BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.060L08F020610.3.1
(677 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. v... 76 2e-012
gb|CB883684.1|CB883684 HQ02P16w HQ Hordeum vulgare subsp. v... 72 3e-011
gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedl... 64 6e-009
gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA li... 64 6e-009
gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. v... 64 6e-009
gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. v... 64 6e-009
gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. v... 64 6e-009
gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike... 60 1e-007
gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green... 60 1e-007
gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. v... 60 1e-007
gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. v... 60 1e-007
gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, ... 58 4e-007
gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedl... 48 4e-004
gb|AV923522.1|AV923522 AV923522 K. Sato unpublished cDNA li... 48 4e-004
gb|BF616273.3|BF616273 HVSMEc0004P09f Hordeum vulgare seedl... 38 0.36
>gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. vulgare cDNA clone HU14I23
5-PRIME, mRNA sequence
Length = 598
Score = 75.8 bits (38), Expect = 2e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 172 aagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctggt 231
||||||||||||| | ||||||| || || || ||||||||||||||||| |||||||||
Sbjct: 189 aagatccctgatacgctgtttggaatattctttgaggagatcaaccatgcaggagctggt 248
Query: 232 gggttgtgggcagagcttgtaagcaacagaggatttga 269
|| | |||||||| ||||| || || ||||| |||||
Sbjct: 249 ggaatatgggcagaacttgttagtaatagaggttttga 286
>gb|CB883684.1|CB883684 HQ02P16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P16
3-PRIME, mRNA sequence
Length = 601
Score = 71.9 bits (36), Expect = 3e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 172 aagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctggt 231
||||||||||||| | ||||||| || || || ||||||||||||||||| |||||||||
Sbjct: 513 aagatccctgatacgctgtttggaatattctttgaggagatcaaccatgcaggagctggt 572
Query: 232 gggttgtgggcagagcttgt 251
|| | |||||||| |||||
Sbjct: 573 ggaatatgggcagaacttgt 592
>gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009I22f, mRNA sequence
Length = 865
Score = 63.9 bits (32), Expect = 6e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 188 tgtttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagc 247
||||||| || ||||| ||||||||||||||||| ||||| ||||| | |||||||| |
Sbjct: 248 tgtttgggatgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaac 307
Query: 248 ttgtaagcaacagaggatttgaggctgg 275
|||| || || ||||| ||||| |||||
Sbjct: 308 ttgttagtaatagaggttttgaagctgg 335
>gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2e14 5', mRNA sequence
Length = 644
Score = 63.9 bits (32), Expect = 6e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 188 tgtttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagc 247
||||||| || ||||| ||||||||||||||||| ||||| ||||| | |||||||| |
Sbjct: 263 tgtttgggatgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaac 322
Query: 248 ttgtaagcaacagaggatttgaggctgg 275
|||| || || ||||| ||||| |||||
Sbjct: 323 ttgttagtaatagaggttttgaagctgg 350
>gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49N06
5-PRIME, mRNA sequence
Length = 598
Score = 63.9 bits (32), Expect = 6e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 188 tgtttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagc 247
||||||| || ||||| ||||||||||||||||| ||||| ||||| | |||||||| |
Sbjct: 253 tgtttgggatgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaac 312
Query: 248 ttgtaagcaacagaggatttgaggctgg 275
|||| || || ||||| ||||| |||||
Sbjct: 313 ttgttagtaatagaggttttgaagctgg 340
>gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63L22
5-PRIME, mRNA sequence
Length = 390
Score = 63.9 bits (32), Expect = 6e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 188 tgtttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagc 247
||||||| || ||||| ||||||||||||||||| ||||| ||||| | |||||||| |
Sbjct: 253 tgtttgggatgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaac 312
Query: 248 ttgtaagcaacagaggatttgaggctgg 275
|||| || || ||||| ||||| |||||
Sbjct: 313 ttgttagtaatagaggttttgaagctgg 340
>gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65L02
5-PRIME, mRNA sequence
Length = 598
Score = 63.9 bits (32), Expect = 6e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 188 tgtttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagc 247
||||||| || ||||| ||||||||||||||||| ||||| ||||| | |||||||| |
Sbjct: 253 tgtttgggatgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaac 312
Query: 248 ttgtaagcaacagaggatttgaggctgg 275
|||| || || ||||| ||||| |||||
Sbjct: 313 ttgttagtaatagaggttttgaagctgg 340
>gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G12f, mRNA sequence
Length = 489
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 264 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 323
Query: 265 tttgaggctggtgggcct 282
||||| || || ||||||
Sbjct: 324 tttgaagccggagggcct 341
>gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007G12f, mRNA sequence
Length = 417
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 264 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 323
Query: 265 tttgaggctggtgggcct 282
||||| || || ||||||
Sbjct: 324 tttgaagccggagggcct 341
>gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. vulgare cDNA clone HA16J20
5-PRIME, mRNA sequence
Length = 372
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 98 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 157
Query: 265 tttgaggctggtgggcct 282
||||| || || ||||||
Sbjct: 158 tttgaagccggagggcct 175
>gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36J20
5-PRIME, mRNA sequence
Length = 416
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 265 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 324
Query: 265 tttgaggctggtgggcct 282
||||| || || ||||||
Sbjct: 325 tttgaagccggagggcct 342
>gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48H21
5-PRIME, mRNA sequence
Length = 428
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 284 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 343
Query: 265 tttgaggctggtgggcct 282
||||| || || ||||||
Sbjct: 344 tttgaagccggagggcct 361
>gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48I02
5-PRIME, mRNA sequence
Length = 463
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 274 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 333
Query: 265 tttgaggctggtgggcct 282
||||| || || ||||||
Sbjct: 334 tttgaagccggagggcct 351
>gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50J14
5-PRIME, mRNA sequence
Length = 417
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 261 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 320
Query: 265 tttgaggctggtgggcct 282
||||| || || ||||||
Sbjct: 321 tttgaagccggagggcct 338
>gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55O15
5-PRIME, mRNA sequence
Length = 438
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 281 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 340
Query: 265 tttgaggctggtgggcct 282
||||| || || ||||||
Sbjct: 341 tttgaagccggagggcct 358
>gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_J08 5', mRNA sequence
Length = 659
Score = 58.0 bits (29), Expect = 4e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 205 gaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagga 264
||||| |||||||| |||||||||||||| || ||||| |||||||| || |||| |||
Sbjct: 258 gaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagtaacaaaggt 317
Query: 265 tttga 269
|||||
Sbjct: 318 tttga 322
>gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005C01f, mRNA sequence
Length = 789
Score = 48.1 bits (24), Expect = 4e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 188 tgtttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagc 247
||||||| || ||||| ||||||||||||||||| |||| ||||| | |||||||| |
Sbjct: 262 tgtttgggatgttttttgaggagatcaaccatgcatgagccggtggcatatgggcagaac 321
Query: 248 ttgt 251
||||
Sbjct: 322 ttgt 325
>gb|AV923522.1|AV923522 AV923522 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13h16 5', mRNA sequence
Length = 270
Score = 48.1 bits (24), Expect = 4e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 188 tgtttggcatctttttcgaggagatcaaccatgctggagc 227
||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 229 tgtttgggatgttttttgaggagatcaaccatgcaggagc 268
>gb|BF616273.3|BF616273 HVSMEc0004P09f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0004P09f, mRNA sequence
Length = 571
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 110 gtgcggaggggcagaaccc 128
|||||||||||||||||||
Sbjct: 85 gtgcggaggggcagaaccc 103
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,420
Number of Sequences: 312970
Number of extensions: 57420
Number of successful extensions: 17456
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17412
Number of HSP's gapped (non-prelim): 44
length of query: 677
length of database: 175,134,539
effective HSP length: 19
effective length of query: 658
effective length of database: 169,188,109
effective search space: 111325775722
effective search space used: 111325775722
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)