BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF7a10.yg.2.1
(523 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU973855.1|BU973855 HB26C19r BC Hordeum vulgare subsp. v... 311 1e-083
gb|CA009582.1|CA009582 HU14I15r HU Hordeum vulgare subsp. v... 305 8e-082
gb|BG300460.1|BG300460 HVSMEb0017C05f Hordeum vulgare seedl... 268 2e-070
gb|BJ454539.1|BJ454539 BJ454539 K. Sato unpublished cDNA li... 216 5e-055
gb|BJ463647.1|BJ463647 BJ463647 K. Sato unpublished cDNA li... 115 1e-024
gb|BU974311.1|BU974311 HB27I16r BC Hordeum vulgare subsp. v... 109 9e-023
gb|BG301002.1|BG301002 HVSMEb0019D14f Hordeum vulgare seedl... 98 3e-019
gb|BF627127.2|BF627127 HVSMEb0004A09f Hordeum vulgare seedl... 76 1e-012
gb|BF255654.2|BF255654 HVSMEf0007H02f Hordeum vulgare seedl... 76 1e-012
gb|BQ472666.1|BQ472666 HB01N17r BC Hordeum vulgare subsp. v... 76 1e-012
gb|BU975231.1|BU975231 HB30H20r BC Hordeum vulgare subsp. v... 76 1e-012
gb|CA027499.1|CA027499 HZ59C02r HZ Hordeum vulgare subsp. v... 76 1e-012
gb|BJ468853.1|BJ468853 BJ468853 K. Sato unpublished cDNA li... 74 5e-012
gb|AV922700.1|AV922700 AV922700 K. Sato unpublished cDNA li... 62 2e-008
gb|BE195440.3|BE195440 HVSMEh0089K10f Hordeum vulgare 5-45 ... 56 1e-006
gb|BJ462697.1|BJ462697 BJ462697 K. Sato unpublished cDNA li... 56 1e-006
gb|BM374688.1|BM374688 EBma05_SQ002_H10_R maternal, 12 DPA,... 54 5e-006
gb|BU999595.1|BU999595 HI14P19r HI Hordeum vulgare subsp. v... 54 5e-006
gb|BI947860.1|BI947860 HVSMEl0007D23f Hordeum vulgare spike... 48 3e-004
gb|CA027598.1|CA027598 HZ59G21r HZ Hordeum vulgare subsp. v... 46 0.001
gb|AL505573.1|AL505573 AL505573 Hordeum vulgare Barke roots... 44 0.005
>gb|BU973855.1|BU973855 HB26C19r BC Hordeum vulgare subsp. vulgare cDNA clone HB26C19
5-PRIME, mRNA sequence
Length = 554
Score = 311 bits (157), Expect = 1e-083
Identities = 247/277 (89%)
Strand = Plus / Plus
Query: 64 cactctgtatatttgctctgaagcaatctcctggttttggtggcaatagtgtgttttctc 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 cactctgtatatttgttctgaagcaatctcctggttttggtggcaatagtgtgttttctc 143
Query: 124 gccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatattggttcac 183
||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 144 gccatgaacctggggttacccatgtcttagtgacaggaggagctggctatattggttcac 203
Query: 184 atgccgctttaaggctcttacaggatagctatcgagttaccattgtggataatctatcta 243
||||| | ||| |||| ||| | |||| ||||||||||||||||||||| ||||| ||||
Sbjct: 204 atgcctcattacggctattaaaagataactatcgagttaccattgtggacaatctttcta 263
Query: 244 gaggaaatatgggagcagtaaaggttctgcagggcttatttccgcagcctggtagactac 303
||||||||| ||||||||||||||||| || | || |||||| ||||||| ||||| |
Sbjct: 264 gaggaaataaaggagcagtaaaggttctccaagaattgtttccggagcctgggagacttc 323
Query: 304 aattcatctttgctgatctgggggaccagaaatctgt 340
| ||||||| ||| ||||| ||||| || ||||||||
Sbjct: 324 agttcatctatgcagatcttggggatcaaaaatctgt 360
Score = 109 bits (55), Expect = 9e-023
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 439 aacaagatatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttat 498
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 362 aacaagatattttctgaaaatgcatttgatgctgtgatgcacttcgcagctgttgcctat 421
Query: 499 gtgggagagagcacattggaacccc 523
||||| ||||| ||| |||||||||
Sbjct: 422 gtgggtgagagtacaatggaacccc 446
>gb|CA009582.1|CA009582 HU14I15r HU Hordeum vulgare subsp. vulgare cDNA clone HU14I15
5-PRIME, mRNA sequence
Length = 668
Score = 305 bits (154), Expect = 8e-082
Identities = 246/277 (88%)
Strand = Plus / Plus
Query: 64 cactctgtatatttgctctgaagcaatctcctggttttggtggcaatagtgtgttttctc 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cactctgtatatttgttctgaagcaatctcctggttttggtggcaatagtgtgttttctc 418
Query: 124 gccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatattggttcac 183
||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 419 gccatgaacctggggttacccatgtcttagtgacaggaggagctggctatattggttcac 478
Query: 184 atgccgctttaaggctcttacaggatagctatcgagttaccattgtggataatctatcta 243
||||| | ||| |||| ||| | |||| ||||||||||||||||||||| ||||| ||||
Sbjct: 479 atgcctcattacggctattaaaagataactatcgagttaccattgtggacaatctttcta 538
Query: 244 gaggaaatatgggagcagtaaaggttctgcagggcttatttccgcagcctggtagactac 303
||||||||| ||||||||||||||||| || | || |||||| |||||| ||||| |
Sbjct: 539 gaggaaataaaggagcagtaaaggttctccaagaattgtttccggagcctgngagacttc 598
Query: 304 aattcatctttgctgatctgggggaccagaaatctgt 340
| ||||||| ||| ||||| ||||| || ||||||||
Sbjct: 599 agttcatctatgcagatcttggggatcaaaaatctgt 635
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 439 aacaagatatttgctgaaaatgcatttgatgc 470
|||||||||||| |||||||||||||||||||
Sbjct: 637 aacaagatattttctgaaaatgcatttgatgc 668
>gb|BG300460.1|BG300460 HVSMEb0017C05f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017C05f, mRNA sequence
Length = 871
Score = 268 bits (135), Expect = 2e-070
Identities = 189/207 (91%)
Strand = Plus / Plus
Query: 64 cactctgtatatttgctctgaagcaatctcctggttttggtggcaatagtgtgttttctc 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cactctgtatatttgttctgaagcaatctcctggttttggtggcaatagtgtgttttctc 342
Query: 124 gccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatattggttcac 183
||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 343 gccatgaacctggggttacccatgtcttagtgacaggaggagctggctatattggttcac 402
Query: 184 atgccgctttaaggctcttacaggatagctatcgagttaccattgtggataatctatcta 243
||||| | ||| |||| ||| | |||| ||||||||||||||||||||| ||||| ||||
Sbjct: 403 atgcctcattacggctattaaaagataactatcgagttaccattgtggacaatctgtcta 462
Query: 244 gaggaaatatgggagcagtaaaggttc 270
|||||||| ||||||||||| ||||
Sbjct: 463 gaggaaattaaggagcagtaaaagttc 489
Score = 79.8 bits (40), Expect = 8e-014
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 439 aacaagatatttgctgaaaatgcatttgatgctgtgatgcactt 482
|||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 562 aacaagatatttcctgaaaatgcatttgatgctgtgatgcactt 605
>gb|BJ454539.1|BJ454539 BJ454539 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n03 5', mRNA sequence
Length = 629
Score = 216 bits (109), Expect = 5e-055
Identities = 196/225 (87%)
Strand = Plus / Plus
Query: 116 gttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatat 175
||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||
Sbjct: 39 gttttctcgccatgaacctggggttacccatgtcttagtgacaggaggagctggctatat 98
Query: 176 tggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggataa 235
||||||||||||| | ||| |||| ||| | |||| ||||||||||||||||||||| ||
Sbjct: 99 tggttcacatgcctcattacggctattaaaagataactatcgagttaccattgtggacaa 158
Query: 236 tctatctagaggaaatatgggagcagtaaaggttctgcagggcttatttccgcagcctgg 295
||| ||||||||||||| ||||||||||||||||| || | || |||||| |||||||
Sbjct: 159 tctttctagaggaaataaaggagcagtaaaggttctccaagaattgtttccggagcctgg 218
Query: 296 tagactacaattcatctttgctgatctgggggaccagaaatctgt 340
||||| || ||||||| ||| ||||| ||||| || ||||||||
Sbjct: 219 gagacttcagttcatctatgcagatcttggggatcaaaaatctgt 263
Score = 109 bits (55), Expect = 9e-023
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 439 aacaagatatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttat 498
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 265 aacaagatattttctgaaaatgcatttgatgctgtgatgcacttcgcagctgttgcctat 324
Query: 499 gtgggagagagcacattggaacccc 523
||||| ||||| ||| |||||||||
Sbjct: 325 gtgggtgagagtacaatggaacccc 349
>gb|BJ463647.1|BJ463647 BJ463647 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32o13 5', mRNA sequence
Length = 533
Score = 115 bits (58), Expect = 1e-024
Identities = 147/176 (83%), Gaps = 1/176 (0%)
Strand = Plus / Plus
Query: 165 gctggttatattggttcacatgccgctttaaggctcttacaggatagctatcgagttacc 224
||||| |||||||||| |||||| | ||| |||| ||| | |||| |||||||||||||
Sbjct: 11 gctggctatattggttn-catgcctcattacggctattaaaagataactatcgagttacc 69
Query: 225 attgtggataatctatctagaggaaatatgggagcagtaaaggttctgcagggcttattt 284
|||||||| ||||| ||||||||||||| ||||||||||||||||| || | || |||
Sbjct: 70 attgtggacaatctttctagaggaaataaaggagcagtaaaggttctccaagaattgttt 129
Query: 285 ccgcagcctggtagactacaattcatctttgctgatctgggggaccagaaatctgt 340
||| ||||||| ||||| | ||||||| ||| ||||| ||||| || ||||||||
Sbjct: 130 ccggagcctgggagacttnagttcatctatgcagatcttggggatcaaaaatctgt 185
Score = 109 bits (55), Expect = 9e-023
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 439 aacaagatatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttat 498
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 187 aacaagatattttctgaaaatgcatttgatgctgtgatgcacttcgcagctgttgcctat 246
Query: 499 gtgggagagagcacattggaacccc 523
||||| ||||| ||| |||||||||
Sbjct: 247 gtgggtgagagtacaatggaacccc 271
>gb|BU974311.1|BU974311 HB27I16r BC Hordeum vulgare subsp. vulgare cDNA clone HB27I16
5-PRIME, mRNA sequence
Length = 450
Score = 109 bits (55), Expect = 9e-023
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 439 aacaagatatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttat 498
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 92 aacaagatattttctgaaaatgcatttgatgctgtgatgcacttcgcagctgttgcctat 151
Query: 499 gtgggagagagcacattggaacccc 523
||||| ||||| ||| |||||||||
Sbjct: 152 gtgggtgagagtacaatggaacccc 176
Score = 48.1 bits (24), Expect = 3e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 261 gtaaaggttctgcagggcttatttccgcagcctggtagactacaattcatctttgctgat 320
||||||||||| || | || |||||| ||||||| ||||| || ||||||| ||| |||
Sbjct: 11 gtaaaggttctccaagaattgtttccggagcctgggagacttcagttcatctatgcagat 70
Query: 321 ctgggggaccagaaatctgt 340
|| ||||| || ||||||||
Sbjct: 71 cttggggatcaaaaatctgt 90
>gb|BG301002.1|BG301002 HVSMEb0019D14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019D14f, mRNA sequence
Length = 927
Score = 97.6 bits (49), Expect = 3e-019
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 64 cactctgtatatttgctctgaagcaatctcctggttttggtggcaatagtgtg 116
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 351 cactctgtatatttgttctgaagcaatctcctggttttggtggcaatagtgtg 403
>gb|BF627127.2|BF627127 HVSMEb0004A09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004A09f, mRNA sequence
Length = 751
Score = 75.8 bits (38), Expect = 1e-012
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttatgtggga 504
||||| || |||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 53 atattcgcagaaaatgcatttgatgctgtcatgcactttgctgccgttgcttatgtgggc 112
Query: 505 gagagcac 512
||||||||
Sbjct: 113 gagagcac 120
>gb|BF255654.2|BF255654 HVSMEf0007H02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007H02f, mRNA sequence
Length = 841
Score = 75.8 bits (38), Expect = 1e-012
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttatgtggga 504
||||| || |||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 337 atattcgcagaaaatgcatttgatgctgtcatgcactttgctgccgttgcttatgtgggc 396
Query: 505 gagagcac 512
||||||||
Sbjct: 397 gagagcac 404
Score = 54.0 bits (27), Expect = 5e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaatatgggagcagtaaaggttct 271
|||| ||||||||||||||||| || ||||||||||| || || || ||||||||
Sbjct: 206 gagtcaccattgtggataatctctcaagaggaaatatcggggcggtcaaggttct 260
>gb|BQ472666.1|BQ472666 HB01N17r BC Hordeum vulgare subsp. vulgare cDNA clone HB01N17
5-PRIME, mRNA sequence
Length = 521
Score = 75.8 bits (38), Expect = 1e-012
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttatgtggga 504
||||| || |||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 276 atattcgcagaaaatgcatttgatgctgtcatgcactttgctgccgttgcttatgtgggc 335
Query: 505 gagagcac 512
||||||||
Sbjct: 336 gagagcac 343
Score = 54.0 bits (27), Expect = 5e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaatatgggagcagtaaaggttct 271
|||| ||||||||||||||||| || ||||||||||| || || || ||||||||
Sbjct: 145 gagtcaccattgtggataatctctcaagaggaaatatcggggcggtcaaggttct 199
>gb|BU975231.1|BU975231 HB30H20r BC Hordeum vulgare subsp. vulgare cDNA clone HB30H20
5-PRIME, mRNA sequence
Length = 479
Score = 75.8 bits (38), Expect = 1e-012
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttatgtggga 504
||||| || |||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 46 atattcgcagaaaatgcatttgatgctgtcatgcactttgctgccgttgcttatgtgggc 105
Query: 505 gagagcac 512
||||||||
Sbjct: 106 gagagcac 113
>gb|CA027499.1|CA027499 HZ59C02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59C02
5-PRIME, mRNA sequence
Length = 405
Score = 75.8 bits (38), Expect = 1e-012
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttatgtggga 504
||||| || |||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 233 atattcgcagaaaatgcatttgatgctgtcatgcactttgctgccgttgcttatgtgggc 292
Query: 505 gagagcac 512
||||||||
Sbjct: 293 gagagcac 300
Score = 54.0 bits (27), Expect = 5e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaatatgggagcagtaaaggttct 271
|||| ||||||||||||||||| || ||||||||||| || || || ||||||||
Sbjct: 102 gagtcaccattgtggataatctctcaagaggaaatatcggggcggtcaaggttct 156
>gb|BJ468853.1|BJ468853 BJ468853 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27i15 5', mRNA sequence
Length = 561
Score = 73.8 bits (37), Expect = 5e-012
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttatgtggga 504
||||| || |||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 495 atattcgcagaaaatgcatttgatgctgtcatgcactttgctgccgttgcttatgtgggc 554
Query: 505 gagagca 511
|||||||
Sbjct: 555 gagagca 561
Score = 54.0 bits (27), Expect = 5e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaatatgggagcagtaaaggttct 271
|||| ||||||||||||||||| || ||||||||||| || || || ||||||||
Sbjct: 364 gagtcaccattgtggataatctctcaagaggaaatattggggcggtcaaggttct 418
>gb|AV922700.1|AV922700 AV922700 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd2a02 5', mRNA sequence
Length = 608
Score = 61.9 bits (31), Expect = 2e-008
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcactttgc-agctgnngcttatgtggg 503
||||| || |||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 500 atattcgcagaaaatgcatttgatgctgtcatgcactttgcttgccgttgcttatgtggg 559
Query: 504 agagagcac 512
||||||||
Sbjct: 560 cgagagcac 568
Score = 54.0 bits (27), Expect = 5e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaatatgggagcagtaaaggttct 271
|||| ||||||||||||||||| || ||||||||||| || || || ||||||||
Sbjct: 369 gagtcaccattgtggataatctctcaagaggaaatattggggcggtcaaggttct 423
>gb|BE195440.3|BE195440 HVSMEh0089K10f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0089K10f, mRNA sequence
Length = 988
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 216 cgagttaccattgtggataatctatctagaggaaatatgggagc 259
|||||||||||||||||||| || |||||||| || ||||||||
Sbjct: 49 cgagttaccattgtggataacctttctagagggaacatgggagc 92
Score = 50.1 bits (25), Expect = 7e-005
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 463 tttgatgctgtgatgcactttgcagctgnngcttatgtgggagagagcaca 513
||||||||||| ||||||||||| || | |||||||| || |||||||||
Sbjct: 199 tttgatgctgttatgcactttgccgcggttgcttatgttggtgagagcaca 249
>gb|BJ462697.1|BJ462697 BJ462697 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29p06 5', mRNA sequence
Length = 590
Score = 56.0 bits (28), Expect = 1e-006
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcacttt-gcagctgnngcttatgtggg 503
||||| || |||||||||||||||||||| ||||||||| || || | |||||||||||
Sbjct: 506 atattcgcagaaaatgcatttgatgctgtcatgcacttttgctgccgttgcttatgtggg 565
Query: 504 agagagcac 512
|||||||
Sbjct: 566 cnagagcac 574
Score = 54.0 bits (27), Expect = 5e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaatatgggagcagtaaaggttct 271
|||| ||||||||||||||||| || ||||||||||| || || || ||||||||
Sbjct: 375 gagtcaccattgtggataatctctcaagaggaaatattggggcggtcaaggttct 429
>gb|BM374688.1|BM374688 EBma05_SQ002_H10_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_H10 5', mRNA sequence
Length = 564
Score = 54.0 bits (27), Expect = 5e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaatatgggagcagtaaaggttct 271
|||| ||||||||||||||||| || ||||||||||| || || || ||||||||
Sbjct: 424 gagtcaccattgtggataatctctcaagaggaaatattggggcggtcaaggttct 478
>gb|BU999595.1|BU999595 HI14P19r HI Hordeum vulgare subsp. vulgare cDNA clone HI14P19
5-PRIME, mRNA sequence
Length = 575
Score = 54.0 bits (27), Expect = 5e-006
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaatatgggagcagtaaaggttct 271
|||| ||||||||||||||||| || ||||||||||| || || || ||||||||
Sbjct: 407 gagtcaccattgtggataatctctcaagaggaaatatcggggcggtcaaggttct 461
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 445 atatttgctgaaaatgcatttgatgctgtgatgcactt 482
||||| || |||||||||||||||||||| ||||||||
Sbjct: 538 atattcgcagaaaatgcatttgatgctgtcatgcactt 575
>gb|BI947860.1|BI947860 HVSMEl0007D23f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0007D23f, mRNA sequence
Length = 849
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 222 accattgtggataatctatctagaggaaatat 253
||||||||||||||||| || |||||||||||
Sbjct: 369 accattgtggataatctctcaagaggaaatat 400
>gb|CA027598.1|CA027598 HZ59G21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59G21
5-PRIME, mRNA sequence
Length = 367
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 217 gagttaccattgtggataatctatctagaggaaat 251
|||| ||||||||||||||||| || |||||||||
Sbjct: 333 gagtcaccattgtggataatctctcaagaggaaat 367
>gb|AL505573.1|AL505573 AL505573 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08O06V 5', mRNA sequence
Length = 450
Score = 44.1 bits (22), Expect = 0.005
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 466 gatgctgtgatgcactttgcagctgnngcttatgtgggagagagcaca 513
|||||||| ||||||||||| || | |||||||| || |||||||||
Sbjct: 58 gatgctgttatgcactttgccgcggttgcttatgttggtgagagcaca 105
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,811
Number of Sequences: 312970
Number of extensions: 44811
Number of successful extensions: 11777
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11739
Number of HSP's gapped (non-prelim): 37
length of query: 523
length of database: 175,134,539
effective HSP length: 18
effective length of query: 505
effective length of database: 169,501,079
effective search space: 85598044895
effective search space used: 85598044895
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)