BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA li... 210 5e-053
gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA li... 68 5e-010
gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA li... 68 5e-010
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 46 0.002
gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA li... 44 0.007
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 44 0.007
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 42 0.026
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 42 0.026
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.026
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 42 0.026
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 40 0.10
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.10
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.10
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.10
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.10
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.10
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.10
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.10
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.41
gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. v... 38 0.41
>gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 5', mRNA sequence
Length = 611
Score = 210 bits (106), Expect = 5e-053
Identities = 241/286 (84%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 291 gtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcactaagattg 232
Query: 90 ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
||||| || |||||||| || ||||||||||| || | ||||| || ||||| ||||||
Sbjct: 231 ataatcttagatgctttgcttacaccaccccttgtgagatggaagagtcgatcaaagata 172
Query: 150 tcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtccaatt 209
|||||||| ||||||||||| |||||||| || ||||||||||| || || ||||||||
Sbjct: 171 tcaggatgtccataatgaaatcgaacccttaaaggattggcaagtacacgctgtccaata 112
Query: 210 gttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgcccgta 269
|| || ||||| || || || |||||||||||||| ||||| || || |||||||| ||
Sbjct: 111 gtcacaaaacttgtctcttggtttgacatgaaccacgcaagcgaagaaacactgccagtg 52
Query: 270 aatatgtgttctctgactccaagcatcgatggatatctcactccat 315
||||| |||||||| || ||||| || | |||||| ||||| ||||
Sbjct: 51 aatatatgttctcttacaccaagtattgttggatacctcacaccat 6
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 5', mRNA sequence
Length = 589
Score = 67.9 bits (34), Expect = 5e-010
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagat 87
||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 62 gtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcactaagat 5
>gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 5', mRNA sequence
Length = 537
Score = 67.9 bits (34), Expect = 5e-010
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagat 87
||||| || |||||||||| ||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 73 gtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcactaagat 16
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 216 aaactagtttcctgatttgacat 238
|||||||||||||||||||||||
Sbjct: 4195 aaactagtttcctgatttgacat 4173
Score = 44.1 bits (22), Expect = 0.007
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 54 gaattgaatcctgcaaatatgtcctcactgagattgataattttggatgctttactcaca 113
||||| || ||||||||||| |||||||||| |||||| || ||| || ||||| |
Sbjct: 4357 gaattaaaccctgcaaatatatcctcactgatattgatgatacgggacgccttactgatg 4298
Query: 114 ccacccctcgtaat 127
||||||||||||||
Sbjct: 4297 ccacccctcgtaat 4284
Score = 44.1 bits (22), Expect = 0.007
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 336 agcagatttctcattttcaaagcctcctccatatagtgctcctgattcatatctatagtt 395
|||||||||| |||||| | |||||||| | ||||| |||||||||||||| || |||
Sbjct: 4075 agcagatttcgcattttgagtgcctcctcgaaatagttgtcctgattcatatcaatggtt 4016
Query: 396 tg 397
||
Sbjct: 4015 tg 4014
>gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28g06 5', mRNA sequence
Length = 666
Score = 44.1 bits (22), Expect = 0.007
Identities = 82/102 (80%)
Strand = Plus / Minus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtc 76
|||||| ||||| ||||||||||| |||| | || |||||||||| ||||| || ||
Sbjct: 233 gtactcatggtgtgtaacattgcccccacggagggtacaattgaatccagcaaagatatc 174
Query: 77 ctcactgagattgataattttggatgctttactcacaccacc 118
|||||||| ||||| | | | ||||||||||| | ||||||
Sbjct: 173 ctcactgatgttgattactcttgatgctttactaataccacc 132
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactc 22
||||||||||||||||||||||
Sbjct: 433 gcggccgcccgggcaggtactc 412
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 290 gcggccgcccgggcaggtact 270
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 283 gcggccgcccgggcaggtac 302
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 347 gcggccgcccgggcaggtact 327
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 353 gcggccgcccgggcaggtact 333
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 519 gcggccgcccgggcaggtact 499
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 360 gcggccgcccgggcaggtac 341
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 254 gcggccgcccgggcaggtac 273
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 261 gcggccgcccgggcaggtac 242
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage
of kernel Hordeum vulgare subsp. vulgare cDNA clone
1-7, mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 10 gcggccgcccgggcaggtac 29
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 260 gcggccgcccgggcaggtac 241
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 281 gcggccgcccgggcaggtac 262
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 103
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 103
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 342
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 330 gcggccgcccgggcaggta 312
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtac 20
|||||||||||||||||||
Sbjct: 212 cggccgcccgggcaggtac 194
>gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10J09
5-PRIME, mRNA sequence
Length = 426
Score = 38.2 bits (19), Expect = 0.41
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 54 gaattgaatcctgcaaatatgtcctcactga 84
||||| || ||||||||||| ||||||||||
Sbjct: 45 gaattaaaccctgcaaatatatcctcactga 15
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,840
Number of Sequences: 312970
Number of extensions: 45840
Number of successful extensions: 11807
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11779
Number of HSP's gapped (non-prelim): 27
length of query: 755
length of database: 175,134,539
effective HSP length: 19
effective length of query: 736
effective length of database: 169,188,109
effective search space: 124522448224
effective search space used: 124522448224
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)