BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF4h05.yg.2.1
(697 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 517 e-145
gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. v... 268 2e-070
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 236 8e-061
gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA li... 80 1e-013
gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA li... 78 4e-013
gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA li... 78 4e-013
gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA li... 58 4e-007
gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA li... 48 4e-004
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 38 0.37
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 38 0.37
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 38 0.37
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 38 0.37
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 38 0.37
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 38 0.37
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 38 0.37
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 38 0.37
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 38 0.37
gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA li... 38 0.37
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 38 0.37
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 38 0.37
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 38 0.37
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 38 0.37
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 38 0.37
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 38 0.37
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 38 0.37
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 38 0.37
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 38 0.37
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 517 bits (261), Expect = e-145
Identities = 479/554 (86%)
Strand = Plus / Minus
Query: 20 gtacagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaa 79
||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 4573 gtacagaagtaaaacccaacagtagtcacatagaaggataacatcctgaaaaagtcaaaa 4514
Query: 80 agttgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaact 139
||||| || ||||| ||||| |||| ||||||||||||||| || ||||| || ||||||
Sbjct: 4513 agttgcccaagtctgtatatatctctgctaagaacttgttcgccgtttcctcccgcaact 4454
Query: 140 tttccttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaata 199
||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| |||
Sbjct: 4453 tttccttcaaatagtgcgatctgattaagcccaacatctcttcctttaccaacctggata 4394
Query: 200 tattcatgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcc 259
|| ||||| ||||||||| |||||||||||||| || || || |||||| ||||||||
Sbjct: 4393 tactcatggtgagttatgttcccttgacgcagagtagaattaaaccctgcaaatatatcc 4334
Query: 260 tcactgatattgatgctgcgagaggccttactaattccaccccttgttatatgaaaaatt 319
||||||||||||||| | || || |||||||| || |||||||| || |||||||| |||
Sbjct: 4333 tcactgatattgatgatacgggacgccttactgatgccacccctcgtaatatgaaatatt 4274
Query: 320 ctatcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaaca 379
|||||||| || ||||| |||||||| ||||||||||||||||| || |||| |||||||
Sbjct: 4273 ctatcaaacacgtctgggtgaccataatgcattctcactttcagtggattagaaagaaca 4214
Query: 380 cgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaa 439
||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||
Sbjct: 4213 cgctgtcctaatgtcacaaaactagtttcctgatttgacataaatgaagcaagggaggaa 4154
Query: 440 acacttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgc 499
|||||||| ||||||||||| || |||||||||||||| ||||| | ||||||| |
Sbjct: 4153 acacttccggtgaagacatgttctctaacaccaagaattgaaggcttgaacttgccatga 4094
Query: 500 ttcagagagaactcctcaagcaggtttctcattttaagtgcctnctcnnnntagnnatcc 559
|| ||||||| ||||||||||| |||| |||||| ||||||| ||| ||| |||
Sbjct: 4093 ttttgagagaattcctcaagcagatttcgcattttgagtgcctcctcgaaatagttgtcc 4034
Query: 560 tgattcatatcaat 573
||||||||||||||
Sbjct: 4033 tgattcatatcaat 4020
>gb|BU969103.1|BU969103 HB10J09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10J09
5-PRIME, mRNA sequence
Length = 426
Score = 268 bits (135), Expect = 2e-070
Identities = 222/251 (88%)
Strand = Plus / Minus
Query: 20 gtacagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaa 79
||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gtacagaagtaaaacccaacagtagtcacatagaaggataacatcctgaaaaagtcaaaa 202
Query: 80 agttgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaact 139
||||| || ||||| ||||| |||| ||||||||||||||| || ||||| || ||||||
Sbjct: 201 agttgcccaagtctgtatatatctctgctaagaacttgttcgccgtttcctcccgcaact 142
Query: 140 tttccttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaata 199
||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| |||
Sbjct: 141 tttccttcaaatagtgcgatctgattaagcccaacatctcttcctttaccaacctggata 82
Query: 200 tattcatgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcc 259
|| ||||| ||||||||| |||||||||||||| || || || |||||| ||||||||
Sbjct: 81 tactcatggtgagttatgttcccttgacgcagagtagaattaaaccctgcaaatatatcc 22
Query: 260 tcactgatatt 270
|||||||||||
Sbjct: 21 tcactgatatt 11
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 236 bits (119), Expect = 8e-061
Identities = 191/215 (88%)
Strand = Plus / Minus
Query: 20 gtacagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaa 79
||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 231 gtacagaagtaaaacccaacagtagtcacatagaaggataacatcctgaaaaagtcaaaa 172
Query: 80 agttgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaact 139
||||| || ||||| ||||| |||| ||||||||||||||| || ||||| || ||||||
Sbjct: 171 agttgcccaagtctgtatatatctctgctaagaacttgttcgccgtttcctcccgcaact 112
Query: 140 tttccttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaata 199
||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| |||
Sbjct: 111 tttccttcaaatagtgcgatctgattaagcccaacatctcttcctttaccaacctggata 52
Query: 200 tattcatgatgagttatgcatccttgacgcagagt 234
|| ||||| ||||||||| ||||||||||||||
Sbjct: 51 tactcatggtgagttatgttcccttgacgcagagt 17
>gb|AV923029.1|AV923029 AV923029 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3g22 5', mRNA sequence
Length = 611
Score = 79.8 bits (40), Expect = 1e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| ||||||||| || |||||||| || || |||||||| || || ||||||
Sbjct: 357 tcaaatagtgaaatctgattgagaccaacatctcttcccttgccaacttgcatgtattca 298
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcctcactg 265
||||| || | | ||||| |||||| ||||| |||||||| ||| |||| ||||||||
Sbjct: 297 tgatgtgtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcacta 238
Query: 266 atattgat 273
| ||||||
Sbjct: 237 agattgat 230
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 371 gcaagaacacgctgtcctaatgtcacaaaacttgtctc 408
||||| ||||||||||| | |||||||||||||||||
Sbjct: 132 gcaagtacacgctgtccaatagtcacaaaacttgtctc 95
>gb|AV934137.1|AV934137 AV934137 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11c09 5', mRNA sequence
Length = 589
Score = 77.8 bits (39), Expect = 4e-013
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| ||||||||| || |||||||| || || |||||||| || || ||||||
Sbjct: 128 tcaaatagtgaaatctgattgagaccaacatctcttcccttgccaacttgcatgtattca 69
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcctcact 264
||||| || | | ||||| |||||| ||||| |||||||| ||| |||| ||||||||
Sbjct: 68 tgatgtgtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcact 10
>gb|BJ470174.1|BJ470174 BJ470174 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15l17 5', mRNA sequence
Length = 537
Score = 77.8 bits (39), Expect = 4e-013
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| ||||||||| || |||||||| || || |||||||| || || ||||||
Sbjct: 139 tcaaatagtgaaatctgattgagaccaacatctcttcccttgccaacttgcatgtattca 80
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcctcact 264
||||| || | | ||||| |||||| ||||| |||||||| ||| |||| ||||||||
Sbjct: 79 tgatgtgtaacgtttccttcacgcagtgttgaattgaatccagcaaatatgtcctcact 21
>gb|AV932586.1|AV932586 AV932586 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1e06 5', mRNA sequence
Length = 582
Score = 58.0 bits (29), Expect = 4e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| ||||||||| || |||||||| || || |||||||| || || ||||||
Sbjct: 115 tcaaatagtgaaatctgattgagaccaacatctcttcccttgccaacttgcatgtattca 56
Query: 206 tgatg 210
|||||
Sbjct: 55 tgatg 51
>gb|BJ462458.1|BJ462458 BJ462458 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28g06 5', mRNA sequence
Length = 666
Score = 48.1 bits (24), Expect = 4e-004
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| |||||||| || ||||| |||||||| || || || |||||||| ||||| ||
Sbjct: 110 atcaaacacatctgggtggccataatgcattctaaccttgagtgggttagctagaactcg 51
Query: 382 ctgtcctaatgtcacaaaacttgt 405
||| || | || |||||||||||
Sbjct: 50 ctgccccagagtgacaaaacttgt 27
Score = 38.2 bits (19), Expect = 0.37
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgatattgat 273
|||||||| ||| | |||||||||||||| |||||
Sbjct: 193 ttgaatccagcaaagatatcctcactgatgttgat 159
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 335 tagcgtggtcgcggccgaggtac 313
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 335 tagcgtggtcgcggccgaggtac 313
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 336 tagcgtggtcgcggccgaggtac 314
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 335 tagcgtggtcgcggccgaggtac 313
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 336 tagcgtggtcgcggccgaggtac 314
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 336 tagcgtggtcgcggccgaggtac 314
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 336 tagcgtggtcgcggccgaggtac 314
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 336 tagcgtggtcgcggccgaggtac 314
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 335 tagcgtggtcgcggccgaggtac 313
>gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-153
similar to Hexaprenyldihydroxybenzoate
methyltransferase,(S)-scoulerine 9-O-methyltransferase,
mRNA sequence
Length = 255
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 202 tagcgtggtcgcggccgaggtac 180
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 79 tagcgtggtcgcggccgaggtac 101
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 370 tagcgtggtcgcggccgaggtac 348
>gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J04 5', mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 336 tagcgtggtcgcggccgaggtac 314
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 370 tagcgtggtcgcggccgaggtac 348
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 335 tagcgtggtcgcggccgaggtac 313
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 370 tagcgtggtcgcggccgaggtac 348
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 336 tagcgtggtcgcggccgaggtac 314
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 79 tagcgtggtcgcggccgaggtac 101
>gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L03 5', mRNA sequence
Length = 413
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 tagcgtggtcgcggtcgaggtac 23
|||||||||||||| ||||||||
Sbjct: 356 tagcgtggtcgcggccgaggtac 334
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,953
Number of Sequences: 312970
Number of extensions: 47953
Number of successful extensions: 10490
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10459
Number of HSP's gapped (non-prelim): 30
length of query: 697
length of database: 175,134,539
effective HSP length: 19
effective length of query: 678
effective length of database: 169,188,109
effective search space: 114709537902
effective search space used: 114709537902
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)