BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063O07F020916.3.1
(657 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF623444.2|BF623444 HVSMEa0002B20f Hordeum vulgare seedl... 204 3e-051
gb|CA029310.1|CA029310 HZ64N08r HZ Hordeum vulgare subsp. v... 182 1e-044
gb|BG300534.2|BG300534 HVSMEb0017G09f Hordeum vulgare seedl... 103 7e-021
gb|AV919712.1|AV919712 AV919712 K. Sato unpublished cDNA li... 38 0.35
gb|AV922267.1|AV922267 AV922267 K. Sato unpublished cDNA li... 38 0.35
>gb|BF623444.2|BF623444 HVSMEa0002B20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002B20f, mRNA sequence
Length = 846
Score = 204 bits (103), Expect = 3e-051
Identities = 151/167 (90%)
Strand = Plus / Plus
Query: 419 aatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaagttatggtt 478
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 226 aatcctttgggaggtacaatggctagacctttgacttcccaagggaaagaagttatggtt 285
Query: 479 ggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaactctgtat 538
||||| || ||| | ||||||| ||| |||||||| |||||| |||| ||| ||||||||
Sbjct: 286 ggttctaaaggtttaattaagagggatgaatttgtgaggatactcacaaaatctctgtat 345
Query: 539 agtcttggatatgaaaaaagtggagcagttctggaggaggaatcagg 585
| ||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct: 346 actcttggatatgaaaaaactggagctgttcttgaggaggaatcagg 392
Score = 123 bits (62), Expect = 8e-027
Identities = 95/106 (89%)
Strand = Plus / Plus
Query: 282 gaagtgaaaaatatatgggctgatcttggcatttcatgggaggttctgaagatgacgagc 341
||||| || ||||||||||||||| |||||||||||||||||||| ||||||||| || |
Sbjct: 89 gaagtaaagaatatatgggctgattttggcatttcatgggaggttttgaagatgatgaac 148
Query: 342 caccctcaaaacgcgcaagaacatcctcagtagaatctgcaagttt 387
| || |||||||| |||||| |||||||||||||||| ||||||||
Sbjct: 149 cgccatcaaaacgggcaagagcatcctcagtagaatcagcaagttt 194
>gb|CA029310.1|CA029310 HZ64N08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N08
5-PRIME, mRNA sequence
Length = 367
Score = 182 bits (92), Expect = 1e-044
Identities = 170/196 (86%)
Strand = Plus / Plus
Query: 288 aaaaatatatgggctgatcttggcatttcatgggaggttctgaagatgacgagccaccct 347
||||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||
Sbjct: 165 aaaaatatatgggctgactctggcatttcatgggaggttttgaagatgatgaaccaccct 224
Query: 348 caaaacgcgcaagaacatcctcagtagaatctgcaagtttaccagactgtttctcgtttt 407
|||||||||||||| ||||||||||||| || ||| |||| |||| |||||| | ||
Sbjct: 225 caaaacgcgcaagagcatcctcagtagagtcaacaattttatcagaaagtttctgttatt 284
Query: 408 cgaaattttccaatcctttgggaagtacaatggctagacctttgccttcccaagggaaag 467
|||||| || ||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 285 cgaaatccattaaccctttgggaggtacaatggctagacctttggcttcccaggggaaag 344
Query: 468 aagttatggttggttc 483
||||||||||||||||
Sbjct: 345 aagttatggttggttc 360
>gb|BG300534.2|BG300534 HVSMEb0017G09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017G09f, mRNA sequence
Length = 908
Score = 103 bits (52), Expect = 7e-021
Identities = 85/96 (88%)
Strand = Plus / Plus
Query: 282 gaagtgaaaaatatatgggctgatcttggcatttcatgggaggttctgaagatgacgagc 341
||||| || ||||||||||||||| |||||||||||||||||||| ||||||||| || |
Sbjct: 405 gaagtaaagaatatatgggctgattttggcatttcatgggaggttttgaagatgatgaac 464
Query: 342 caccctcaaaacgcgcaagaacatcctcagtagaat 377
| || |||||||| |||||| ||| |||||||||||
Sbjct: 465 cgccatcaaaacgggcaagagcattctcagtagaat 500
Score = 38.2 bits (19), Expect = 0.35
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 435 caatggctagacctttgccttcccaagggaaagaagttatggt 477
||||||||||||||| | ||| | |||||||| ||| ||||||
Sbjct: 556 caatggctagaccttggactttcaaagggaaaaaagatatggt 598
>gb|AV919712.1|AV919712 AV919712 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7e10 3', mRNA sequence
Length = 460
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgatcttggcatttcat 318
|||||||||||||||||||
Sbjct: 321 gctgatcttggcatttcat 339
>gb|AV922267.1|AV922267 AV922267 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags3f22 3', mRNA sequence
Length = 472
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgatcttggcatttcat 318
|||||||||||||||||||
Sbjct: 355 gctgatcttggcatttcat 373
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,526
Number of Sequences: 312970
Number of extensions: 64526
Number of successful extensions: 18494
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18483
Number of HSP's gapped (non-prelim): 11
length of query: 657
length of database: 175,134,539
effective HSP length: 19
effective length of query: 638
effective length of database: 169,188,109
effective search space: 107942013542
effective search space used: 107942013542
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)