BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA13d08.yg.2.1
(511 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU968786.1|BU968786 HB08J10r BC Hordeum vulgare subsp. v... 139 1e-031
gb|BE411155.1|BE411155 ISC002.F05F990411 ITEC ISC Barley Le... 62 2e-008
gb|BE411205.1|BE411205 ISC003.B07F990519 ITEC ISC Barley Le... 62 2e-008
gb|AL508216.1|AL508216 AL508216 Hordeum vulgare Barke devel... 62 2e-008
gb|BF621474.2|BF621474 HVSMEa0011B17f Hordeum vulgare seedl... 62 2e-008
gb|BI953273.1|BI953273 HVSMEm0011P12f Hordeum vulgare green... 62 2e-008
gb|AV910696.1|AV910696 AV910696 K. Sato unpublished cDNA li... 62 2e-008
gb|AV911848.1|AV911848 AV911848 K. Sato unpublished cDNA li... 62 2e-008
gb|AV923658.1|AV923658 AV923658 K. Sato unpublished cDNA li... 62 2e-008
gb|AV928102.1|AV928102 AV928102 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ449327.1|BJ449327 BJ449327 K. Sato unpublished cDNA li... 62 2e-008
gb|BJ456791.1|BJ456791 BJ456791 K. Sato unpublished cDNA li... 62 2e-008
gb|BQ470571.1|BQ470571 HX03G02r HX Hordeum vulgare subsp. v... 62 2e-008
gb|BM372560.2|BM372560 EBpi05_SQ003_E24_R pistil, 8 DPA, no... 62 2e-008
gb|BU997790.1|BU997790 HI09A08r HI Hordeum vulgare subsp. v... 62 2e-008
gb|BU998047.1|BU998047 HI09N09r HI Hordeum vulgare subsp. v... 62 2e-008
gb|CB859016.1|CB859016 HI09A08w HI Hordeum vulgare subsp. v... 62 2e-008
gb|CB859243.1|CB859243 HI09N09w HI Hordeum vulgare subsp. v... 62 2e-008
gb|BI955066.1|BI955066 HVSMEm0021C12f Hordeum vulgare green... 54 5e-006
gb|AV923568.1|AV923568 AV923568 K. Sato unpublished cDNA li... 48 3e-004
gb|BQ660799.1|BQ660799 HI05I11u HI Hordeum vulgare subsp. v... 44 0.004
>gb|BU968786.1|BU968786 HB08J10r BC Hordeum vulgare subsp. vulgare cDNA clone HB08J10
5-PRIME, mRNA sequence
Length = 581
Score = 139 bits (70), Expect = 1e-031
Identities = 239/294 (81%), Gaps = 1/294 (0%)
Strand = Plus / Plus
Query: 218 ttggtgtatgcataattagcgccatatttgggacagctgatgctaattgtcaaggcgcac 277
|||||||||||||||| || ||| | ||||||||| ||||||| |||| |||| |
Sbjct: 51 ttggtgtatgcataatcagtgccctttttgggacatctgatgcgc-ttgttaaggtggct 109
Query: 278 tggttggcgacctttctttaatgtgcccagagttcattcagtccttcatggcgggactag 337
||||||| ||||||||||| |||||||| ||||||||||||||||| || | || | |
Sbjct: 110 tggttggtgacctttctttgatgtgcccggagttcattcagtcctttctgtcaggcttgg 169
Query: 338 ctgcatcaggggtcctaacatcagctttgagattagttaccaaggcagcttttgagagct 397
|||||||||| || ||||||||||||||||| || |||| |||||||||||||||| ||
Sbjct: 170 ctgcatcaggagttataacatcagctttgagactaattacaaaggcagcttttgagaact 229
Query: 398 caaaagatggtcttcgcattggagctatactgttcttttcaatcacatgcctgttcgagc 457
|| || |||| ||||| | ||||||||| | ||||| || | |||||| | |||||||
Sbjct: 230 cacaaaatggccttcgaaatggagctatgttattcttctcggtaacatgcattttcgagc 289
Query: 458 tggtgtgcctcctgctatacacattcgtcttcggcaaactacccatcgtgaagt 511
| | ||| |||| |||||| |||| ||||| |||| |||||||||||||||
Sbjct: 290 tagcttgcttcctcctatacgcattagtctttcccaaattacccatcgtgaagt 343
>gb|BE411155.1|BE411155 ISC002.F05F990411 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC002.F05, mRNA sequence
Length = 439
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 292 cccgccgtgccggagctgatggcgctctccgccacgtac 254
>gb|BE411205.1|BE411205 ISC003.B07F990519 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC003.B07, mRNA sequence
Length = 425
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 293 cccgccgtgccggagctgatggcgctctccgccacgtac 255
>gb|AL508216.1|AL508216 AL508216 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08B21V 5',
mRNA sequence
Length = 700
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 416 cccgccgtgccggagctgatggcgctctccgccacgtac 378
>gb|BF621474.2|BF621474 HVSMEa0011B17f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011B17f, mRNA sequence
Length = 873
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 489 cccgccgtgccggagctgatggcgctctccgccacgtac 451
>gb|BI953273.1|BI953273 HVSMEm0011P12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0011P12f, mRNA sequence
Length = 476
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 435 cccgccgtgccggagctgatggcgctctccgccacgtac 397
>gb|AV910696.1|AV910696 AV910696 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1m03 5', mRNA sequence
Length = 641
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 139 cccgccgtgccggagctgatggcgctctccgccacgtac 101
>gb|AV911848.1|AV911848 AV911848 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak1m03 3', mRNA sequence
Length = 682
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 534 cccgccgtgccggagctgatggcgctctccgccacgtac 572
>gb|AV923658.1|AV923658 AV923658 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13o18 5', mRNA sequence
Length = 548
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 473 cccgccgtgccggagctgatggcgctctccgccacgtac 435
>gb|AV928102.1|AV928102 AV928102 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13o18 3', mRNA sequence
Length = 650
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 505 cccgccgtgccggagctgatggcgctctccgccacgtac 543
>gb|BJ449327.1|BJ449327 BJ449327 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23h19 5', mRNA sequence
Length = 585
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 373 cccgccgtgccggagctgatggcgctctccgccacgtac 335
>gb|BJ456791.1|BJ456791 BJ456791 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23h19 3', mRNA sequence
Length = 654
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 391 cccgccgtgccggagctgatggcgctctccgccacgtac 429
>gb|BQ470571.1|BQ470571 HX03G02r HX Hordeum vulgare subsp. vulgare cDNA clone HX03G02
5-PRIME, mRNA sequence
Length = 480
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 420 cccgccgtgccggagctgatggcgctctccgccacgtac 382
>gb|BM372560.2|BM372560 EBpi05_SQ003_E24_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_E24 5', mRNA sequence
Length = 426
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 422 cccgccgtgccggagctgatggcgctctccgccacgtac 384
>gb|BU997790.1|BU997790 HI09A08r HI Hordeum vulgare subsp. vulgare cDNA clone HI09A08
5-PRIME, mRNA sequence
Length = 633
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 478 cccgccgtgccggagctgatggcgctctccgccacgtac 440
>gb|BU998047.1|BU998047 HI09N09r HI Hordeum vulgare subsp. vulgare cDNA clone HI09N09
5-PRIME, mRNA sequence
Length = 649
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 478 cccgccgtgccggagctgatggcgctctccgccacgtac 440
>gb|CB859016.1|CB859016 HI09A08w HI Hordeum vulgare subsp. vulgare cDNA clone HI09A08
3-PRIME, mRNA sequence
Length = 666
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 468 cccgccgtgccggagctgatggcgctctccgccacgtac 506
>gb|CB859243.1|CB859243 HI09N09w HI Hordeum vulgare subsp. vulgare cDNA clone HI09N09
3-PRIME, mRNA sequence
Length = 590
Score = 61.9 bits (31), Expect = 2e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||||||||||| ||||| |||||||||
Sbjct: 468 cccgccgtgccggagctgatggcgctctccgccacgtac 506
>gb|BI955066.1|BI955066 HVSMEm0021C12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0021C12f, mRNA sequence
Length = 682
Score = 54.0 bits (27), Expect = 5e-006
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggagctgatggcactctcggccacgtac 40
||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 431 cccgccgtgccggagttgatggcgctctccgccacgtac 393
>gb|AV923568.1|AV923568 AV923568 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j18 5', mRNA sequence
Length = 305
Score = 48.1 bits (24), Expect = 3e-004
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 2 cccgccgtgccggag-ctgatggcactctcggccacgtac 40
||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 296 cccgccgtgccggagactgatggcgctctccgccacgtac 257
>gb|BQ660799.1|BQ660799 HI05I11u HI Hordeum vulgare subsp. vulgare cDNA clone HI05I11
3-PRIME, mRNA sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.004
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 43 acactagtttaccagccttttgcctttgga 72
|||||||| ||||||||||| |||||||||
Sbjct: 463 acactagtataccagcctttcgcctttgga 492
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,655
Number of Sequences: 312970
Number of extensions: 46655
Number of successful extensions: 12629
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12604
Number of HSP's gapped (non-prelim): 24
length of query: 511
length of database: 175,134,539
effective HSP length: 18
effective length of query: 493
effective length of database: 169,501,079
effective search space: 83564031947
effective search space used: 83564031947
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)