BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCG13d12.yg.2.1
         (755 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV923029.1|AV923029  AV923029 K. Sato unpublished cDNA li...   210   5e-053
gb|AV934137.1|AV934137  AV934137 K. Sato unpublished cDNA li...    68   5e-010
gb|BJ470174.1|BJ470174  BJ470174 K. Sato unpublished cDNA li...    68   5e-010
gb|AY177665.1|  Hordeum vulgare subsp. vulgare putative call...    46   0.002
gb|BJ462458.1|BJ462458  BJ462458 K. Sato unpublished cDNA li...    44   0.007
gb|BM371382.2|BM371382  EBma08_SQ002_I06_R maternal, 28 DPA,...    44   0.007
gb|BM928843.1|BM928843  LP10030 Lemma/palea-enriched cDNA li...    42   0.026
gb|BQ134670.1|BQ134670  LP30108 Lemma/palea-enriched cDNA li...    42   0.026
gb|BM376094.2|BM376094  EBma01_SQ002_F09_R maternal, 4 DPA, ...    42   0.026
gb|BM371381.2|BM371381  EBma08_SQ002_I05_R maternal, 28 DPA,...    42   0.026
gb|BM376133.1|BM376133  EBma01_SQ002_H07_R maternal, 4 DPA, ...    40   0.10 
gb|BM928833.1|BM928833  LP10006 Lemma/palea-enriched cDNA li...    40   0.10 
gb|BM928834.1|BM928834  LP10007 Lemma/palea-enriched cDNA li...    40   0.10 
gb|BM928858.1|BM928858  LP20059 Lemma/palea-enriched cDNA li...    40   0.10 
gb|BQ134683.1|BQ134683  LP30159 Lemma/palea-enriched cDNA li...    40   0.10 
gb|BM376088.2|BM376088  EBma01_SQ002_F01_R maternal, 4 DPA, ...    40   0.10 
gb|BM371429.2|BM371429  EBma08_SQ002_L04_R maternal, 28 DPA,...    40   0.10 
gb|CD240764.1|CD240764  LP30021 Lemma/palea-enriched cDNA li...    40   0.10 
gb|BM928867.1|BM928867  LP300020 Lemma/palea-enriched cDNA l...    38   0.41 
gb|BU969103.1|BU969103  HB10J09r BC Hordeum vulgare subsp. v...    38   0.41 
>gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd3g22 5', mRNA sequence
          Length = 611

 Score =  210 bits (106), Expect = 5e-053
 Identities = 241/286 (84%)
 Strand = Plus / Minus

                                                                       
Query: 30  gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
           ||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 291 gtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcactaagattg 232

                                                                       
Query: 90  ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
           ||||| || |||||||| || ||||||||||| || |  ||||| || ||||| ||||||
Sbjct: 231 ataatcttagatgctttgcttacaccaccccttgtgagatggaagagtcgatcaaagata 172

                                                                       
Query: 150 tcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtccaatt 209
           |||||||| ||||||||||| |||||||| || ||||||||||| || || |||||||| 
Sbjct: 171 tcaggatgtccataatgaaatcgaacccttaaaggattggcaagtacacgctgtccaata 112

                                                                       
Query: 210 gttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgcccgta 269
           || || ||||| || || || |||||||||||||| ||||| || || |||||||| || 
Sbjct: 111 gtcacaaaacttgtctcttggtttgacatgaaccacgcaagcgaagaaacactgccagtg 52

                                                         
Query: 270 aatatgtgttctctgactccaagcatcgatggatatctcactccat 315
           ||||| |||||||| || ||||| || | |||||| ||||| ||||
Sbjct: 51  aatatatgttctcttacaccaagtattgttggatacctcacaccat 6
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
          heading stage top three leaves Hordeum vulgare subsp.
          vulgare cDNA clone baal11c09 5', mRNA sequence
          Length = 589

 Score = 67.9 bits (34), Expect = 5e-010
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                    
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagat 87
          ||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 62 gtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcactaagat 5
>gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
          heading stage top three leaves Hordeum vulgare subsp.
          vulgare cDNA clone baal15l17 5', mRNA sequence
          Length = 537

 Score = 67.9 bits (34), Expect = 5e-010
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                    
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagat 87
          ||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 73 gtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcactaagat 16
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
            complete cds
          Length = 6180

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 216  aaactagtttcctgatttgacat 238
            |||||||||||||||||||||||
Sbjct: 4195 aaactagtttcctgatttgacat 4173

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 54   gaattgaatcctgcaaatatgtcctcactgagattgataattttggatgctttactcaca 113
            ||||| || ||||||||||| |||||||||| |||||| ||   ||| || ||||| |  
Sbjct: 4357 gaattaaaccctgcaaatatatcctcactgatattgatgatacgggacgccttactgatg 4298

                          
Query: 114  ccacccctcgtaat 127
            ||||||||||||||
Sbjct: 4297 ccacccctcgtaat 4284

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 336  agcagatttctcattttcaaagcctcctccatatagtgctcctgattcatatctatagtt 395
            |||||||||| |||||| |  |||||||| | |||||  |||||||||||||| || |||
Sbjct: 4075 agcagatttcgcattttgagtgcctcctcgaaatagttgtcctgattcatatcaatggtt 4016

              
Query: 396  tg 397
            ||
Sbjct: 4015 tg 4014
>gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags28g06 5', mRNA sequence
          Length = 666

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                       
Query: 17  gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtc 76
           |||||| ||||| |||||||||||  |||| |  ||  |||||||||| ||||| || ||
Sbjct: 233 gtactcatggtgtgtaacattgcccccacggagggtacaattgaatccagcaaagatatc 174

                                                     
Query: 77  ctcactgagattgataattttggatgctttactcacaccacc 118
           ||||||||  ||||| | | | ||||||||||| | ||||||
Sbjct: 173 ctcactgatgttgattactcttgatgctttactaataccacc 132
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
           Hordeum vulgare subsp. vulgare cDNA clone
           EBma08_SQ002_I06 5', mRNA sequence
          Length = 494

 Score = 44.1 bits (22), Expect = 0.007
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 1   gcggccgcccgggcaggtactc 22
           ||||||||||||||||||||||
Sbjct: 433 gcggccgcccgggcaggtactc 412
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
           kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
           similar to Cytosolic GA3PDH gene, mRNA sequence
          Length = 478

 Score = 42.1 bits (21), Expect = 0.026
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtact 21
           |||||||||||||||||||||
Sbjct: 290 gcggccgcccgggcaggtact 270

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 283 gcggccgcccgggcaggtac 302
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
           kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
           mRNA sequence
          Length = 530

 Score = 42.1 bits (21), Expect = 0.026
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtact 21
           |||||||||||||||||||||
Sbjct: 347 gcggccgcccgggcaggtact 327
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
           Hordeum vulgare subsp. vulgare cDNA clone
           EBma01_SQ002_F09 5', mRNA sequence
          Length = 387

 Score = 42.1 bits (21), Expect = 0.026
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtact 21
           |||||||||||||||||||||
Sbjct: 353 gcggccgcccgggcaggtact 333
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
           Hordeum vulgare subsp. vulgare cDNA clone
           EBma08_SQ002_I05 5', mRNA sequence
          Length = 581

 Score = 42.1 bits (21), Expect = 0.026
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtact 21
           |||||||||||||||||||||
Sbjct: 519 gcggccgcccgggcaggtact 499
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
           Hordeum vulgare subsp. vulgare cDNA clone
           EBma01_SQ002_H07 5', mRNA sequence
          Length = 422

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 360 gcggccgcccgggcaggtac 341
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
           kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
           mRNA sequence
          Length = 544

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 254 gcggccgcccgggcaggtac 273

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 261 gcggccgcccgggcaggtac 242
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage
          of kernel Hordeum vulgare subsp. vulgare cDNA clone
          1-7, mRNA sequence
          Length = 420

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 10 gcggccgcccgggcaggtac 29
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
           kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
           similar to Rubisco small sub-unit gene, mRNA sequence
          Length = 491

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 260 gcggccgcccgggcaggtac 241
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
           kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
           similar to putative ABC transporter, mRNA sequence
          Length = 339

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 281 gcggccgcccgggcaggtac 262
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
           Hordeum vulgare subsp. vulgare cDNA clone
           EBma01_SQ002_F01 5', mRNA sequence
          Length = 256

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 84  gcggccgcccgggcaggtac 103
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
           Hordeum vulgare subsp. vulgare cDNA clone
           EBma08_SQ002_L04 5', mRNA sequence
          Length = 454

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 84  gcggccgcccgggcaggtac 103
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
           kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
           similar to A. thaliana AtRer1A, Accession No. AY044321,
           mRNA sequence
          Length = 342

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 342

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   gcggccgcccgggcaggta 19
           |||||||||||||||||||
Sbjct: 330 gcggccgcccgggcaggta 312
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
           kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
           mRNA sequence
          Length = 216

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 2   cggccgcccgggcaggtac 20
           |||||||||||||||||||
Sbjct: 212 cggccgcccgggcaggtac 194
>gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10J09
          5-PRIME, mRNA sequence
          Length = 426

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                         
Query: 54 gaattgaatcctgcaaatatgtcctcactga 84
          ||||| || ||||||||||| ||||||||||
Sbjct: 45 gaattaaaccctgcaaatatatcctcactga 15
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,840
Number of Sequences: 312970
Number of extensions: 45840
Number of successful extensions: 11807
Number of sequences better than  0.5: 20
Number of HSP's better than  0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11779
Number of HSP's gapped (non-prelim): 27
length of query: 755
length of database: 175,134,539
effective HSP length: 19
effective length of query: 736
effective length of database: 169,188,109
effective search space: 124522448224
effective search space used: 124522448224
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)