query: 220 atggatacggtgatgaagatgta 242
||||| | ||| |||||||||||
Sbjct: 44 atggagaaggttatgaagatgta 22
>gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57M12
5-PRIME, mRNA sequence
Length = 384
Score = 204 bits (103), Expect = 3e-051
Identities = 178/203 (87%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaata 99
|||||||| |||||||| ||||||||||||||||| |||||||| || | |||||| |||
Sbjct: 278 aggggctcgtgctctttctcccaccatgactcccaacttttctccggcgacacaccgata 219
Query: 100 cctccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccac 159
|| || || |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 218 cccccgcggttgctgatccacttgttccagacagtccagtcatccacaatcttctgccac 159
Query: 160 tcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccac 219
|| || |||||||| ||||||||||| || ||||||||||| || | ||||||||||||
Sbjct: 158 tcgaacccagaagggttgaacaggaacggcgcaaagagccaggtaacgaccatgaaccac 99
Query: 220 atggatacggtgatgaagatgta 242
||||| | ||| |||||||||||
Sbjct: 98 atggagaaggttatgaagatgta 76
>gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025E14f, mRNA sequence
Length = 725
Score = 196 bits (99), Expect = 7e-049
Identities = 177/203 (87%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaata 99
|||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||| |||
Sbjct: 378 aggggctcgtgctctttctcccaccatgactcccaacttttctccggtgaaacaccgata 319
Query: 100 cctccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccac 159
|| || || |||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct: 318 cccccgcggttgctgatccacttgttccagtcagtccagtcatccacaatcttttgccac 259
Query: 160 tcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccac 219
| || |||||||| ||||||||||| || ||||||||||| || | ||||||||||||
Sbjct: 258 tggaacccagaagggttgaacaggaacggcgcaaagagccaggtagcgaccatgaaccac 199
Query: 220 atggatacggtgatgaagatgta 242
||||| | ||| |||||||||||
Sbjct: 198 atggagaaggttatgaagatgta 176
Score = 77.8 bits (39), Expect = 4e-013
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 295 atcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctcagca 354
||||||| ||| | ||||||||| |||||||| || || || || ||||||||||| ||
Sbjct: 123 atcatcaactcgatgcccttgacgaaatggctccgcgagtacagccgatagttctcggcg 64
Query: 355 aatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctccatg 413
|| |||||||||||| ||| || ||||||||||| ||||| || || |||||||||||
Sbjct: 63 aacttggcatggaaccccaggaatccacgtccagtagctctatactcagctcctccatg 5
>gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 5', mRNA sequence
Length = 582
Score = 127 bits (64), Expect = 5e-028
Identities = 166/201 (82%)
Strand = Plus / Minus
Query: 384 tccagtggctctgtattccgctcctccatggagtaacgtccttccgtagtagtgagtttt 443
|||||| ||||| || || ||||||||||| || | |||| |||||||||||||||| ||
Sbjct: 582 tccagtagctctatactcagctcctccatgtagcagcgtctttccgtagtagtgagtctt 523
Query: 444 tgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagtataaaatc 503
||||| | |||||||||||||| || || || ||||||||||||||||| | ||| ||
Sbjct: 522 ggttccgagggagaatgtgaagaagacggatgctaactgaagctgcatcagcacaaagtc 463
Query: 504 actcaatgcagttctgaatcctctctccaaaccgatttccatcatcatgggcagcgccat 563
|||||||| || ||||| |||||||||| ||| || ||||||||||| || || |||||
Sbjct: 462 gctcaatgcggtcctgaaccctctctccagaccaatctccatcatcatagggagtgccat 403
Query: 564 caaaaatccangnngcacaaa 584
||| || ||| | |||||||
Sbjct: 402 caagaagccaagctgcacaaa 382
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 5', mRNA sequence
Length = 589
Score = 121 bits (61), Expect = 3e-026
Identities = 151/182 (82%)
Strand = Plus / Minus
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
||||||||||| || | |||| |||||||||||||||| || ||||| | |||||||||
Sbjct: 575 gctcctccatgtagcagcgtctttccgtagtagtgagtcttggttccgagggagaatgtg 516
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||| || || || ||||||||||||||||| | ||| || |||||||| || |||||
Sbjct: 515 aagaagacggatgctaactgaagctgcatcagcacaaagtcgctcaatgcggtcctgaac 456
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| || ||||||||||| || || |||||||| || ||| | |||||
Sbjct: 455 cctctctccagaccaatctccatcatcatagggagtgccatcaagaagccaagctgcaca 396
Query: 583 aa 584
||
Sbjct: 395 aa 394
>gb|BF265457.3|BF265457 HV_CEa0012F07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012F07f, mRNA sequence
Length = 654
Score = 107 bits (54), Expect = 5e-022
Identities = 93/106 (87%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaata 99
|||||||| |||||||| ||||||||||||||||| |||||||| || | ||||| |||
Sbjct: 106 aggggctcgtgctctttctcccaccatgactcccaacttttctccggcgaaacaccgata 47
Query: 100 cctccacgattgctgatccacttgtgccaatcagtccagtcatcca 145
|| || || |||||||||||||||| ||| ||||||||||||||||
Sbjct: 46 cccccgcggttgctgatccacttgttccagtcagtccagtcatcca 1
>gb|BG418430.1|BG418430 HVSMEk0022K21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022K21f, mRNA sequence
Length = 507
Score = 93.7 bits (47), Expect = 7e-018
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaata 99
|||||||| |||||||| ||||||||||||||||| |||||||| || | ||||| |||
Sbjct: 99 aggggctcgtgctctttctcccaccatgactcccaacttttctccggcgaaacaccgata 40
Query: 100 cctccacgattgctgatccacttgtgccaatcagtccag 138
|| || || |||||||||||||||| ||| |||||||||
Sbjct: 39 cccccgcggttgctgatccacttgttccagtcagtccag 1
>gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 5', mRNA sequence
Length = 537
Score = 91.7 bits (46), Expect = 3e-017
Identities = 109/131 (83%)
Strand = Plus / Minus
Query: 454 gagaatgtgaagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgca 513
|||||||||||||| || || || ||||||||||||||||| | ||| || ||||||||
Sbjct: 535 gagaatgtgaagaagacggatgctaactgaagctgcatcagcacaaagtcgctcaatgcg 476
Query: 514 gttctgaatcctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatcca 573
|| ||||| |||||||||| ||| || ||||||||||| || || |||||||| || |||
Sbjct: 475 gtcctgaaccctctctccagaccaatctccatcatcatagggagtgccatcaagaagcca 416
Query: 574 ngnngcacaaa 584
| |||||||
Sbjct: 415 agctgcacaaa 405
>gb|BU999201.1|BU999201 HI13K20r HI Hordeum vulgare subsp. vulgare cDNA clone HI13K20
5-PRIME, mRNA sequence
Length = 152
Score = 81.8 bits (41), Expect = 3e-014
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 47 cctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacctccac 106
|||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct: 63 cctgctctttgtcccaccaccattcccagcttttctctggcgccacaccaatacctccac 4
Query: 107 g 107
|
Sbjct: 3 g 3
>gb|BU982241.1|BU982241 HA25P01r HA Hordeum vulgare subsp. vulgare cDNA clone HA25P01
5-PRIME, mRNA sequence
Length = 300
Score = 61.9 bits (31), Expect = 3e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 457 aatgtgaagaaaacagaggccaactgaagctgcat 491
||||||||||| |||||||||||||||||||||||
Sbjct: 166 aatgtgaagaacacagaggccaactgaagctgcat 132
>gb|AV926707.1|AV926707 AV926707 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h13 5', mRNA sequence
Length = 495
Score = 58.0 bits (29), Expect = 4e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagctttt 80
|||||||| |||||||| ||||||||||||||||| |||||
Sbjct: 54 aggggctcgtgctctttctcccaccatgactcccaactttt 14
>gb|AV926708.1|AV926708 AV926708 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h14 5', mRNA sequence
Length = 300
Score = 58.0 bits (29), Expect = 4e-007
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 40 aggggctcctgctctttttcccaccatgactcccagctttt 80
|||||||| |||||||| ||||||||||||||||| |||||
Sbjct: 55 aggggctcgtgctctttctcccaccatgactcccaactttt 15
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaa 356
||||||||||| ||||||||||| || || |||||||||||
Sbjct: 639 acaaaatggcttcgggaataaagacggtaattctcagcaaa 599
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaa 356
||||||||||| ||||||||||| || || |||||||||||
Sbjct: 317 acaaaatggcttcgggaataaagacggtaattctcagcaaa 277
>gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D22
5-PRIME, mRNA sequence
Length = 478
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaa 356
||||||||||| ||||||||||| || || |||||||||||
Sbjct: 160 acaaaatggcttcgggaataaagacggtaattctcagcaaa 120
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaa 356
||||||||||| ||||||||||| || || |||||||||||
Sbjct: 4981 acaaaatggcttcgggaataaagacggtaattctcagcaaa 4941
>gb|BM928837.1|BM928837 LP10011 Lemma/palea-enriched cDNA library from elongation stage
of kernel Hordeum vulgare subsp. vulgare cDNA clone
1-11 similar to alanine aminotransferase, mRNA sequence
Length = 354
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggaggtac 19
|||||||||||||||||||
Sbjct: 5 gcggccgcccgggaggtac 23
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,473
Number of Sequences: 312970
Number of extensions: 60473
Number of successful extensions: 16275
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16244
Number of HSP's gapped (non-prelim): 31
length of query: 690
length of database: 175,134,539
effective HSP length: 19
effective length of query: 671
effective length of database: 169,188,109
effective search space: 113525221139
effective search space used: 113525221139
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)